genome.fa.s7.2.7.7.80.10.50.1000.189.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  189  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56373767--56375417	143	11.8	141	75	8	1328	39	14	9	37	1.78
56374299--56375141	141	6.1	131	74	14	563	39	14	9	36	1.78
56373767--56375411	415	3.9	413	79	9	1537	39	14	9	37	1.78
56373767--56375417	284	5.9	281	77	7	1360	39	14	9	37	1.78
56375035--56375279	131	1.9	132	84	2	332	37	14	8	39	1.76
56373880--56375456	699	2.3	695	81	5	1738	39	14	9	36	1.79
56380706--56380730	5	5.0	5	100	0	50	40	0	0	60	0.97
56391062--56391105	20	2.2	20	100	0	88	50	18	15	15	1.79
56392303--56394425	143	15.1	141	77	8	1685	39	15	9	36	1.79
56394990--56395035	24	1.9	25	86	8	69	36	10	8	43	1.71
56396873--56397004	63	2.1	63	87	4	187	21	25	28	24	1.99
56400021--56400949	141	6.6	138	74	8	662	39	14	10	36	1.80
56400231--56400949	142	5.1	138	78	8	614	37	14	10	37	1.81
56400026--56400949	284	3.3	279	80	7	1001	39	14	10	36	1.80
56400786--56401145	196	1.8	196	89	0	558	36	15	11	35	1.85
56400968--56402039	143	7.5	139	75	9	892	38	14	8	38	1.77
56400981--56402039	281	3.7	280	79	8	1023	38	14	8	38	1.77
56406847--56407286	142	3.1	140	79	5	472	36	15	11	37	1.83
56407199--56407371	86	2.0	86	85	2	231	36	17	9	35	1.83
56407076--56407504	229	1.9	229	89	0	671	36	17	10	36	1.84
56407305--56407939	143	4.5	139	81	5	693	38	15	8	37	1.79
56406915--56407655	370	2.0	369	81	4	879	37	15	10	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56407852--56408010	86	1.8	86	83	0	210	40	16	8	33	1.80
56407577--56408273	369	1.9	368	81	3	853	38	15	9	36	1.81
56406876--56408582	653	2.6	650	85	3	2273	37	15	10	36	1.81
56407938--56408976	143	7.3	143	79	4	942	37	14	9	37	1.80
56407938--56408975	284	3.7	283	79	5	1027	37	14	9	37	1.80
56409721--56410447	143	5.1	141	79	5	735	39	15	9	35	1.79
56409721--56410447	289	2.5	284	82	5	861	39	15	9	35	1.79
56410791--56410850	32	1.9	32	86	6	88	13	35	26	25	1.93
56412034--56412058	2	12.5	2	100	0	50	48	0	0	52	1.00
56413111--56413180	31	2.3	31	82	0	86	28	25	20	25	1.99
56413135--56413226	46	2.0	46	86	0	130	27	22	22	27	1.99
56413181--56413239	31	1.9	31	96	0	109	25	23	20	30	1.98
56413219--56413394	50	3.5	50	92	1	282	26	22	16	34	1.95
56415585--56415618	8	4.1	8	96	3	59	61	23	0	14	1.33
56421314--56421446	59	2.2	60	90	1	205	35	14	24	25	1.93
56421344--56421446	29	3.5	29	96	2	188	36	14	24	24	1.93
56428865--56428939	29	2.6	29	97	0	141	37	14	25	22	1.92
56431168--56431229	31	2.1	29	87	6	88	40	29	11	19	1.86
56431323--56431357	14	2.6	14	90	4	54	51	5	14	28	1.65
56431336--56431706	73	5.0	74	78	5	344	33	18	16	30	1.94
56431413--56432027	317	1.9	312	81	11	737	33	18	17	31	1.94
56431741--56432031	74	3.9	73	79	14	321	33	19	17	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56432050--56432248	68	2.7	72	84	12	257	38	19	14	27	1.91
56432131--56432367	120	2.0	118	94	3	413	37	19	13	29	1.90
56432199--56432298	52	2.0	50	88	9	150	42	16	10	32	1.81
56432250--56432503	69	3.7	68	88	8	379	35	21	14	28	1.93
56432383--56432606	113	1.9	117	91	7	375	33	21	16	28	1.95
56432609--56432751	71	2.0	72	91	2	236	38	23	16	21	1.93
56432649--56432872	119	1.8	121	86	9	330	36	22	15	26	1.93
56432050--56433477	257	5.4	271	87	10	1752	36	21	14	26	1.93
56432885--56433049	72	2.3	71	88	3	251	41	21	15	22	1.90
56432925--56433427	121	4.0	121	77	13	525	37	22	14	25	1.92
56433049--56433312	70	3.7	71	84	4	356	37	22	14	25	1.92
56433049--56433312	71	3.7	69	84	4	339	37	22	14	25	1.92
56438501--56438536	12	3.0	12	95	0	63	41	2	25	30	1.69
56441151--56441189	9	4.3	9	84	9	53	0	7	2	89	0.56
56441151--56441189	10	4.0	10	87	12	55	0	7	2	89	0.56
56441151--56441189	19	2.1	19	90	9	62	0	7	2	89	0.56
56444915--56445027	43	2.6	43	88	0	145	25	14	28	31	1.94
56445285--56446265	491	2.0	491	86	3	1393	36	11	16	34	1.85
56446655--56446698	2	22.0	2	100	0	88	50	0	0	50	1.00
56446149--56447228	576	1.9	573	82	4	1363	39	10	14	36	1.80
56450056--56450141	44	2.0	43	95	2	154	44	10	15	30	1.80
56456915--56457142	114	2.0	114	96	0	420	30	10	18	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56469201--56469241	21	2.0	20	90	4	64	41	24	0	34	1.55
56482135--56482179	3	15.7	3	86	9	67	31	2	0	66	1.04
56484392--56484450	31	1.9	31	96	0	109	37	1	16	44	1.59
56487268--56487345	33	2.4	32	82	6	93	32	16	23	28	1.96
56491551--56491595	20	2.4	19	82	13	58	22	6	6	64	1.41
56495918--56495974	30	1.9	30	85	0	78	43	7	22	26	1.78
56496195--56496241	19	2.3	20	82	10	60	36	0	14	48	1.44
56496591--56496983	101	3.9	97	77	6	340	26	16	25	31	1.97
56496848--56496929	26	3.2	26	65	25	66	26	12	26	34	1.92
56496596--56496984	50	7.7	50	77	5	363	26	16	25	31	1.96
56496589--56496983	151	2.6	151	91	1	639	26	16	26	31	1.97
56505410--56505560	40	3.8	40	77	10	157	25	23	27	22	2.00
56505409--56505576	80	2.1	80	82	6	207	25	23	27	23	2.00
56515644--56515681	15	2.5	15	91	8	60	15	18	15	50	1.79
56517981--56518039	30	2.0	30	86	0	82	38	8	27	25	1.84
56518596--56518909	50	6.3	50	72	12	230	26	17	25	30	1.97
56518597--56518777	100	1.8	100	85	2	256	27	18	23	30	1.98
56520406--56520430	13	1.9	13	100	0	50	32	4	16	48	1.64
56523769--56523812	12	3.7	12	84	0	52	72	6	4	15	1.22
56527017--56527198	39	4.7	39	90	2	294	27	20	29	23	1.99
56527017--56527198	77	2.3	78	91	2	294	27	20	29	23	1.99
56534308--56534490	39	4.7	39	91	0	303	26	20	29	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56535333--56535602	46	5.8	48	81	12	271	22	30	19	27	1.98
56535331--56535606	94	3.0	92	81	9	321	22	30	19	27	1.98
56540847--56540900	6	8.7	6	80	13	56	74	0	5	20	1.02
56540827--56540881	18	2.9	18	82	15	67	74	0	5	20	1.01
56540847--56540895	24	2.0	24	84	7	64	75	0	6	18	1.00
56543197--56543255	21	2.8	22	85	7	70	23	0	6	69	1.12
56543226--56543285	26	2.4	24	83	8	75	28	0	3	68	1.05
56555576--56555632	30	1.9	30	92	0	96	17	28	31	22	1.97
56556616--56556666	25	2.0	25	96	0	93	31	19	11	37	1.88
56559802--56559860	13	4.5	13	72	16	50	35	10	10	44	1.72
56562028--56562088	27	2.3	27	100	0	122	21	32	26	19	1.97
56563301--56563377	26	3.0	26	73	19	72	37	24	20	16	1.93
56571401--56571521	46	2.6	46	80	7	129	23	28	19	29	1.98
56586234--56586348	46	2.5	44	84	6	133	24	31	19	25	1.98
56586272--56586397	46	2.7	46	82	4	146	24	31	19	24	1.98
56588196--56588406	40	5.3	40	85	3	225	26	21	25	26	2.00
56588196--56588406	79	2.7	79	82	7	232	26	21	25	26	2.00
56596318--56596508	40	4.8	40	86	3	213	27	21	26	24	1.99
56596328--56596529	80	2.5	80	80	3	235	25	21	26	26	1.99
56600617--56600679	32	2.0	31	84	3	81	39	12	23	23	1.89
56604049--56606322	143	16.0	142	82	4	2544	36	10	15	37	1.81
56604048--56606322	428	5.3	428	84	3	2714	36	10	15	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56606364--56606635	142	1.9	144	79	4	309	36	9	12	41	1.76
56607203--56607959	142	5.4	141	79	8	733	35	8	16	38	1.80
56607291--56607699	131	3.0	131	80	10	374	36	8	16	38	1.79
56613617--56613702	29	3.0	29	88	3	86	25	22	15	37	1.93
56613630--56613702	29	2.5	29	97	0	137	23	24	15	36	1.93
56621117--56621232	29	4.0	29	90	4	110	25	22	14	37	1.92
56621130--56621232	29	3.5	29	96	2	188	24	24	14	36	1.93
56621129--56621262	59	2.2	60	89	1	207	25	25	14	35	1.93
56622351--56622614	71	3.7	69	83	6	332	25	14	22	37	1.92
56622493--56622738	122	2.0	123	91	2	397	24	13	22	39	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328