genome.fa.s7.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  166  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48790942--48790984	16	2.5	18	85	11	63	16	9	34	39	1.80
48794729--48794813	29	3.0	29	79	5	84	28	28	15	28	1.96
48799615--48799683	28	2.5	28	88	4	95	34	24	11	28	1.91
48799968--48800011	15	2.9	16	76	10	56	52	15	0	31	1.44
48808230--48808413	40	4.7	40	80	9	191	24	21	27	26	1.99
48810932--48811082	77	1.9	79	91	2	252	24	20	31	23	1.98
48810931--48811082	39	3.9	39	90	2	234	24	20	31	23	1.98
48810932--48811112	39	4.6	39	87	2	229	24	21	30	23	1.99
48819015--48819167	39	3.9	39	92	0	252	23	20	32	23	1.98
48819016--48819197	39	4.6	39	89	0	247	23	21	31	23	1.98
48819977--48821154	590	2.0	588	81	4	1374	31	16	21	30	1.95
48824573--48824626	25	2.2	24	96	3	99	25	20	18	35	1.95
48828493--48828565	35	2.1	35	100	0	146	36	19	8	35	1.81
48831180--48831278	40	2.5	39	77	9	112	38	35	11	15	1.83
48833902--48833995	39	2.4	39	74	8	93	23	18	25	32	1.97
48834075--48834157	42	2.0	42	97	0	157	37	9	20	32	1.85
48839848--48840041	40	4.9	40	92	0	309	23	28	21	26	1.99
48846476--48846573	38	2.5	39	80	12	112	23	21	27	27	1.99
48846480--48846624	39	3.7	39	80	8	118	23	20	24	31	1.98
48849740--48849807	26	2.7	26	81	4	77	14	25	19	41	1.89
48849740--48849806	25	2.7	25	84	6	75	14	23	19	41	1.89
48853065--48853159	23	4.2	23	69	10	70	56	6	0	36	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48853134--48853211	15	5.1	17	71	24	57	60	7	0	32	1.25
48853213--48853254	11	3.7	11	87	3	57	57	0	4	38	1.20
48853208--48853255	11	4.5	11	79	12	55	56	0	8	35	1.30
48859529--48859574	17	2.7	17	89	0	74	30	10	8	50	1.68
48862343--48862518	46	3.8	46	78	14	200	21	20	28	29	1.98
48862340--48862511	93	1.8	93	93	2	301	21	20	29	28	1.98
48869962--48870031	27	2.5	28	88	2	106	28	14	25	31	1.95
48869962--48870043	27	3.0	27	80	8	103	29	13	23	34	1.93
48878021--48878090	27	2.5	28	88	2	106	28	14	25	31	1.95
48878021--48878102	27	3.0	27	80	8	103	29	13	23	34	1.93
48881246--48881420	45	3.8	46	79	13	216	20	20	29	29	1.98
48896879--48897046	46	3.6	46	77	4	167	20	20	29	29	1.98
48896875--48897047	93	1.9	93	88	0	265	20	20	30	28	1.98
48908222--48908465	108	2.3	108	91	0	398	28	18	24	28	1.98
48915107--48915300	43	4.6	43	83	5	218	27	16	24	30	1.96
48917225--48917294	31	2.3	31	87	0	95	34	4	15	45	1.66
48923748--48923871	23	5.3	23	73	16	96	37	18	21	22	1.95
48925900--48926029	37	3.5	37	83	0	161	35	12	16	36	1.86
48929933--48929964	7	4.6	7	96	0	55	15	9	18	56	1.66
48936617--48936749	54	2.5	54	97	0	248	30	24	20	25	1.99
48947765--48947816	25	2.1	25	96	0	95	36	3	30	28	1.75
48949731--48949817	44	2.0	43	91	6	140	21	12	24	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48949738--48949827	45	2.0	44	89	2	135	23	13	24	38	1.90
48956363--48956494	29	4.6	29	89	0	192	26	14	32	26	1.95
48958613--48958713	28	3.5	28	86	6	114	29	26	13	29	1.94
48958730--48958802	29	2.5	29	93	0	101	26	31	16	26	1.96
48966554--48966654	28	3.5	28	86	6	114	29	26	13	29	1.94
48966671--48966743	29	2.5	29	93	0	101	26	31	16	26	1.96
48967486--48967556	36	2.0	36	100	0	142	38	22	8	30	1.84
48974681--48974841	29	5.6	29	91	0	250	26	14	32	26	1.95
48978943--48979011	28	2.5	28	80	7	86	42	21	15	20	1.89
48989437--48989470	12	2.8	13	86	13	54	32	26	14	26	1.95
48990410--48990524	61	1.9	60	82	8	144	25	36	21	16	1.94
48991747--48991805	23	2.6	23	91	0	100	23	37	25	13	1.92
48991882--48991984	43	2.4	43	91	0	170	17	43	20	18	1.88
48992849--48992986	55	2.5	53	83	8	152	30	33	16	19	1.94
48996318--48996363	19	2.4	19	92	0	74	45	2	0	52	1.13
48996330--48996365	11	3.5	11	78	21	51	44	0	0	55	0.99
48998224--48998258	2	17.5	2	100	0	70	51	0	0	48	1.00
49004490--49004572	35	2.4	35	93	0	139	31	21	22	24	1.98
49007059--49007089	2	15.5	2	100	0	62	51	0	0	48	1.00
49007599--49007743	19	7.1	20	70	15	66	60	0	5	33	1.25
49007677--49007742	17	3.6	18	74	13	62	63	0	3	33	1.10
49007684--49007732	23	2.1	23	88	7	73	57	0	4	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49007670--49007742	36	2.1	35	84	7	94	60	0	4	35	1.16
49007677--49007744	21	3.5	20	73	16	63	63	0	2	33	1.10
49007837--49007878	19	2.2	20	88	12	63	69	0	7	23	1.13
49009551--49010237	119	5.8	119	92	0	964	31	19	16	33	1.93
49012874--49013077	40	5.1	40	89	4	290	21	23	29	25	1.99
49018980--49019012	14	2.4	14	100	0	66	42	9	6	42	1.61
49020830--49021047	40	5.5	40	88	4	293	22	23	28	25	1.99
49029477--49029526	15	3.5	15	82	15	61	42	10	24	24	1.85
49033490--49033542	18	2.7	19	83	13	63	52	1	1	43	1.23
49033493--49033540	20	2.3	20	85	7	60	54	2	2	41	1.24
49033554--49033613	11	5.4	11	76	7	50	55	0	6	38	1.27
49033562--49033617	20	2.8	20	83	8	69	58	0	5	35	1.21
49033719--49033752	18	1.9	17	94	5	59	70	0	2	26	1.01
49035758--49035922	39	4.2	40	81	3	174	24	26	22	26	2.00
49036735--49036780	17	2.5	19	74	22	53	34	23	17	23	1.96
49043754--49043920	40	4.2	40	81	2	176	23	26	22	26	2.00
49044740--49044785	17	2.5	19	74	22	53	34	23	17	23	1.96
49048257--49048355	28	3.5	29	93	5	159	27	12	28	32	1.92
49060228--49060565	48	7.0	48	96	0	604	34	6	28	29	1.83
49060706--49060850	37	3.9	37	95	0	245	24	17	31	26	1.97
49064789--49064821	2	16.5	2	100	0	66	51	0	0	48	1.00
49069225--49069279	24	2.3	24	85	11	78	52	1	0	45	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49071186--49071224	18	2.2	18	100	0	78	20	41	23	15	1.90
49072942--49073120	40	4.5	39	77	9	164	25	26	22	25	2.00
49072942--49073120	80	2.2	81	84	3	227	25	26	22	25	2.00
49072973--49073122	40	3.7	39	83	4	174	26	26	22	25	2.00
49078036--49078286	49	5.1	49	98	0	475	35	8	25	30	1.86
49078360--49078441	37	2.2	37	86	4	121	21	18	32	26	1.97
49081657--49081716	28	2.1	28	93	0	102	36	25	8	30	1.85
49082878--49082950	15	4.9	15	81	0	83	56	16	15	12	1.68
49088566--49088651	43	2.0	43	90	0	136	25	30	20	23	1.99
49092543--49092645	28	3.7	28	72	5	82	29	17	22	31	1.97
49095025--49095070	23	2.0	23	83	8	58	15	15	30	39	1.88
49106950--49106999	19	2.7	19	84	6	68	26	4	2	68	1.18
49107084--49107142	23	2.7	21	82	10	64	35	5	0	59	1.20
49107090--49107226	19	6.8	19	69	16	57	36	6	0	56	1.31
49119263--49119311	17	2.8	18	74	22	50	24	18	22	34	1.96
49120128--49120294	40	4.2	40	79	6	169	26	22	26	24	2.00
49127263--49127311	17	2.8	18	74	22	50	24	18	22	34	1.96
49128131--49128281	40	3.8	40	80	6	164	26	22	27	23	2.00
49130330--49130481	39	3.9	39	93	0	250	23	22	31	22	1.98
49133436--49133978	44	12.3	44	90	1	804	32	14	25	26	1.95
49134800--49134828	2	14.5	2	100	0	58	48	0	0	51	1.00
49136973--49137045	29	2.5	29	93	0	101	26	31	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49145033--49145105	29	2.5	29	93	0	101	26	31	16	26	1.96
49146879--49146921	18	2.4	17	84	7	59	30	2	0	67	1.03
49146830--49146920	9	10.1	9	70	12	53	35	2	2	60	1.21
49146830--49146920	41	2.3	39	78	17	98	35	2	2	60	1.21
49148917--49148958	22	1.9	22	85	9	59	42	19	16	21	1.89
49149679--49149704	5	5.2	5	100	0	52	19	38	42	0	1.51
49160523--49160708	40	4.7	40	85	5	218	25	26	22	25	2.00
49162579--49162614	13	2.8	13	95	0	63	44	13	0	41	1.44
49167545--49167807	142	1.8	145	79	9	306	25	25	20	28	1.99
49172213--49172265	26	2.0	26	96	0	97	37	28	7	26	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328