genome.fa.s7.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  212  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63577628--63577653	11	2.4	11	100	0	52	65	7	0	26	1.20
63580850--63580952	29	3.6	28	85	5	127	27	26	16	30	1.97
63583788--63583815	10	2.8	10	100	0	56	17	0	7	75	1.03
63585544--63585732	40	4.7	40	88	2	265	23	22	27	25	2.00
63585532--63585732	80	2.5	80	86	3	314	24	22	27	25	2.00
63588394--63588419	11	2.4	11	100	0	52	65	7	0	26	1.20
63589379--63589439	30	2.0	30	87	0	86	37	8	24	29	1.84
63591380--63591404	2	12.5	2	100	0	50	48	0	0	52	1.00
63596429--63596517	44	2.0	44	97	0	169	49	6	16	26	1.71
63597666--63597793	65	2.0	66	92	1	213	25	24	28	21	1.99
63597684--63597825	65	2.2	63	87	9	198	21	25	30	21	1.98
63597913--63597950	13	2.9	13	88	0	58	23	23	26	26	2.00
63609678--63609739	31	2.0	31	90	6	99	35	14	20	29	1.93
63619911--63620013	29	3.6	29	82	5	93	28	33	17	21	1.96
63627849--63627951	29	3.6	29	77	6	102	27	31	16	25	1.97
63629801--63629904	29	3.6	28	83	5	127	29	17	25	26	1.97
63637826--63637929	29	3.6	28	84	5	136	29	16	25	27	1.97
63642671--63642816	77	1.9	77	81	2	177	22	15	26	36	1.93
63645313--63645344	17	1.9	16	93	6	55	18	18	21	40	1.91
63645317--63645351	17	2.1	17	89	5	54	17	20	28	34	1.95
63644322--63646887	786	3.3	784	88	2	3781	34	13	19	32	1.91
63647153--63647196	18	2.4	18	100	0	88	13	31	31	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63649614--63649696	42	2.0	42	82	0	103	32	16	24	26	1.96
63654088--63654139	27	2.0	26	84	3	68	17	26	21	34	1.95
63661451--63661501	27	1.9	26	84	4	66	19	29	15	35	1.93
63665806--63665883	18	4.3	18	74	6	68	46	11	17	24	1.82
63668426--63668487	31	2.0	31	90	6	99	29	19	14	37	1.91
63674566--63674748	27	6.9	27	87	2	262	25	14	18	42	1.88
63678816--63678917	28	3.5	29	81	6	109	28	27	14	29	1.95
63681331--63683633	778	2.9	778	85	3	3054	33	13	19	33	1.90
63689622--63689656	16	2.2	16	89	0	52	57	5	11	25	1.56
63691771--63691984	40	5.3	40	79	6	200	27	20	26	25	1.99
63700008--63700271	80	3.3	80	90	2	388	26	22	26	24	2.00
63700008--63700270	40	6.6	40	84	0	310	26	22	26	24	2.00
63706194--63706254	30	2.0	30	83	0	77	29	24	6	39	1.80
63717526--63717586	30	2.0	30	83	0	77	29	24	6	39	1.80
63721256--63721356	28	3.5	28	86	6	114	29	13	26	29	1.94
63727507--63727575	28	2.4	29	88	7	97	33	13	23	30	1.92
63734928--63734959	12	2.7	12	90	0	55	15	0	9	75	1.05
63737797--63737978	78	2.3	80	83	8	221	25	20	26	26	1.99
63737798--63737980	40	4.6	39	79	10	185	25	20	27	26	1.99
63742953--63743142	29	6.6	29	85	1	220	24	16	32	25	1.96
63749644--63749703	30	2.0	30	87	6	86	18	31	26	23	1.97
63752215--63752281	26	2.5	26	80	2	71	43	25	7	23	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63752283--63752463	27	6.7	27	88	0	254	29	22	8	39	1.83
63752283--63752463	81	2.2	81	90	1	283	29	22	8	39	1.83
63752388--63752607	27	8.2	27	82	3	167	38	23	6	31	1.81
63752305--63752492	54	3.5	53	86	2	232	32	21	6	38	1.80
63752307--63752490	81	2.3	80	85	5	237	32	21	7	38	1.81
63752334--63752588	81	3.1	81	80	5	241	35	22	7	34	1.81
63752595--63752868	27	10.1	27	87	0	359	35	18	21	24	1.96
63753335--63753417	31	2.7	30	90	3	123	30	16	26	26	1.97
63755629--63755814	40	4.7	40	86	7	195	26	20	26	25	1.99
63755629--63755814	80	2.3	81	81	10	222	26	20	26	25	1.99
63755665--63755833	80	2.1	81	79	10	188	27	20	26	26	1.99
63755920--63756178	128	2.0	128	100	0	518	25	13	24	35	1.93
63759836--63759936	28	3.5	28	83	6	105	29	25	13	30	1.94
63767760--63767860	28	3.5	28	86	6	114	29	26	13	29	1.94
63771327--63771427	28	3.5	28	86	6	114	29	26	13	29	1.94
63775235--63775269	18	1.9	18	100	0	70	28	11	17	42	1.83
63785256--63785390	40	3.3	41	84	7	143	21	14	29	34	1.93
63785274--63785390	40	2.9	40	85	8	148	23	15	29	31	1.95
63791743--63791873	27	4.9	27	82	0	163	38	18	9	33	1.82
63791743--63791873	54	2.4	54	87	0	181	38	18	9	33	1.82
63792241--63792300	22	2.7	22	78	0	66	21	25	20	33	1.97
63794765--63794899	41	3.3	41	80	11	116	24	15	27	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63798082--63798269	39	4.8	39	89	0	232	24	30	21	23	1.99
63798118--63798270	39	3.9	39	93	0	252	24	31	20	24	1.98
63798087--63798269	78	2.3	79	89	1	269	23	30	21	24	1.99
63806076--63806264	40	4.8	39	89	1	234	24	31	21	22	1.98
63806081--63806264	79	2.3	79	89	2	271	23	30	22	23	1.99
63806112--63806265	40	3.9	39	93	2	254	24	31	20	23	1.98
63808613--63808660	25	1.9	25	86	0	69	33	25	16	25	1.96
63808699--63808755	9	5.9	9	73	15	51	35	8	21	35	1.84
63808697--63808759	20	3.2	20	97	0	117	36	12	19	31	1.89
63808813--63808907	23	4.0	24	81	12	115	28	20	22	29	1.98
63809099--63809162	31	2.1	31	90	0	101	35	15	23	25	1.94
63816067--63816114	25	1.9	25	86	0	69	33	25	16	25	1.96
63816153--63816209	9	5.9	9	73	15	51	35	8	21	35	1.84
63816151--63816213	20	3.2	20	97	0	117	36	12	19	31	1.89
63816267--63816341	23	3.1	25	86	7	111	34	17	20	28	1.95
63816278--63816361	24	3.5	24	81	12	93	28	21	21	28	1.99
63816553--63816616	31	2.1	31	87	0	92	35	14	23	26	1.93
63821217--63821317	28	3.5	28	86	6	114	28	13	27	29	1.95
63821246--63821317	29	2.5	28	91	6	110	29	13	27	29	1.95
63828771--63828871	28	3.5	28	86	6	114	28	13	27	29	1.95
63828800--63828871	29	2.5	28	91	6	110	29	13	27	29	1.95
63832412--63832851	218	2.0	218	99	0	871	33	12	18	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63835172--63835243	3	23.7	3	77	8	74	61	4	2	31	1.29
63836027--63836053	7	3.9	7	100	0	54	74	0	0	25	0.83
63837999--63838171	46	3.7	46	77	13	192	22	21	26	29	1.99
63837996--63838166	93	1.8	93	93	0	297	22	21	27	28	1.99
63841780--63841949	79	2.1	80	87	1	243	25	27	22	24	2.00
63841780--63841928	40	3.8	40	91	1	228	26	26	22	24	2.00
63841780--63841949	40	4.3	40	88	1	225	25	27	22	24	2.00
63844496--63844792	88	3.4	88	91	1	454	28	17	23	29	1.97
63844379--63844808	44	9.7	44	67	8	217	27	19	21	31	1.97
63844741--63845061	143	2.2	143	85	3	448	29	23	18	28	1.97
63844754--63845108	143	2.5	143	84	2	392	30	23	18	28	1.97
63845027--63845154	44	2.9	44	83	0	157	30	23	14	31	1.95
63845504--63845592	46	1.9	46	88	0	133	25	24	17	31	1.97
63846497--63846530	18	1.9	18	88	5	52	0	20	0	79	0.73
63847058--63847101	22	2.0	22	86	4	61	9	0	6	84	0.79
63847066--63847109	16	2.8	16	90	10	65	9	0	4	86	0.70
63847067--63847114	14	3.5	13	83	10	53	8	0	4	87	0.66
63847058--63847113	20	2.8	20	80	20	71	7	0	7	85	0.73
63853781--63853988	40	5.2	40	84	0	218	25	22	25	25	2.00
63853782--63853988	80	2.6	80	83	4	247	25	22	26	25	2.00
63861792--63861997	40	5.2	40	77	5	166	25	22	26	25	2.00
63863355--63863451	27	3.6	27	92	1	167	29	12	26	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63863355--63863463	54	2.0	55	89	5	168	30	13	24	31	1.94
63871329--63871425	27	3.6	27	95	1	176	28	13	26	30	1.94
63871329--63871437	54	2.0	55	91	5	177	29	14	24	31	1.95
63873668--63873721	3	17.7	3	92	3	81	62	0	3	33	1.12
63873691--63873732	19	2.2	19	91	8	68	61	0	0	38	0.96
63877288--63877315	14	2.0	14	100	0	56	64	0	7	28	1.20
63888854--63888893	2	20.0	2	100	0	80	50	0	0	50	1.00
63891313--63891618	39	8.0	39	93	3	505	21	25	29	23	1.99
63891313--63891618	77	4.0	78	91	3	505	21	25	29	23	1.99
63891313--63891626	114	2.7	116	92	2	528	22	24	28	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328