genome.fa.s7.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  116  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32872014--32872363	175	2.0	175	98	0	682	32	8	17	42	1.78
32874087--32874221	26	5.2	25	92	7	209	34	4	23	37	1.75
32874087--32874221	51	2.6	51	90	8	211	34	4	23	37	1.75
32875838--32875950	27	4.2	27	78	3	102	17	22	22	38	1.94
32875840--32875946	54	2.0	54	83	7	137	18	21	21	38	1.94
32877438--32877476	16	2.5	16	91	4	62	61	0	10	28	1.28
32893198--32893259	31	2.0	31	90	0	97	37	12	17	32	1.88
32893267--32893307	20	2.2	20	86	8	59	24	14	0	60	1.34
32896567--32896627	32	1.9	32	96	0	113	21	4	16	57	1.58
32898969--32899007	6	6.5	6	100	0	78	30	0	0	69	0.89
32901070--32901125	21	2.7	21	88	0	85	28	7	33	30	1.84
32915911--32915960	23	2.2	23	92	0	82	22	44	16	18	1.87
32922667--32922723	30	1.9	29	82	3	69	15	17	7	59	1.57
32931238--32931548	46	7.0	46	88	7	444	22	23	15	38	1.92
32933976--32934043	30	2.3	30	84	5	84	27	19	5	47	1.72
32939020--32939060	18	2.3	18	91	0	64	34	14	9	41	1.79
32940724--32940877	43	3.6	43	76	5	141	29	22	16	30	1.96
32943439--32943488	19	2.6	19	93	0	82	38	22	10	30	1.86
32948476--32948578	43	2.4	43	80	4	127	33	24	14	27	1.94
32951017--32951173	43	3.6	44	78	5	151	32	26	17	24	1.96
32951017--32951176	86	1.9	85	80	6	189	32	26	17	23	1.97
32955603--32955684	40	2.0	40	100	0	164	23	21	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32956154--32956185	2	16.0	2	93	0	55	46	0	3	50	1.17
32958334--32958513	43	4.2	41	74	10	146	40	25	13	20	1.89
32958314--32958522	85	2.4	86	81	0	258	41	26	12	19	1.87
32961999--32962028	15	2.0	15	93	0	51	36	13	3	46	1.60
32965805--32965932	35	3.6	35	87	1	139	43	32	7	15	1.76
32967226--32967441	35	6.2	34	82	6	202	34	4	30	31	1.78
32972671--32972736	21	3.2	20	73	12	62	24	18	19	37	1.93
32972727--32972801	39	1.9	39	97	0	141	13	28	22	36	1.92
32972788--32972815	14	2.0	14	100	0	56	21	28	14	35	1.92
32972749--32972854	53	2.0	53	100	0	212	15	26	20	37	1.92
32972802--32972880	39	2.0	39	90	0	122	15	25	21	37	1.92
32979076--32980157	369	3.0	364	86	4	1511	39	13	21	25	1.90
32981829--32981944	57	2.0	57	81	8	135	46	16	16	20	1.84
32982630--32982676	25	1.9	24	87	12	69	51	8	19	21	1.73
32985655--32985702	25	2.0	25	87	4	71	16	25	18	39	1.91
32992857--32992898	20	2.0	21	86	4	59	85	9	2	2	0.77
33002445--33002482	18	2.0	20	90	10	62	36	0	5	57	1.21
33019036--33019175	71	2.0	71	100	0	280	35	1	7	56	1.36
33019064--33019190	3	41.7	3	80	9	123	33	0	3	61	1.20
33019470--33019532	31	2.1	28	82	8	72	41	0	6	52	1.27
33019928--33019984	25	2.2	25	87	3	78	24	7	21	47	1.75
33020457--33020525	3	22.7	3	97	2	129	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33020620--33020646	3	9.0	3	100	0	54	33	0	0	66	0.92
33020744--33020786	16	2.8	15	86	6	59	30	6	0	62	1.21
33020852--33021047	3	64.7	3	72	11	96	32	9	2	55	1.45
33020934--33020965	13	2.6	13	90	9	50	25	6	3	65	1.31
33021011--33021093	12	6.8	13	79	8	61	32	6	1	60	1.29
33021125--33021192	22	3.0	22	80	6	75	19	5	5	69	1.31
33022408--33022438	15	2.1	15	100	0	62	67	0	19	12	1.22
33024013--33024043	12	2.5	12	94	5	53	48	0	16	35	1.46
33024308--33024341	15	2.3	15	90	5	52	52	0	11	35	1.38
33035129--33035238	26	4.2	26	91	0	175	35	24	6	33	1.81
33038260--33038315	20	2.9	19	84	7	78	32	0	5	62	1.18
33038268--33038307	11	3.9	11	78	15	50	27	0	7	65	1.20
33040777--33041075	150	2.0	152	84	2	388	31	14	18	35	1.91
33043423--33043460	20	1.9	20	88	0	58	18	0	18	63	1.32
33044747--33044779	14	2.4	14	95	5	59	12	0	0	87	0.53
33056993--33057048	24	2.4	24	82	11	64	62	0	3	33	1.12
33061035--33061088	28	1.9	28	100	0	108	37	0	20	42	1.52
33069870--33069997	64	2.0	64	92	0	211	14	27	11	46	1.80
33070698--33070728	11	2.8	11	95	0	53	29	0	3	67	1.06
33072994--33073061	32	2.1	32	81	10	77	23	4	16	55	1.58
33073070--33073130	32	1.9	32	89	0	95	29	4	18	47	1.69
33074562--33074733	93	1.8	93	96	0	317	27	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33074555--33074730	46	3.8	46	79	12	216	28	29	21	20	1.98
33082128--33082299	93	1.8	93	96	0	317	27	29	21	20	1.98
33082121--33082296	46	3.8	46	79	12	216	28	29	21	20	1.98
33084429--33084500	22	3.2	22	64	21	58	30	8	19	41	1.81
33084421--33084549	46	2.8	46	91	0	204	27	6	21	43	1.78
33084708--33084743	18	1.9	19	88	5	56	47	0	0	52	1.00
33084950--33085016	14	4.7	14	90	3	98	37	13	7	41	1.73
33091460--33091487	8	3.5	8	100	0	56	78	0	0	21	0.75
33092125--33092158	15	2.1	16	89	10	52	52	8	0	38	1.33
33105858--33105928	31	2.3	31	95	2	124	52	18	14	15	1.75
33108350--33108390	15	2.8	15	85	14	59	60	0	2	36	1.10
33108595--33108913	169	1.9	163	82	6	399	50	4	6	39	1.48
33109616--33109640	2	12.5	2	100	0	50	48	0	0	52	1.00
33110552--33110615	24	2.6	24	80	9	67	64	6	0	29	1.18
33111397--33111461	29	2.2	31	86	5	89	55	12	3	29	1.52
33114800--33115776	4	246.2	4	88	1	1151	26	5	23	44	1.74
33120533--33120584	20	2.8	19	78	21	65	38	1	7	51	1.42
33122876--33123016	70	2.0	71	86	4	196	53	9	5	30	1.57
33131607--33131645	19	2.1	18	85	4	51	56	0	0	43	0.99
33131607--33131645	6	6.3	6	85	5	51	56	0	0	43	0.99
33132121--33132165	17	2.6	18	82	6	58	62	6	4	26	1.39
33140354--33140439	43	2.0	43	82	13	106	55	12	1	30	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33143708--33143749	22	1.9	22	90	0	66	45	23	0	30	1.53
33146104--33146150	25	1.9	25	95	4	87	59	0	0	40	0.97
33154927--33154987	31	2.0	31	90	0	95	14	40	27	16	1.88
33163313--33163348	18	2.0	18	89	10	56	58	0	2	38	1.13
33164055--33164097	10	4.4	9	80	13	50	74	2	4	18	1.10
33168509--33168551	10	4.4	9	80	13	50	74	2	4	18	1.10
33175417--33175456	18	2.2	18	86	0	53	15	22	42	20	1.88
33177894--33177932	17	2.2	18	86	4	53	15	2	28	53	1.55
33189815--33189873	29	2.0	29	96	0	109	32	16	32	18	1.94
33206426--33206471	15	3.0	16	81	6	51	67	2	0	30	1.03
33211459--33211489	14	2.2	14	94	0	53	35	19	9	35	1.85
33217497--33217522	5	5.2	5	100	0	52	80	0	0	19	0.71
33223149--33223186	14	2.6	15	84	16	53	44	5	7	42	1.56
33224545--33224573	14	2.1	14	100	0	58	34	0	13	51	1.42
33227889--33227946	29	2.0	29	86	0	80	43	6	17	32	1.75
33230223--33230262	7	5.7	7	100	0	80	45	42	0	12	1.42
33237825--33237880	26	2.2	26	100	0	112	39	7	35	17	1.78
33242825--33242864	20	2.0	20	95	0	71	27	20	7	45	1.78
33244335--33244359	2	12.5	2	100	0	50	48	0	0	52	1.00
33250163--33250303	10	15.4	9	67	24	66	29	4	2	63	1.25
33250208--33250255	23	2.0	25	88	8	73	33	2	0	64	1.05
33250217--33250266	18	2.9	17	83	16	59	34	2	0	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33251817--33251872	18	3.1	18	94	0	94	37	10	21	30	1.87
33252686--33252721	12	2.9	12	91	4	54	58	0	25	16	1.38
33256497--33256809	46	6.8	46	90	1	430	38	14	25	21	1.92
33258988--33259020	3	11.0	3	100	0	66	66	0	0	33	0.92
33262636--33262677	21	2.0	22	86	13	61	57	0	7	35	1.26
33265076--33265204	46	2.8	47	89	1	179	22	14	28	34	1.94
33266218--33266261	18	2.4	18	96	3	79	34	20	4	40	1.73
33266832--33266941	26	4.2	25	89	6	166	33	5	23	37	1.78
33266832--33266941	52	2.1	52	93	0	184	33	5	23	37	1.78
33268382--33268456	26	2.8	26	81	4	78	34	20	12	33	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328