genome.fa.s7.2.7.7.80.10.50.1000.244.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  244  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72612809--72612927	24	5.0	24	88	5	170	28	21	22	26	1.99
72612809--72612927	47	2.5	48	89	5	170	28	21	22	26	1.99
72620472--72620700	24	9.6	24	94	1	354	21	18	24	35	1.95
72627090--72627235	40	3.7	40	84	0	175	24	27	21	26	2.00
72627122--72627273	40	3.8	40	84	5	164	23	25	22	28	1.99
72635195--72635340	40	3.7	40	84	0	175	24	27	21	26	2.00
72635227--72635378	40	3.8	40	84	5	164	23	25	22	28	1.99
72642209--72642564	49	7.3	49	91	1	549	32	7	29	30	1.85
72644501--72644672	47	3.7	47	84	3	238	34	9	28	27	1.88
72644523--72644644	22	5.3	22	65	21	61	32	9	29	27	1.89
72644634--72644710	38	2.0	38	97	0	145	35	10	25	28	1.89
72652671--72652708	20	1.9	20	89	10	60	31	13	34	21	1.91
72659622--72659646	12	2.1	12	100	0	50	24	44	8	24	1.80
72660354--72660396	19	2.3	19	84	11	54	51	23	0	25	1.49
72662951--72663052	40	2.5	40	80	0	105	24	25	27	22	2.00
72672694--72672896	27	7.6	26	81	6	201	40	21	8	29	1.83
72672694--72672913	54	4.1	53	83	2	242	40	20	8	30	1.83
72672899--72673111	27	7.9	27	81	4	214	31	18	6	42	1.76
72672891--72673111	54	4.1	54	79	4	239	31	19	6	42	1.76
72672891--72673111	81	2.7	81	87	2	327	31	19	6	42	1.76
72673364--72673393	2	15.0	2	100	0	60	50	0	0	50	1.00
72673568--72673643	31	2.5	31	84	4	91	21	18	13	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72678117--72678166	25	2.0	25	92	0	82	32	24	18	26	1.97
72678206--72678245	10	3.9	10	87	6	62	30	20	20	30	1.97
72680616--72680657	18	2.3	19	88	12	70	23	40	21	14	1.90
72687496--72687706	24	8.8	24	97	0	386	20	18	25	35	1.96
72687496--72687774	48	6.1	48	88	9	411	20	17	25	36	1.95
72687496--72687774	72	4.0	72	87	10	429	20	17	25	36	1.95
72687694--72687718	12	2.1	12	100	0	50	20	16	32	32	1.94
72687670--72687742	36	2.0	36	97	0	137	20	17	27	34	1.95
72687646--72687766	60	2.0	60	93	0	206	20	18	26	34	1.95
72687706--72687776	24	3.0	24	95	0	124	21	15	25	38	1.92
72695542--72695808	24	11.1	24	96	0	462	20	18	25	35	1.95
72699093--72699117	13	1.9	13	100	0	50	24	28	48	0	1.52
72704596--72704695	27	3.7	28	77	9	100	40	21	9	30	1.84
72704598--72704712	54	2.2	53	81	7	135	39	21	9	29	1.85
72704691--72704927	27	8.9	27	87	3	252	27	21	8	42	1.81
72704905--72705071	27	6.1	27	71	13	74	40	20	8	30	1.83
72706355--72706402	25	1.9	25	86	0	69	33	25	16	25	1.96
72706445--72706503	20	3.0	20	92	0	100	35	11	20	32	1.89
72706554--72706719	24	7.0	24	91	4	248	28	22	22	26	1.99
72706554--72706719	47	3.5	46	90	7	244	28	22	22	26	1.99
72706554--72706720	71	2.3	71	90	3	255	28	22	22	26	1.99
72706906--72706987	31	2.6	31	98	0	155	41	13	20	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72709694--72709771	25	3.0	27	80	14	83	38	19	8	33	1.83
72709705--72709801	26	3.7	26	80	5	99	38	22	9	29	1.85
72709795--72710027	26	8.9	27	84	7	275	27	22	7	42	1.81
72710005--72710169	27	6.1	27	72	16	101	41	18	7	31	1.79
72709802--72710027	53	4.3	54	84	6	284	28	21	7	42	1.81
72710013--72710114	26	3.9	26	76	10	82	44	19	6	29	1.77
72710126--72710177	27	1.9	27	88	7	79	40	11	11	36	1.78
72710228--72710296	27	2.7	26	80	10	79	37	17	24	20	1.93
72711438--72711483	24	1.9	24	86	0	65	30	26	17	26	1.97
72711527--72711585	20	3.0	20	92	0	100	35	11	20	32	1.89
72711636--72711778	24	6.0	24	91	4	209	28	22	22	26	1.99
72711636--72711778	47	3.0	47	90	5	207	28	22	22	26	1.99
72711636--72711779	71	2.0	72	89	4	220	29	22	22	26	1.99
72711966--72712042	29	2.6	30	91	6	129	40	12	20	25	1.89
72714081--72714246	40	4.2	41	81	6	173	25	26	21	26	2.00
72714097--72714208	39	2.8	38	87	4	143	25	28	22	24	1.99
72714097--72714246	79	1.9	78	83	6	196	24	27	22	26	1.99
72715065--72715110	17	2.5	19	74	22	53	34	23	17	23	1.96
72715434--72715537	56	1.9	53	81	13	122	30	14	18	36	1.90
72723144--72723317	38	4.5	38	75	13	144	29	20	25	24	1.99
72731221--72731404	40	4.6	40	82	4	174	28	22	26	23	1.99
72734400--72734629	40	5.8	39	83	6	257	26	21	27	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72734400--72734629	80	2.9	80	85	6	290	26	21	27	24	1.99
72734400--72734662	40	6.6	40	78	11	220	27	22	26	23	2.00
72734435--72734697	119	2.2	118	77	7	271	28	22	25	23	1.99
72739215--72739276	32	1.9	32	96	0	115	38	22	9	29	1.86
72742484--72742577	18	5.4	18	92	3	131	28	9	25	36	1.87
72752700--72752956	40	6.5	39	80	7	252	26	22	26	24	2.00
72754964--72755053	29	3.2	28	73	10	85	30	28	17	23	1.97
72754954--72755082	57	2.3	57	81	6	147	28	29	18	23	1.98
72754982--72755081	28	3.6	27	75	10	76	30	28	20	22	1.98
72755091--72755367	40	6.9	40	93	1	468	25	28	22	23	1.99
72756881--72757118	47	5.1	47	87	2	352	27	29	9	33	1.89
72757044--72757118	23	3.1	25	62	30	63	28	29	10	32	1.90
72756861--72757118	141	1.8	141	97	0	489	27	29	9	34	1.88
72759707--72759759	27	2.0	26	85	3	70	35	20	26	16	1.94
72769611--72769735	37	3.4	37	78	0	142	32	28	15	24	1.95
72769667--72769745	37	2.1	37	85	0	104	35	31	16	16	1.91
72772427--72772610	40	4.6	40	81	10	216	25	28	22	23	2.00
72772429--72772611	79	2.3	80	84	7	230	25	27	22	24	2.00
72780255--72780294	21	2.0	20	85	9	55	40	42	5	12	1.64
72780916--72780958	17	2.4	17	80	7	50	23	44	23	9	1.82
72783991--72784119	46	2.8	46	93	0	222	20	21	27	29	1.98
72786933--72786986	27	2.0	27	96	0	99	22	9	14	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72789425--72789553	46	2.8	46	94	2	215	20	20	27	31	1.98
72795455--72795584	71	1.9	70	84	7	176	22	30	16	31	1.95
72799491--72799662	93	1.8	93	92	0	290	27	29	20	21	1.98
72799483--72799658	46	3.8	46	78	12	198	28	28	20	21	1.98
72799534--72799677	46	3.1	46	69	21	120	29	27	19	22	1.98
72801033--72801066	14	2.5	13	86	13	50	44	20	2	32	1.67
72806393--72806723	48	6.9	47	77	4	302	25	27	18	28	1.98
72806393--72806723	96	3.4	96	89	0	482	25	27	18	28	1.98
72806393--72806722	144	2.3	144	79	3	342	25	27	18	28	1.98
72815232--72815272	12	3.3	12	96	3	73	19	24	31	24	1.98
72815826--72815893	26	2.6	27	79	9	77	22	23	19	35	1.96
72828347--72828371	13	1.9	13	100	0	50	28	40	32	0	1.57
72829409--72829740	48	6.9	48	79	2	371	27	28	16	26	1.97
72829422--72829740	96	3.3	95	88	2	444	27	28	16	26	1.97
72834435--72834535	28	3.5	28	86	6	114	28	13	27	29	1.95
72834464--72834535	29	2.5	28	91	6	110	29	13	27	29	1.95
72849295--72849356	30	2.1	30	93	0	106	37	20	14	27	1.92
72852943--72852976	2	17.0	2	100	0	68	50	0	0	50	1.00
72853038--72853085	2	24.0	2	100	0	96	50	0	0	50	1.00
72857654--72857755	31	3.1	31	84	9	105	24	21	14	39	1.91
72857631--72857738	38	2.8	38	92	1	180	23	23	14	38	1.92
72857947--72858065	24	5.0	24	85	9	154	26	24	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72857947--72858065	47	2.5	48	89	8	172	26	24	21	27	1.99
72858116--72858175	20	3.0	20	90	0	102	31	20	11	36	1.88
72858218--72858265	25	1.9	25	86	0	69	25	16	25	33	1.96
72863181--72863287	38	2.8	37	91	4	178	23	22	14	39	1.91
72863204--72863304	38	3.1	32	79	19	118	23	21	15	38	1.92
72863496--72863614	24	5.0	24	85	9	154	26	24	21	27	1.99
72863496--72863614	47	2.5	48	89	8	172	26	24	21	27	1.99
72863665--72863724	20	3.0	20	90	0	102	31	20	11	36	1.88
72863767--72863814	25	1.9	25	86	0	69	25	16	25	33	1.96
72886382--72886429	19	2.6	19	83	3	62	37	2	12	47	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328