genome.fa.s7.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  111  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31289191--31289281	45	2.0	45	93	0	155	36	24	14	25	1.93
31289210--31289285	21	3.5	21	66	16	55	36	25	14	23	1.93
31291784--31291960	40	4.4	40	84	4	225	23	22	27	26	1.99
31294805--31294874	34	2.1	33	84	7	88	22	30	22	24	1.99
31294805--31294879	33	2.2	34	83	6	91	24	28	22	25	2.00
31295872--31295915	22	2.0	22	86	8	63	4	15	20	59	1.54
31297124--31297178	20	2.8	19	97	0	83	36	10	20	32	1.87
31297124--31297178	11	5.4	11	70	16	55	36	10	20	32	1.87
31297228--31297332	26	4.1	26	86	2	151	27	20	22	29	1.98
31300462--31300501	20	2.0	20	100	0	80	25	5	45	25	1.73
31305219--31305274	20	2.9	20	84	10	64	39	10	16	33	1.83
31305324--31305459	52	2.7	51	89	5	206	27	21	24	26	1.99
31305324--31305459	26	5.3	26	84	3	172	27	21	24	26	1.99
31314145--31314186	20	2.1	20	100	0	84	35	19	4	40	1.72
31318794--31318857	31	2.1	31	93	0	110	23	23	15	37	1.93
31319051--31319171	24	5.0	24	90	7	183	28	22	20	28	1.99
31319051--31319171	49	2.5	47	90	6	181	28	22	20	28	1.99
31319220--31319286	20	3.3	20	85	0	89	34	20	11	32	1.90
31324278--31324350	36	2.0	36	94	0	128	32	10	21	34	1.89
31325776--31325814	20	1.9	21	89	5	62	20	10	0	69	1.17
31326773--31326829	23	2.5	23	80	8	64	84	5	1	8	0.84
31326768--31326838	33	2.2	33	85	10	92	81	5	1	11	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31326768--31326837	8	8.0	9	72	15	58	82	5	1	10	0.88
31331961--31331995	9	4.0	9	85	7	54	57	25	8	8	1.57
31332445--31332524	22	3.6	22	84	0	106	15	23	17	43	1.86
31341479--31341603	29	4.3	29	78	5	128	32	28	13	25	1.94
31343003--31343039	14	2.8	13	88	11	58	21	5	10	62	1.48
31346173--31346210	19	2.0	19	85	10	51	18	10	0	71	1.14
31352325--31352355	8	4.0	8	95	4	55	87	0	0	12	0.55
31358075--31358198	29	4.3	29	84	2	162	29	29	13	26	1.94
31360464--31360496	18	1.9	17	88	11	50	30	15	12	42	1.83
31361837--31361952	27	4.3	27	82	4	99	29	12	17	40	1.87
31361889--31362041	81	1.9	81	87	5	229	32	10	18	39	1.84
31361850--31362035	54	3.4	54	86	2	241	31	10	18	39	1.84
31361850--31362042	27	7.2	26	78	10	183	30	10	19	38	1.86
31375125--31375179	21	2.8	19	81	10	65	70	5	1	21	1.16
31375554--31375596	21	2.0	21	95	0	77	37	11	23	27	1.89
31377746--31377888	39	3.6	39	88	0	187	23	22	31	23	1.98
31380997--31381027	14	2.3	14	94	5	55	64	0	6	29	1.18
31382652--31382707	25	2.2	25	79	14	62	25	5	19	50	1.69
31385675--31385806	29	4.6	29	84	1	140	25	17	32	25	1.97
31393361--31393492	29	4.6	29	84	1	140	25	17	32	25	1.97
31399492--31399686	38	5.1	40	86	5	215	25	31	21	22	1.98
31399527--31399686	38	4.2	39	88	5	245	25	31	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31399497--31399686	76	2.5	78	85	6	253	24	31	21	23	1.99
31402108--31402169	29	2.1	29	93	0	106	27	25	17	29	1.98
31409969--31410098	57	2.3	58	85	4	165	26	32	16	25	1.96
31409940--31410098	29	5.5	29	82	5	171	25	31	16	25	1.97
31416970--31417098	50	2.6	50	84	8	165	24	31	18	25	1.98
31416914--31417327	48	8.8	47	75	9	278	24	29	18	27	1.98
31416967--31417330	94	3.9	94	75	14	322	23	29	18	27	1.98
31443168--31443259	40	2.3	40	84	3	114	30	27	13	29	1.94
31445733--31445802	27	2.5	27	81	4	77	34	35	17	12	1.88
31445746--31445802	27	2.1	28	86	3	80	35	35	15	14	1.88
31445749--31445821	28	2.7	29	79	10	82	41	31	13	13	1.84
31447826--31447926	28	3.5	29	86	6	125	29	27	13	28	1.95
31455582--31455682	28	3.5	29	86	6	125	29	27	13	28	1.95
31457259--31457294	18	2.0	18	94	0	63	30	11	13	44	1.79
31459325--31459358	14	2.5	13	86	9	50	8	5	0	85	0.75
31465745--31466228	123	3.9	123	99	0	950	28	26	8	36	1.85
31472594--31472714	65	1.9	65	87	5	183	54	17	5	22	1.64
31477644--31477765	44	2.8	43	77	12	151	30	24	17	27	1.97
31478874--31478898	13	1.9	13	100	0	50	40	24	4	32	1.73
31479154--31479217	32	2.0	32	100	0	128	28	21	0	50	1.49
31487735--31487794	29	2.1	29	87	0	84	46	13	5	35	1.65
31488373--31488404	17	1.9	16	93	6	55	75	3	3	18	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31494026--31494216	39	4.9	39	91	0	301	24	22	30	21	1.99
31495645--31495717	29	2.5	29	95	0	128	36	16	23	23	1.94
31506057--31506258	6	33.8	6	94	1	361	34	15	0	50	1.44
31508259--31508316	28	2.1	27	81	9	64	18	24	10	46	1.80
31516857--31516957	28	3.5	29	86	6	125	29	27	13	28	1.95
31524541--31524641	28	3.5	29	86	6	125	29	27	13	28	1.95
31530457--31530489	16	2.1	16	100	0	66	24	18	18	39	1.92
31533674--31533836	39	4.2	39	93	0	272	22	20	32	24	1.98
31533674--31533866	39	4.9	39	90	1	262	22	21	31	23	1.98
31539881--31540012	29	4.6	29	82	1	140	25	32	17	25	1.97
31547594--31547725	29	4.6	29	82	1	140	25	32	17	25	1.97
31554616--31554654	16	2.2	19	86	13	57	28	15	0	56	1.40
31556691--31556854	71	2.3	71	100	0	328	18	28	17	35	1.94
31556691--31556888	71	2.8	70	91	3	258	20	28	17	33	1.95
31564263--31564426	71	2.3	71	100	0	328	18	28	17	35	1.94
31564263--31564460	71	2.8	70	91	3	258	20	28	17	33	1.95
31572655--31572877	93	2.4	95	81	12	248	22	27	20	29	1.98
31589173--31589210	14	2.9	13	81	11	51	57	10	13	18	1.63
31590868--31590892	12	2.1	12	100	0	50	60	16	8	16	1.58
31594797--31594933	40	3.4	41	79	4	152	26	14	24	34	1.94
31596165--31596207	20	2.2	19	84	12	52	30	6	18	44	1.76
31596675--31596985	167	1.9	167	93	0	532	33	16	19	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31606158--31606218	30	2.0	30	83	0	77	31	22	8	37	1.84
31610542--31610602	30	2.0	30	83	0	77	31	22	8	37	1.84
31621729--31621877	80	1.9	80	81	2	183	22	30	24	22	1.99
31621770--31621877	40	2.7	38	85	8	128	21	29	25	23	1.99
31627383--31627513	30	4.5	30	86	8	171	32	13	25	28	1.94
31627383--31627513	58	2.2	58	86	4	174	32	13	25	28	1.94
31635336--31635466	30	4.5	30	86	8	171	32	13	25	28	1.94
31635336--31635466	58	2.2	58	86	4	174	32	13	25	28	1.94
31640920--31641067	80	1.9	80	81	2	181	22	30	24	22	1.99
31640961--31641067	40	2.7	39	85	8	128	21	29	25	23	1.99
31643976--31644015	17	2.4	17	87	8	55	17	25	30	27	1.97
31644915--31644957	20	2.2	20	87	4	61	34	18	4	41	1.71
31646499--31646560	30	2.1	30	87	0	88	25	22	14	37	1.92
31646773--31646849	23	3.0	27	83	16	119	27	19	19	33	1.96
31646907--31646963	9	5.9	9	73	15	51	36	22	7	33	1.81
31646907--31646965	20	3.0	20	87	0	91	35	22	8	33	1.84
31647002--31647049	25	1.9	25	86	0	69	25	16	25	33	1.96
31653775--31654018	40	6.1	40	87	2	303	27	26	21	24	1.99
31654105--31654293	64	3.0	64	58	16	142	33	26	11	28	1.91
31653987--31654325	123	2.8	123	95	0	597	33	25	10	30	1.90
31660851--31661094	40	6.1	40	86	2	294	27	26	21	25	1.99
31661063--31661401	123	2.8	123	95	0	597	33	25	11	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31664863--31664923	29	2.1	30	84	3	79	26	22	13	37	1.91
31665116--31665234	24	4.9	24	88	11	172	27	21	21	29	1.98
31665137--31665234	47	2.1	47	94	5	171	28	20	20	30	1.98
31665292--31665348	9	5.9	9	73	15	51	35	21	8	35	1.84
31665288--31665350	20	3.2	20	95	0	117	31	19	12	36	1.89
31665387--31665434	25	1.9	25	86	0	69	25	16	25	33	1.96
31672900--31672961	29	2.1	30	84	6	81	25	20	16	37	1.93
31673154--31673272	24	5.0	24	88	10	172	27	21	21	30	1.98
31673174--31673271	47	2.1	47	94	5	171	28	20	20	30	1.98
31673330--31673386	9	5.9	9	73	15	51	35	21	8	35	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328