genome.fa.s7.2.7.7.80.10.50.1000.165.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  165  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48489162--48489221	21	2.9	20	78	11	68	23	21	35	20	1.96
48496069--48496102	16	2.1	16	88	5	50	8	0	14	76	1.01
48517521--48517738	40	5.5	40	91	2	316	24	28	23	22	1.99
48519405--48519576	93	1.8	93	94	0	308	27	29	21	21	1.99
48519398--48519579	46	3.9	46	81	9	235	28	29	20	21	1.98
48528474--48528691	40	5.5	40	87	2	289	26	28	22	22	1.99
48536548--48536582	18	1.9	18	100	0	70	22	37	11	28	1.89
48536499--48536631	67	2.0	67	98	0	257	27	32	9	30	1.88
48536314--48536564	49	5.2	49	96	0	443	28	30	8	32	1.87
48536450--48536680	116	2.0	116	99	0	453	28	31	9	31	1.88
48536566--48536687	49	2.5	49	98	0	235	30	29	8	31	1.86
48542458--48542637	48	3.8	48	80	4	211	25	20	30	23	1.98
48542456--48542634	96	1.9	96	88	4	272	25	20	30	23	1.98
48544478--48544562	27	3.1	27	86	5	102	17	23	22	36	1.95
48551787--48551954	40	4.2	40	79	3	160	23	26	23	27	2.00
48551803--48551952	80	1.9	80	83	8	198	22	26	24	27	1.99
48559953--48560162	40	5.2	40	90	3	248	27	20	25	26	1.99
48559971--48560185	80	2.7	79	83	7	231	28	20	24	25	1.99
48566092--48566309	40	5.5	40	90	2	298	26	28	22	22	1.99
48567564--48567601	6	6.5	6	81	6	51	0	18	0	81	0.69
48574125--48574342	40	5.5	40	86	2	262	26	27	22	23	2.00
48580565--48580591	13	2.1	13	100	0	54	22	14	14	48	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48586224--48586427	40	5.1	39	87	4	257	23	20	27	28	1.99
48593128--48593402	48	5.7	48	77	1	246	23	29	19	27	1.98
48593127--48593402	96	2.9	93	80	6	286	23	28	19	27	1.98
48593831--48594010	48	3.8	48	81	0	207	23	30	20	26	1.99
48593226--48594417	608	2.0	608	98	0	2285	31	22	13	32	1.93
48602569--48602693	63	2.0	63	91	0	205	30	21	13	34	1.92
48609737--48609912	46	3.8	46	81	10	214	21	20	28	29	1.98
48609734--48609904	93	1.8	93	93	0	297	21	21	28	28	1.98
48614387--48614681	47	6.3	47	95	0	491	28	29	9	32	1.88
48614415--48614584	22	7.3	22	62	18	67	27	29	11	31	1.91
48618315--48618660	40	8.7	40	89	1	536	24	29	22	23	1.99
48618319--48618660	80	4.3	80	96	1	600	24	29	22	23	1.99
48618714--48618788	38	2.0	38	86	5	107	24	26	18	30	1.98
48621209--48621501	47	6.3	47	92	1	464	28	28	9	33	1.88
48621211--48621488	92	3.0	93	91	2	450	28	28	10	33	1.89
48621209--48621501	139	2.1	140	92	1	489	28	28	9	33	1.88
48624338--48624404	15	4.5	15	82	0	80	10	17	13	58	1.63
48624329--48624404	30	2.5	30	81	8	91	10	17	15	56	1.66
48626798--48626968	93	1.8	93	93	0	297	21	21	28	28	1.98
48626802--48626976	46	3.8	46	81	13	205	21	20	28	29	1.98
48630558--48630631	27	2.7	27	80	0	67	31	24	10	33	1.90
48630572--48630674	54	1.9	54	83	0	134	31	23	7	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48630583--48630674	27	3.4	27	89	0	139	28	23	7	40	1.82
48630706--48630828	27	4.6	27	78	4	131	43	21	6	29	1.77
48630664--48630807	54	2.7	53	76	13	125	38	20	11	29	1.87
48630706--48630907	54	3.7	54	75	7	149	41	18	7	32	1.79
48630841--48630892	27	1.9	27	84	7	70	40	13	9	36	1.77
48630909--48631010	27	3.8	27	70	10	73	36	18	20	24	1.95
48631820--48631888	25	2.8	25	84	6	86	23	26	24	26	2.00
48632036--48632127	42	2.2	42	94	0	166	31	16	20	31	1.95
48632151--48632297	31	4.7	31	93	0	231	29	14	24	30	1.95
48635469--48635626	40	4.0	40	79	4	151	26	24	26	22	2.00
48635469--48635656	80	2.3	80	79	12	206	26	23	27	22	2.00
48643544--48643701	40	4.0	40	79	4	151	26	24	26	22	2.00
48643544--48643731	80	2.3	80	79	12	206	26	23	27	22	2.00
48648836--48648946	44	2.6	43	73	9	111	22	18	24	35	1.96
48655727--48655849	46	2.7	46	94	0	210	21	20	28	30	1.98
48657481--48657639	45	3.6	43	80	9	169	25	19	27	27	1.99
48658047--48658091	20	2.3	19	88	7	63	51	0	6	42	1.28
48658219--48658249	2	15.5	2	93	0	53	48	0	0	51	1.00
48659493--48659671	40	4.5	40	88	0	259	32	27	19	20	1.97
48660976--48661202	40	5.7	40	92	1	348	33	27	21	18	1.96
48663335--48663508	46	3.8	46	80	11	214	28	29	20	20	1.98
48663384--48663527	46	3.1	45	75	11	148	29	29	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48671640--48671865	40	5.7	40	93	0	355	33	28	20	18	1.96
48674947--48675011	32	2.0	32	100	0	130	18	18	24	38	1.93
48676986--48677029	22	2.0	22	100	0	88	27	13	13	45	1.81
48679551--48679603	28	1.9	27	84	3	70	26	26	18	28	1.98
48679565--48679699	60	2.2	59	83	8	157	25	25	20	27	1.99
48679692--48679737	20	2.3	20	85	3	67	28	26	17	28	1.98
48684949--48685024	27	2.9	26	80	9	84	38	17	11	32	1.86
48684949--48685024	24	2.9	26	77	13	84	38	17	11	32	1.86
48685012--48685309	27	11.0	27	84	0	364	34	19	21	24	1.96
48685514--48685683	25	6.8	25	88	0	250	27	24	21	27	1.99
48685514--48685683	75	2.3	75	96	0	313	27	24	21	27	1.99
48686594--48686765	45	3.9	44	86	5	215	25	20	28	25	1.99
48687643--48687696	20	2.6	21	82	11	67	35	0	7	57	1.27
48687686--48687724	11	3.5	11	89	0	60	25	2	0	71	0.98
48689867--48690006	46	3.0	46	89	2	192	38	13	24	23	1.91
48697300--48697455	43	3.6	43	79	3	179	32	23	15	28	1.95
48703659--48703689	13	2.4	13	100	0	62	9	32	45	12	1.75
48709835--48709879	13	3.5	13	78	6	56	80	2	0	17	0.82
48710747--48710910	71	2.3	71	97	0	310	34	18	28	18	1.95
48727268--48727337	28	2.5	28	88	9	99	31	27	14	27	1.95
48728554--48728615	30	2.1	30	87	6	90	24	24	14	37	1.93
48728823--48728940	23	5.1	23	90	8	177	27	22	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48728802--48728941	24	6.0	24	86	9	182	27	22	22	27	1.99
48728991--48729051	20	3.0	20	95	0	113	34	19	11	34	1.88
48728991--48729046	11	5.5	11	71	16	57	32	19	12	35	1.89
48729094--48729141	25	1.9	25	86	0	69	25	16	25	33	1.96
48730366--48730775	27	14.9	27	80	9	195	39	8	23	28	1.83
48730368--48730775	54	7.4	54	79	8	401	39	8	24	28	1.83
48730368--48730631	91	2.7	94	80	12	236	39	7	23	29	1.82
48730458--48730775	80	4.0	80	84	6	408	39	8	24	27	1.85
48730726--48730973	27	9.3	27	83	3	234	32	8	20	38	1.84
48730770--48730973	53	3.8	53	81	7	207	30	8	20	40	1.82
48733772--48733835	31	2.1	31	90	0	101	23	25	15	35	1.94
48734045--48734166	24	5.2	24	91	5	187	27	22	21	29	1.99
48734045--48734165	46	2.6	47	92	5	192	27	22	21	28	1.99
48734216--48734275	19	3.0	20	87	4	95	31	21	11	35	1.90
48734318--48734365	25	1.9	25	86	0	69	25	16	25	33	1.96
48735604--48736030	27	15.8	27	85	1	426	38	8	23	29	1.84
48735604--48736030	54	7.9	54	84	2	471	38	8	23	29	1.84
48735604--48736003	81	4.9	81	86	2	489	39	8	23	28	1.83
48736052--48736201	53	2.8	53	87	6	207	32	7	20	40	1.79
48735953--48736201	27	9.3	26	79	5	187	32	8	20	38	1.84
48736081--48736218	26	5.3	24	76	14	89	32	7	18	41	1.78
48746801--48746869	24	2.8	25	73	8	70	24	21	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48752819--48752911	24	3.9	24	100	0	186	37	25	16	20	1.93
48760025--48760141	24	4.9	24	100	0	234	37	25	16	20	1.93
48762994--48763020	14	1.9	14	100	0	54	3	0	59	37	1.15
48765731--48765831	42	2.4	43	77	1	105	32	23	18	24	1.97
48765731--48765839	43	2.5	44	75	8	109	33	22	18	24	1.96
48769424--48769598	40	4.4	40	98	0	323	29	29	20	21	1.98
48777922--48778056	40	3.4	40	92	0	216	31	28	17	22	1.97
48778522--48778611	45	2.0	45	100	0	180	40	15	0	44	1.47
48789360--48789397	19	2.0	19	90	10	60	28	5	10	55	1.56
48790521--48790560	14	2.8	14	88	3	53	65	12	2	20	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328