genome.fa.s7.2.7.7.80.10.50.1000.185.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  185  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55119267--55119333	25	2.7	24	88	4	89	26	28	23	20	1.99
55119267--55119349	25	3.4	24	82	11	80	30	24	22	22	1.99
55121864--55122088	27	8.3	27	85	2	236	28	23	8	40	1.83
55121864--55122088	81	2.8	81	83	1	272	28	23	8	40	1.83
55122087--55122269	80	2.3	81	82	8	214	39	20	10	28	1.87
55122087--55122269	27	6.8	27	77	6	167	39	20	10	28	1.87
55122145--55122324	54	3.3	54	80	4	175	41	19	8	30	1.82
55122171--55122331	27	5.9	27	75	10	105	40	18	9	31	1.83
55123254--55123322	25	2.8	25	89	6	97	24	26	24	24	2.00
55123254--55123349	25	4.0	23	84	9	86	27	23	23	25	2.00
55123469--55123602	42	3.2	42	94	0	241	31	14	19	34	1.92
55123626--55123740	31	3.7	31	90	1	178	26	16	27	28	1.97
55128495--55128645	56	2.7	54	86	6	196	27	33	18	19	1.96
55135215--55135365	40	3.8	39	85	6	180	22	25	29	21	1.99
55140231--55140344	39	2.9	39	93	0	192	18	24	31	25	1.97
55143004--55143044	20	2.0	20	85	4	55	73	0	7	19	1.07
55143868--55143976	54	2.0	54	98	0	209	41	13	22	22	1.89
55144685--55144746	29	2.1	30	82	11	76	53	17	0	29	1.44
55147241--55147268	3	9.3	3	100	0	56	32	0	0	67	0.91
55149870--55149907	15	2.7	14	84	11	51	5	23	2	68	1.23
55150807--55150833	3	9.0	3	100	0	54	66	0	33	0	0.92
55151612--55151647	17	2.1	18	89	5	56	0	27	2	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55151617--55151651	15	2.3	15	90	0	52	0	22	2	74	0.95
55153076--55153166	42	2.2	43	80	13	109	28	24	17	29	1.97
55153107--55153198	42	2.2	42	81	11	109	29	28	15	27	1.96
55157152--55157323	93	1.8	93	89	0	272	27	27	21	23	1.99
55157144--55157319	46	3.8	46	77	12	180	28	27	21	23	1.99
55157195--55157338	46	3.1	46	74	14	143	29	27	20	23	1.99
55161506--55161594	30	3.0	30	80	8	101	57	15	16	10	1.65
55161506--55161585	15	5.4	15	80	7	92	58	13	17	10	1.62
55161517--55161594	15	5.2	15	78	9	79	56	15	16	11	1.67
55164495--55164661	43	3.7	42	74	11	154	29	27	20	21	1.98
55164503--55164671	93	1.8	90	88	3	257	28	27	21	21	1.99
55167659--55167890	49	4.7	49	82	3	293	31	27	17	24	1.97
55167659--55167889	100	2.3	99	85	2	311	31	26	17	24	1.97
55170534--55170706	46	3.8	46	79	14	214	20	21	29	28	1.98
55173630--55173708	15	5.4	15	77	10	83	10	17	13	58	1.63
55173621--55173707	29	3.0	29	81	8	95	10	17	16	56	1.67
55176090--55176265	46	3.8	46	80	12	225	21	21	28	28	1.98
55176087--55176257	93	1.8	93	96	0	315	21	21	29	28	1.98
55180316--55180545	42	5.5	42	75	8	168	27	18	24	29	1.98
55180321--55180545	85	2.7	84	84	5	269	27	19	24	29	1.98
55187363--55187478	42	2.8	41	79	7	110	29	25	14	31	1.95
55192168--55192208	5	8.8	5	82	12	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55192137--55192179	17	2.4	18	80	7	61	53	0	4	41	1.21
55192831--55192898	34	2.0	34	91	0	109	38	13	29	19	1.89
55195889--55196019	30	4.5	29	83	8	149	27	26	14	31	1.95
55195888--55196019	58	2.3	58	84	4	167	27	27	14	31	1.95
55203839--55203969	30	4.5	30	86	8	171	28	25	13	32	1.94
55203838--55203969	58	2.3	58	85	4	176	28	26	13	31	1.94
55207332--55207405	29	2.6	29	95	0	139	27	14	31	27	1.95
55207389--55207464	29	2.6	29	78	0	89	22	19	35	22	1.96
55207332--55207464	58	2.3	58	80	2	133	24	17	33	24	1.96
55209520--55209708	54	3.5	53	82	5	202	23	24	16	35	1.94
55209681--55209799	46	2.6	45	93	4	195	23	25	14	36	1.92
55209666--55209934	91	2.9	92	75	10	253	22	24	18	34	1.96
55209939--55210018	41	2.0	41	85	5	108	26	25	12	36	1.91
55210552--55210610	29	2.0	29	87	6	84	35	20	5	38	1.75
55220360--55220440	29	2.8	29	96	1	146	25	30	14	28	1.95
55229960--55230133	55	3.2	54	78	8	158	24	24	16	35	1.95
55229960--55230143	54	3.4	53	78	8	183	25	23	15	35	1.94
55230122--55230221	45	2.2	46	87	3	139	25	25	15	35	1.94
55230122--55230241	47	2.6	45	88	5	161	24	25	15	35	1.94
55230368--55230489	47	2.6	47	85	2	174	26	21	13	39	1.90
55230092--55230575	248	2.0	246	91	2	792	24	23	17	34	1.96
55242998--55243251	47	5.3	48	91	3	354	31	8	30	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55246931--55246991	30	2.0	30	83	0	77	29	22	6	40	1.79
55248960--55249038	29	2.8	29	94	5	137	43	7	11	37	1.69
55251734--55251885	43	3.5	42	75	10	121	35	23	17	23	1.95
55254139--55254212	27	2.7	28	95	0	107	36	17	17	28	1.93
55260191--55260271	28	3.0	27	89	3	126	37	17	16	29	1.91
55271620--55271703	2	42.5	2	92	2	143	46	0	0	53	1.00
55272628--55272673	11	4.2	11	81	13	51	13	0	6	80	0.89
55272626--55272672	21	2.2	20	82	17	60	12	0	8	78	0.95
55274792--55274822	16	1.9	16	93	0	53	35	22	0	41	1.54
55274789--55274828	20	2.0	20	85	0	53	37	22	0	40	1.54
55276372--55276470	28	3.5	29	83	6	114	30	27	15	27	1.96
55284378--55284476	28	3.5	29	83	6	114	30	27	15	27	1.96
55287561--55287659	28	3.5	29	83	6	114	30	27	15	27	1.96
55295570--55295668	28	3.5	29	83	6	114	30	27	15	27	1.96
55297469--55297669	108	1.8	110	85	6	284	22	24	17	35	1.95
55297443--55297676	55	4.4	53	75	13	214	21	23	17	37	1.94
55303280--55303396	48	2.4	48	91	0	189	31	5	31	30	1.82
55303518--55303656	74	1.9	74	98	0	269	26	17	30	25	1.98
55303529--55303673	37	3.9	37	90	3	229	24	18	31	25	1.98
55304939--55305292	40	8.9	40	95	0	611	20	22	31	25	1.98
55308611--55308713	48	2.1	48	94	0	179	33	6	30	30	1.83
55308849--55309000	74	2.1	74	96	0	277	26	18	29	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55308860--55309004	37	3.9	37	91	3	238	24	19	30	25	1.98
55310270--55310623	40	8.9	40	95	0	611	20	22	31	25	1.98
55313942--55314044	48	2.1	48	96	0	188	33	6	29	30	1.83
55314180--55314331	74	2.1	74	96	0	277	26	18	29	25	1.98
55314191--55314335	37	3.9	37	91	3	238	24	19	30	25	1.98
55318976--55319023	23	2.0	23	88	4	69	20	20	10	47	1.79
55319152--55319346	55	3.6	52	81	9	214	22	25	17	35	1.95
55320763--55320814	4	13.5	4	78	15	56	19	1	1	76	0.97
55320768--55320812	15	3.1	15	87	3	65	15	2	2	80	0.92
55320763--55320814	19	2.7	19	79	8	61	19	1	1	76	0.97
55322781--55322823	19	2.3	19	100	0	86	27	23	37	11	1.89
55323705--55324192	243	2.0	242	93	1	843	30	26	19	23	1.98
55328418--55328669	49	5.1	49	98	0	468	29	8	30	30	1.87
55328418--55328699	147	1.9	146	90	1	438	30	8	30	30	1.88
55328740--55328826	37	2.3	36	94	5	147	20	19	33	26	1.97
55330711--55330982	40	6.8	40	97	0	481	23	20	30	26	1.98
55331727--55331824	41	2.4	41	80	11	112	24	25	24	25	2.00
55331769--55331866	40	2.5	40	75	12	94	26	26	26	20	1.99
55334600--55334730	64	2.0	64	100	0	226	29	9	31	29	1.88
55334593--55335039	49	9.1	49	73	19	269	29	8	31	30	1.88
55334650--55334681	15	2.1	15	100	0	64	31	12	28	28	1.93
55334665--55335039	98	4.0	98	69	19	346	29	9	31	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55334780--55334846	33	2.0	33	100	0	134	26	5	34	32	1.81
55334731--55334895	82	2.0	82	100	0	330	27	8	33	30	1.87
55334679--55335039	131	2.6	136	90	7	552	29	8	31	29	1.88
55334665--55334990	180	1.8	180	96	0	607	29	8	31	30	1.88
55334813--55335041	49	4.7	49	96	0	395	30	9	30	29	1.88
55335110--55335196	37	2.3	36	94	5	147	20	19	33	26	1.97
55352534--55352608	29	2.6	29	89	4	107	26	16	32	25	1.96
55356951--55357187	49	4.8	49	88	3	330	33	10	27	28	1.89
55356951--55357187	100	2.4	99	90	1	359	33	10	27	28	1.89
55363908--55363950	2	22.0	2	90	4	70	48	2	0	48	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328