genome.fa.s7.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  181  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53849485--53849554	27	2.7	26	84	8	81	30	12	27	30	1.93
53853130--53853173	22	2.0	22	82	8	54	63	9	2	25	1.35
53857664--53857826	39	4.2	39	85	0	227	23	19	32	24	1.98
53857681--53857862	39	4.6	40	83	0	127	22	21	32	23	1.98
53859623--53859848	42	5.4	42	82	2	247	28	18	24	28	1.98
53859620--53859847	84	2.7	83	81	2	276	28	19	24	28	1.98
53862192--53862272	43	1.9	41	85	5	108	29	25	14	29	1.95
53871059--53871125	29	2.3	28	87	5	89	61	2	4	31	1.31
53871875--53871917	19	2.3	19	100	0	86	69	9	0	20	1.15
53874427--53874452	4	6.5	4	100	0	52	23	0	0	76	0.78
53877136--53877178	22	2.0	22	90	9	70	20	13	27	37	1.91
53877577--53877614	2	19.0	2	100	0	76	50	0	0	50	1.00
53879345--53879391	22	2.1	22	100	0	94	34	12	14	38	1.85
53881364--53881446	41	2.0	40	93	2	139	32	22	18	26	1.97
53894097--53894253	44	3.7	43	68	15	112	32	23	19	24	1.97
53897539--53897641	29	3.6	29	80	2	100	28	33	17	21	1.96
53901107--53901377	135	2.0	135	99	0	533	30	24	19	25	1.98
53905685--53905787	29	3.6	27	81	5	98	29	33	16	21	1.95
53908976--53909207	50	4.6	50	75	8	211	30	25	18	26	1.98
53909026--53909253	50	4.5	50	78	3	197	30	25	17	25	1.98
53908971--53909207	101	2.4	100	81	2	260	30	25	18	25	1.98
53908976--53909262	151	1.9	151	89	1	450	30	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53911081--53911154	29	2.6	29	89	4	105	25	16	32	25	1.96
53911190--53911220	2	15.5	2	100	0	62	48	0	0	51	1.00
53914508--53914674	40	4.2	40	81	2	176	24	27	22	25	2.00
53914524--53914674	80	1.9	79	83	6	198	23	27	22	25	2.00
53922530--53922696	40	4.2	40	81	2	176	24	27	22	25	2.00
53922546--53922696	80	1.9	79	83	6	198	23	27	22	25	2.00
53929048--53929146	40	2.5	39	83	1	117	22	25	29	23	1.99
53936302--53936485	40	4.6	40	77	4	138	22	23	29	23	1.99
53936307--53936454	79	1.9	80	81	4	183	21	24	31	22	1.99
53940182--53940255	29	2.6	29	89	4	105	25	16	32	25	1.96
53952547--53952590	21	2.1	21	91	8	72	43	11	9	36	1.72
53958732--53958907	46	3.8	46	78	10	187	21	21	28	28	1.99
53969522--53969622	28	3.5	28	86	6	114	29	26	13	29	1.94
53978778--53978947	40	4.2	40	85	3	225	21	28	24	25	1.99
53985822--53985881	30	2.0	30	83	0	75	28	21	8	41	1.82
53986897--53986933	19	2.0	18	89	5	56	18	18	8	54	1.68
53989430--53989602	46	3.7	46	79	10	208	21	20	27	29	1.98
53989427--53989597	93	1.8	93	93	0	297	21	21	28	28	1.98
53989827--53989864	19	2.0	20	85	15	53	36	0	23	39	1.55
53997009--53997134	46	2.7	46	91	0	198	22	21	26	30	1.99
53997358--53997395	19	2.0	20	85	15	53	36	0	23	39	1.55
54000079--54000120	12	3.8	11	81	9	50	14	9	23	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54000704--54000756	19	2.7	20	83	11	65	47	15	7	30	1.73
54000680--54000762	20	4.2	20	71	11	64	43	14	7	34	1.73
54000900--54000938	20	2.0	20	89	0	60	46	12	10	30	1.75
54002992--54003080	44	2.0	44	93	4	153	30	12	13	43	1.81
54003772--54004065	120	2.5	118	79	9	294	36	7	19	36	1.81
54003966--54004004	20	2.0	20	85	10	53	30	12	17	38	1.88
54006927--54007056	40	3.3	39	76	8	136	23	27	23	24	2.00
54006943--54007093	40	3.8	40	78	6	146	21	26	24	27	2.00
54029525--54029558	12	2.8	12	81	0	50	61	0	23	14	1.33
54040125--54040224	50	2.0	50	94	0	173	50	17	10	23	1.75
54049817--54049851	14	2.5	14	100	0	70	31	0	14	54	1.40
54058325--54058485	29	5.6	29	88	0	214	24	16	32	26	1.96
54058325--54058513	87	2.2	87	81	3	211	24	16	31	26	1.97
54060758--54060800	13	3.1	14	86	10	61	2	20	2	74	1.04
54060756--54060864	6	17.3	6	72	16	53	4	20	3	71	1.19
54062219--54062266	20	2.5	20	86	3	62	64	2	6	27	1.28
54062290--54062319	15	2.0	15	93	0	51	40	10	0	50	1.36
54063567--54063624	29	2.0	28	93	3	98	46	13	8	31	1.74
54064999--54065088	28	3.2	28	64	17	69	22	8	27	41	1.83
54064996--54065115	56	2.2	56	95	1	215	23	7	27	41	1.81
54070893--54070933	21	1.9	22	85	5	57	26	4	21	46	1.72
54074015--54074178	42	3.9	42	81	2	195	27	24	15	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54079364--54079543	40	4.5	40	86	5	222	25	20	26	27	1.99
54088770--54088964	50	3.8	50	75	5	185	25	16	24	33	1.96
54088774--54088958	101	1.8	102	85	2	264	24	15	25	34	1.95
54089163--54089192	16	1.9	15	93	6	51	43	0	23	33	1.54
54098302--54098335	15	2.2	15	94	5	59	52	35	0	11	1.38
54098302--54098335	8	4.4	8	92	7	61	52	35	0	11	1.38
54104102--54104178	29	2.7	29	87	4	102	22	20	27	29	1.98
54111026--54111198	46	3.8	45	77	10	179	21	21	27	28	1.99
54111023--54111194	93	1.8	93	91	0	281	22	22	27	27	1.99
54113984--54114173	40	4.8	40	85	6	147	24	27	22	25	2.00
54114005--54114225	79	2.8	78	81	10	261	24	26	22	26	2.00
54114005--54114225	40	5.6	39	87	6	270	24	26	22	26	2.00
54117547--54117602	15	3.7	15	88	7	87	12	16	10	60	1.58
54119536--54119711	46	3.8	46	78	10	187	22	21	27	29	1.99
54119533--54119704	93	1.8	93	91	0	281	22	21	27	28	1.99
54122518--54122563	21	2.2	21	100	0	92	26	13	19	41	1.88
54122620--54122695	29	2.6	30	91	4	120	18	18	30	32	1.95
54128698--54128747	19	2.7	19	82	14	61	54	0	4	42	1.19
54129397--54129527	41	3.2	40	82	4	138	35	20	22	21	1.96
54130989--54131040	14	3.8	13	77	12	52	59	3	1	34	1.27
54131202--54131246	23	2.0	23	90	0	72	28	33	4	33	1.77
54135215--54135415	42	4.7	43	86	1	280	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54135191--54135415	85	2.6	85	86	2	308	25	19	28	27	1.98
54136783--54136862	43	1.9	41	87	5	115	62	0	20	17	1.33
54136800--54136880	41	2.0	40	82	7	99	61	1	22	14	1.40
54138447--54138490	20	2.2	20	84	8	54	36	9	4	50	1.55
54156934--54157142	40	5.3	40	87	1	251	23	26	24	24	2.00
54156967--54157142	79	2.2	80	87	1	246	25	26	23	24	2.00
54158814--54158997	40	4.6	39	75	6	138	26	23	27	22	2.00
54158854--54159042	80	2.4	81	77	4	186	23	24	29	22	1.99
54165956--54166104	80	1.9	80	81	2	183	22	30	24	22	1.99
54165997--54166104	40	2.7	38	85	8	128	21	29	25	23	1.99
54167849--54168017	38	4.4	40	85	7	197	24	26	24	24	2.00
54169685--54169868	40	4.6	39	75	6	138	26	23	27	22	2.00
54169725--54169913	80	2.4	81	77	4	186	23	24	29	22	1.99
54177802--54177985	40	4.6	39	75	6	138	26	23	27	22	2.00
54177842--54178030	80	2.4	81	77	4	186	23	24	29	22	1.99
54185706--54185749	19	2.4	19	85	7	56	50	0	9	40	1.34
54190845--54190917	35	2.1	35	92	0	119	17	24	28	28	1.98
54193725--54193904	40	4.5	39	77	10	161	27	22	26	23	1.99
54201753--54201923	40	4.3	39	77	10	159	28	21	26	23	1.99
54207383--54207415	16	2.1	15	94	5	57	66	0	3	30	1.06
54208810--54208856	23	2.0	23	100	0	94	25	12	8	53	1.67
54211945--54212070	50	2.6	49	83	6	148	30	29	15	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54214241--54214309	14	4.8	14	77	13	68	62	17	11	8	1.53
54214241--54214308	30	2.3	29	85	12	95	61	17	11	8	1.54
54215884--54215919	17	2.1	17	100	0	72	36	33	13	16	1.89
54217330--54217505	50	3.5	49	81	7	185	29	26	17	26	1.98
54217330--54217516	101	1.9	99	85	4	259	28	27	17	25	1.98
54226957--54226988	13	2.4	14	94	5	57	53	9	0	37	1.34
54230257--54230597	48	7.1	48	97	0	637	35	6	27	30	1.81
54230744--54230852	37	2.9	37	94	0	191	23	19	30	26	1.98
54232126--54232585	40	11.4	40	89	0	641	22	21	29	25	1.99
54235876--54236216	48	7.1	48	98	0	646	35	5	27	31	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328