genome.fa.s7.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  128  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36847680--36847725	18	2.6	18	96	0	83	43	0	6	50	1.28
36852902--36852931	14	2.1	14	100	0	60	36	26	0	36	1.57
36855315--36855497	79	2.3	81	83	8	241	25	27	21	25	2.00
36855315--36855496	40	4.6	39	82	9	217	25	27	21	24	2.00
36859453--36859535	30	2.8	30	85	7	116	32	16	18	32	1.93
36865298--36865395	28	3.5	28	84	4	108	29	16	24	29	1.96
36867371--36867505	43	3.1	43	75	10	116	25	16	24	34	1.95
36871774--36872295	260	2.0	260	100	0	1044	27	13	23	35	1.93
36875797--36875927	28	4.7	28	66	3	75	31	20	19	28	1.97
36881179--36881282	52	2.0	52	96	0	190	39	11	22	26	1.88
36901792--36901902	25	4.4	25	79	2	116	28	22	23	25	1.99
36901794--36901902	50	2.2	50	83	0	128	29	22	22	24	1.99
36907933--36907965	14	2.3	15	94	5	59	54	0	18	27	1.44
36908228--36908267	21	1.9	21	84	0	53	40	17	22	20	1.92
36913272--36913365	45	2.1	45	95	0	170	26	20	2	51	1.59
36914231--36914427	55	3.6	54	82	4	245	22	24	18	35	1.96
36914406--36914527	47	2.6	47	96	0	217	26	24	13	35	1.93
36921265--36921425	29	5.6	29	87	1	207	26	32	16	25	1.96
36924218--36924408	55	3.5	54	81	6	217	23	23	18	35	1.95
36924393--36924514	47	2.6	47	92	0	199	24	24	13	36	1.92
36924486--36924605	47	2.5	47	82	9	154	24	22	18	35	1.96
36929430--36929461	16	2.1	15	94	5	55	50	28	18	3	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36929709--36929773	28	2.3	28	92	5	105	33	29	7	29	1.85
36929879--36929968	28	3.2	28	81	7	112	20	22	22	35	1.96
36929879--36929993	27	4.1	27	79	9	108	19	22	20	37	1.94
36934991--36935196	40	5.2	40	79	4	186	24	27	22	25	2.00
36934987--36935196	80	2.7	80	81	3	230	25	26	21	26	2.00
36940231--36940278	8	6.0	8	85	0	69	45	22	25	6	1.75
36940235--36940278	16	2.8	16	92	0	79	40	25	27	6	1.80
36940525--36940589	28	2.3	28	92	5	105	33	29	7	29	1.85
36940695--36940757	28	2.2	29	88	8	94	22	22	23	31	1.98
36940705--36940768	28	2.2	28	86	2	83	25	25	18	31	1.98
36943660--36943976	48	6.7	47	73	14	217	28	20	28	23	1.99
36943660--36943926	93	2.9	93	82	10	316	27	20	28	22	1.99
36943665--36943928	49	5.6	47	74	12	204	27	21	28	22	1.99
36951943--36951983	22	2.0	20	85	9	55	70	9	4	14	1.30
36955498--36955552	21	2.6	21	88	2	83	32	16	7	43	1.75
36955726--36955764	19	2.0	20	85	9	55	17	23	10	48	1.78
36956423--36956480	20	2.8	21	74	10	57	34	24	12	29	1.91
36958050--36958087	20	1.9	20	88	0	58	34	2	10	52	1.50
36959713--36959781	28	2.5	28	95	2	122	43	27	10	18	1.82
36970693--36970774	43	1.9	42	82	9	103	29	14	24	31	1.95
36974100--36974146	21	2.2	20	85	14	60	17	4	0	78	0.90
36974118--36974151	15	2.2	16	89	5	52	11	5	0	82	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36976458--36976533	17	4.5	16	76	11	62	21	5	3	69	1.24
36977190--36977268	40	2.0	40	97	0	149	44	11	18	25	1.83
36979903--36980037	43	3.1	43	85	5	148	25	20	28	26	1.99
36979928--36980057	43	3.1	42	83	5	163	25	19	30	25	1.98
36996729--36996756	14	2.0	14	100	0	56	50	7	0	42	1.30
36997231--36997300	27	2.5	28	95	2	124	27	12	28	31	1.93
36998989--36999218	116	2.0	116	94	0	406	30	14	12	43	1.82
37004453--37004502	26	1.9	26	84	8	66	58	4	0	38	1.17
37016615--37016678	29	2.2	29	83	2	85	31	18	28	21	1.97
37024450--37024527	29	2.7	29	85	0	102	26	16	33	23	1.96
37041000--37041112	22	5.0	22	86	6	122	25	22	21	30	1.98
37045806--37045897	29	3.2	28	86	7	123	28	30	15	26	1.96
37046143--37046171	15	1.9	15	100	0	58	13	24	20	41	1.89
37046599--37046625	8	3.4	8	100	0	54	0	11	22	66	1.22
37049985--37050432	27	16.6	27	84	3	526	27	21	9	41	1.84
37051675--37051722	25	1.9	25	86	0	69	33	25	16	25	1.96
37051766--37051824	20	3.0	20	89	0	91	35	11	22	30	1.90
37051875--37051969	24	4.0	24	85	10	124	28	21	24	26	1.99
37051876--37051969	47	2.0	49	85	12	133	27	21	24	26	1.99
37052161--37052255	38	2.5	38	92	1	154	37	17	23	21	1.94
37064071--37064104	9	3.8	9	88	0	50	47	0	2	50	1.16
37067725--37067796	22	3.3	22	78	7	83	37	20	8	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37067714--37067819	44	2.4	44	90	0	158	37	20	7	33	1.81
37067741--37067819	22	3.6	22	77	0	86	39	21	6	32	1.79
37069437--37069608	93	1.8	93	96	0	317	27	29	21	20	1.98
37069430--37069605	46	3.8	46	79	12	216	28	29	21	20	1.98
37073970--37073998	2	15.0	2	92	7	51	51	0	0	48	1.00
37081143--37081233	45	2.0	45	100	0	182	15	26	20	37	1.93
37088971--37089030	14	4.3	14	70	8	50	28	5	23	43	1.74
37089289--37089447	53	3.0	53	81	0	192	35	13	22	28	1.92
37093527--37093551	12	2.1	12	100	0	50	32	0	24	44	1.54
37097523--37097573	25	2.0	25	100	0	102	41	11	19	27	1.86
37104323--37104430	44	2.4	44	87	3	144	29	23	13	33	1.93
37126601--37126652	21	2.5	21	87	6	70	59	26	5	7	1.48
37129270--37129308	19	2.1	19	85	0	51	38	2	15	43	1.60
37131371--37131491	46	2.6	45	88	5	163	31	18	28	21	1.97
37132863--37132902	21	2.0	21	95	5	73	10	40	30	20	1.85
37135588--37135622	18	1.9	18	94	0	61	85	0	8	5	0.73
37138683--37138861	77	2.3	78	82	2	209	25	22	27	25	2.00
37138683--37138844	39	4.2	39	84	4	193	25	20	27	26	1.99
37146802--37146962	39	4.2	39	82	1	198	23	19	29	27	1.98
37146802--37146957	77	2.0	77	83	1	177	24	19	28	27	1.98
37148473--37148563	46	2.0	45	95	2	164	27	6	27	38	1.81
37150780--37150851	36	2.0	36	100	0	144	22	33	11	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37151523--37151683	57	2.8	57	84	1	198	24	23	16	35	1.95
37151835--37151993	53	3.0	53	81	0	194	27	23	11	37	1.90
37154082--37154260	46	3.8	45	83	10	175	21	31	18	27	1.97
37155126--37155198	29	2.5	29	84	0	92	28	17	26	27	1.98
37162298--37162370	29	2.5	29	100	0	146	31	15	28	24	1.95
37162357--37162429	29	2.5	29	84	0	92	28	17	26	27	1.98
37168733--37168839	27	3.9	28	79	9	105	19	25	21	33	1.97
37168733--37168844	54	2.1	54	83	3	136	18	25	23	33	1.97
37173765--37173888	47	2.6	48	85	6	157	29	31	12	26	1.93
37173763--37173972	47	4.5	46	73	11	133	26	31	17	25	1.97
37173896--37174052	79	2.0	78	98	1	305	20	32	22	24	1.98
37173982--37174110	47	2.8	45	77	12	127	20	31	20	27	1.98
37181870--37182053	40	4.6	39	75	6	138	26	23	27	22	2.00
37181910--37182098	80	2.4	81	77	4	186	23	24	29	22	1.99
37189154--37189337	40	4.6	39	75	6	138	26	23	27	22	2.00
37189194--37189382	80	2.4	81	77	4	186	23	24	29	22	1.99
37201594--37201648	28	2.0	28	92	0	92	29	14	30	25	1.95
37224569--37225015	46	9.7	46	92	0	662	37	15	24	21	1.93
37225094--37225143	26	1.9	26	84	8	66	44	2	18	36	1.61
37239814--37240021	46	4.5	45	78	9	145	25	30	17	26	1.98
37239859--37240024	46	3.6	45	83	6	199	24	30	19	25	1.98
37251348--37251434	11	8.1	11	69	24	53	42	2	1	54	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37252449--37252473	10	2.5	10	100	0	50	28	0	8	64	1.22
37257789--37257846	28	2.1	28	100	0	116	46	17	5	31	1.70
37259533--37259572	21	1.9	21	85	10	55	37	0	10	52	1.35
37262608--37262658	20	2.8	17	77	19	50	43	3	3	49	1.39
37262687--37262761	26	3.0	24	68	24	57	44	1	6	48	1.37
37262636--37262769	58	2.2	61	82	8	152	41	2	6	49	1.41
37266326--37266504	50	3.7	48	83	8	204	25	20	29	24	1.99
37266326--37266504	99	1.8	96	87	3	268	25	20	29	24	1.99
37285052--37285110	9	6.1	9	74	14	55	35	8	20	35	1.83
37285050--37285120	20	3.5	20	92	0	115	35	9	21	33	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328