genome.fa.s7.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  122  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34863298--34863489	40	4.8	40	84	3	210	21	27	25	26	1.99
34867267--34867330	15	4.4	15	77	16	64	9	10	14	65	1.47
34867262--34867330	30	2.4	29	79	18	81	8	10	17	63	1.49
34869467--34869691	49	4.5	49	86	2	279	25	17	27	29	1.98
34872677--34872787	49	2.3	49	82	4	145	27	27	23	21	1.99
34874796--34874824	2	14.5	2	100	0	58	51	0	0	48	1.00
34885852--34886118	20	13.4	20	62	5	85	33	19	30	16	1.94
34885894--34886124	118	1.9	120	85	3	324	32	19	31	16	1.94
34885886--34886124	40	6.0	40	81	1	266	32	19	30	17	1.94
34888522--34888611	45	2.0	44	97	2	171	41	13	11	34	1.80
34894452--34894525	24	3.1	24	94	0	121	31	5	41	21	1.76
34895957--34896068	27	4.2	26	78	7	116	16	22	22	38	1.93
34895957--34896068	54	2.1	54	84	3	145	16	22	22	38	1.93
34902306--34902379	24	3.1	24	90	0	112	32	5	40	21	1.76
34903809--34903913	27	3.9	27	82	9	115	18	22	20	38	1.94
34906614--34906683	22	3.3	21	78	9	81	37	18	25	18	1.94
34907333--34907366	13	2.6	14	90	9	54	5	47	23	23	1.73
34908434--34908569	46	2.9	48	79	9	147	25	30	16	27	1.96
34908486--34908609	47	2.6	48	78	16	143	24	30	18	26	1.98
34920100--34920207	26	4.2	26	92	0	180	37	23	7	32	1.82
34920644--34920823	43	4.2	43	87	0	243	30	31	17	21	1.96
34921439--34921552	23	5.0	23	81	4	126	38	21	6	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34926415--34927395	23	42.9	23	74	9	560	37	22	5	33	1.78
34926367--34927395	183	5.6	183	80	8	919	37	22	5	33	1.78
34926430--34926971	206	2.6	206	87	4	772	37	22	5	34	1.77
34926683--34927395	160	4.5	160	82	5	779	37	22	5	33	1.79
34928593--34928626	10	3.4	10	100	0	68	44	11	0	44	1.40
34930303--34930349	3	15.7	3	100	0	94	31	0	0	68	0.90
34930733--34930798	7	9.4	7	79	8	55	27	1	24	46	1.61
34931144--34931275	40	3.3	40	88	1	183	24	21	21	33	1.97
34939257--34939320	23	2.7	23	82	2	74	34	12	12	40	1.81
34941315--34941376	26	2.5	26	81	5	74	22	12	1	62	1.38
34946105--34946146	21	2.0	21	90	0	66	38	23	23	14	1.92
34953879--34954328	43	10.2	43	64	20	178	30	20	21	27	1.98
34953856--34954328	133	3.6	132	95	0	829	30	20	21	27	1.98
34954491--34954743	45	5.7	45	87	1	359	31	20	23	24	1.98
34954491--34954743	89	2.8	89	94	3	431	31	20	23	24	1.98
34954491--34954746	134	1.9	133	87	2	370	32	20	23	24	1.98
34954710--34954883	88	2.0	88	89	5	273	31	22	16	28	1.96
34956195--34956256	26	2.5	26	76	10	67	22	11	1	64	1.34
34960993--34961034	21	2.0	21	90	0	66	38	23	23	14	1.92
34968746--34969218	133	3.6	132	95	0	820	30	20	21	27	1.98
34969381--34969638	45	5.8	45	87	1	376	31	20	24	24	1.98
34969381--34969635	90	2.8	90	96	1	460	30	20	24	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34969602--34969775	88	2.0	88	89	3	271	31	22	17	29	1.96
34971088--34971149	26	2.5	26	76	10	67	22	11	1	64	1.34
34978144--34978177	4	8.2	4	93	6	59	50	2	0	47	1.16
34981181--34981219	2	19.5	2	100	0	78	51	0	0	48	1.00
34987976--34988055	29	2.7	30	86	3	108	22	6	43	27	1.77
34987967--34988064	30	3.3	30	85	2	144	18	5	47	28	1.69
34988719--34989309	87	6.6	88	80	8	425	37	18	16	28	1.92
34989113--34989145	14	2.4	14	94	0	57	63	6	12	18	1.48
34988892--34989309	179	2.3	180	82	8	476	36	17	17	28	1.93
34989222--34989657	148	3.0	146	95	1	791	32	21	16	30	1.95
34989222--34989671	146	3.1	146	92	3	760	32	20	16	30	1.95
34989770--34990011	73	3.3	73	89	1	358	33	21	17	26	1.96
34989843--34990749	164	5.5	161	77	10	908	34	19	16	28	1.94
34989682--34990669	237	4.0	235	79	13	937	34	20	17	28	1.95
34990155--34990189	14	2.5	14	95	0	61	57	2	20	20	1.54
34990081--34990736	84	7.9	81	72	15	380	34	19	16	29	1.94
34990335--34990651	75	4.1	74	72	17	257	34	19	14	30	1.92
34990649--34990683	14	2.6	14	90	4	54	51	5	14	28	1.65
34990590--34990748	87	1.8	87	87	5	241	33	20	16	28	1.95
34997395--34997462	37	1.9	34	82	14	84	63	1	4	30	1.23
34997394--34997462	16	3.9	17	71	25	54	62	1	4	31	1.24
34997552--34997611	23	2.9	20	70	15	59	56	5	6	31	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34997664--34997725	14	4.1	14	76	16	54	58	1	4	35	1.29
34997596--34997729	25	5.3	25	73	10	74	55	4	5	33	1.44
34997642--34997741	25	3.9	27	73	15	77	55	4	7	34	1.46
34997761--34997806	25	1.9	25	86	8	69	60	0	4	34	1.16
34998282--34998335	18	3.3	18	66	28	57	22	7	48	22	1.75
34998277--34998375	30	3.3	30	89	0	162	18	6	48	27	1.71
34999056--34999597	87	6.0	90	79	8	450	37	18	16	27	1.92
34999401--34999433	14	2.4	14	94	0	57	63	6	12	18	1.48
34999093--34999597	91	5.7	86	79	10	403	37	18	16	28	1.92
34999504--34999893	73	5.3	74	83	7	499	34	19	16	29	1.94
34999526--34999893	146	2.5	146	95	1	639	32	20	16	30	1.95
34999818--34999977	86	1.8	87	88	5	243	35	18	16	29	1.93
35000025--35000358	77	4.5	76	85	5	459	31	20	16	31	1.94
35000025--35000371	145	2.3	148	85	3	475	33	19	15	31	1.93
35000369--35000584	99	2.2	98	88	5	310	43	17	16	23	1.88
35000537--35000598	14	4.6	14	90	6	92	62	6	14	16	1.50
35000537--35000598	27	2.3	28	86	5	92	62	6	14	16	1.50
35000439--35000666	114	2.0	114	87	0	330	42	17	16	23	1.89
35000578--35000744	73	2.3	73	87	2	237	34	20	17	27	1.95
35008631--35008729	30	3.3	30	86	0	153	19	6	47	27	1.72
35013951--35014117	40	4.2	40	82	2	185	24	26	22	26	2.00
35021980--35022147	40	4.2	40	82	1	185	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35024640--35024684	15	2.8	15	86	10	54	57	0	8	33	1.30
35025351--35025388	11	3.2	12	85	11	51	81	0	15	2	0.80
35036454--35036503	21	2.5	20	83	9	57	64	2	2	32	1.16
35036605--35036683	29	2.7	29	80	11	81	32	11	8	46	1.71
35037501--35037540	15	2.6	16	88	7	57	50	0	0	50	1.00
35043586--35043621	16	2.1	18	90	10	58	13	8	0	77	0.98
35043661--35043694	10	3.5	10	96	4	61	76	0	0	23	0.79
35044276--35044365	9	10.0	9	76	8	58	37	5	0	56	1.23
35044315--35044706	3	130.7	3	71	19	220	32	2	3	62	1.24
35044513--35044788	147	1.9	146	87	3	358	31	2	4	61	1.29
35052560--35052590	10	3.0	10	95	4	53	0	29	0	70	0.87
35052604--35052650	9	5.1	9	82	12	51	6	12	4	76	1.12
35056388--35056556	46	3.7	46	76	16	170	21	20	28	30	1.98
35056385--35056509	47	2.7	45	83	13	148	21	20	28	29	1.98
35056385--35056555	93	1.8	93	90	5	274	21	20	28	29	1.98
35075697--35075751	15	3.7	15	79	20	53	12	7	18	61	1.53
35078297--35078420	46	2.7	46	85	12	157	29	19	29	21	1.98
35078344--35078566	46	4.7	48	74	13	162	26	19	30	23	1.98
35088495--35088536	22	2.0	21	85	4	57	71	2	14	11	1.24
35090656--35090717	3	20.7	3	83	6	72	35	4	0	59	1.19
35090754--35090854	23	4.2	25	70	25	74	35	1	3	58	1.28
35090755--35090848	47	2.0	45	84	10	118	36	2	4	57	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35090967--35091022	23	2.6	23	83	8	64	33	3	5	57	1.39
35090964--35091232	51	5.1	51	71	16	149	34	6	5	53	1.48
35090967--35091029	23	2.9	23	81	6	60	33	4	4	57	1.41
35091074--35091369	26	11.7	25	69	17	150	35	5	5	54	1.46
35095252--35095307	22	2.5	22	85	2	76	26	23	3	46	1.68
35095286--35095314	4	7.2	4	100	0	58	24	24	0	51	1.48
35103783--35103807	13	1.9	13	100	0	50	32	16	16	36	1.90
35105316--35105744	48	8.6	48	87	8	635	33	7	27	31	1.85
35105507--35105632	63	2.0	63	98	0	243	32	9	26	30	1.88
35105555--35105584	15	2.0	15	100	0	60	33	13	26	26	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328