Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  140  of  328  ( 39316 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40813318--40813359
13
2.9
14
80
13
50
54
0
0
45
0.99
40813322--40813358
16
2.3
16
86
13
58
59
0
0
40
0.97
40815727--40815766
20
2.1
19
85
4
53
30
17
5
47
1.69
40817044--40817163
63
1.9
63
87
3
179
22
16
28
32
1.96
40818269--40818319
22
2.4
21
80
3
57
43
9
9
37
1.71
40820324--40820499
46
3.8
46
79
12
216
20
21
29
28
1.98
40820321--40820492
93
1.8
93
96
0
317
20
21
29
27
1.98
40827839--40828014
46
3.8
46
79
12
216
20
21
29
28
1.98
40827836--40828007
93
1.8
93
96
0
317
20
21
29
27
1.98
40834749--40834924
46
3.8
46
79
12
216
20
21
29
28
1.98
40834746--40834917
93
1.8
93
96
0
317
20
21
29
27
1.98
40842280--40842455
46
3.8
46
78
12
207
21
21
29
28
1.98
40842277--40842448
93
1.8
93
96
0
317
21
21
29
27
1.99
40845538--40845582
23
2.0
23
90
0
72
48
8
2
40
1.47
40850329--40850367
2
19.5
2
100
0
78
48
0
0
51
1.00
40850502--40850583
25
3.3
25
82
3
103
23
19
19
37
1.94
40858859--40858940
39
2.1
39
90
0
128
20
24
31
23
1.98
40862877--40863088
52
4.2
49
76
12
182
25
16
28
30
1.97
40862996--40863086
46
2.0
46
86
0
128
23
16
29
30
1.96
40865674--40865893
25
8.9
25
70
14
136
40
19
13
27
1.89
40865667--40865901
50
4.8
49
76
10
194
39
19
12
28
1.88
40868241--40868308
29
2.3
29
76
14
77
29
7
0
63
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40868232--40868300
23
3.1
23
74
18
65
28
8
0
62
1.25
40868438--40868601
3
54.3
3
79
8
163
29
4
1
64
1.20
40870749--40870791
19
2.2
20
88
8
63
23
23
11
41
1.87
40872465--40872616
40
3.8
40
78
6
139
23
25
23
27
2.00
40877418--40877453
18
1.9
19
94
5
65
77
5
0
16
0.94
40878811--40879080
44
6.1
44
70
8
145
30
16
25
27
1.97
40878998--40879195
44
4.5
43
75
10
125
31
15
28
24
1.96
40879167--40879284
44
2.7
44
78
0
110
28
23
22
25
1.99
40879210--40879692
44
10.8
45
68
13
142
30
19
21
28
1.98
40879479--40879648
44
3.8
45
77
6
170
29
19
22
28
1.98
40879480--40879639
88
1.8
88
85
6
227
29
20
21
28
1.98
40880105--40880142
15
2.6
15
88
12
53
18
5
0
76
0.97
40880696--40880782
15
6.0
14
78
12
70
26
8
1
64
1.28
40880668--40880782
29
3.9
28
75
19
92
26
7
2
63
1.35
40880729--40880774
15
2.9
15
93
6
74
26
8
0
65
1.21
40880668--40880797
44
2.8
44
78
17
133
27
7
2
62
1.35
40880911--40881070
3
53.7
3
80
10
161
31
3
1
63
1.20
40882485--40882519
18
1.9
18
88
0
52
0
11
2
85
0.69
40883994--40884018
12
2.1
12
100
0
50
76
0
0
24
0.80
40884017--40884053
7
5.3
7
93
0
65
43
0
2
54
1.14
40887281--40887408
63
2.0
64
86
6
179
41
8
13
36
1.75
40887759--40887805
21
2.2
21
77
7
51
57
12
17
12
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40889281--40889320
2
20.0
2
100
0
80
50
0
0
50
1.00
40893941--40893980
16
2.4
17
95
4
73
80
5
0
15
0.88
40894090--40894136
12
4.2
12
76
15
55
0
29
0
70
0.88
40894089--40894178
21
4.3
21
88
1
137
2
31
0
66
1.04
40894306--40894355
19
2.5
20
81
15
68
14
14
8
64
1.50
40895242--40895309
20
3.5
20
69
15
54
36
10
1
51
1.45
40895343--40895403
29
2.2
28
85
8
81
34
3
0
62
1.12
40896332--40896383
27
1.9
27
88
0
77
38
9
23
28
1.86
40897132--40897197
30
2.2
29
84
7
89
46
27
3
22
1.66
40899423--40899531
54
2.0
54
98
0
209
36
2
20
40
1.67
40899439--40899529
27
3.4
26
69
13
76
39
3
17
39
1.66
40900106--40900162
30
2.0
30
80
12
68
36
8
19
35
1.83
40901239--40901282
19
2.4
19
85
7
56
50
0
9
40
1.34
40903072--40903140
28
2.5
28
92
2
113
42
27
10
20
1.84
40904627--40904761
48
2.8
49
85
4
161
28
21
24
25
1.99
40904627--40904777
48
3.2
48
83
3
155
30
20
24
24
1.99
40904812--40904937
49
2.6
49
88
6
184
28
23
26
21
1.99
40914580--40914638
15
4.0
15
80
4
66
42
0
23
33
1.55
40932913--40932970
19
3.1
19
83
11
59
31
0
6
62
1.22
40932928--40932971
20
2.3
19
80
11
54
27
0
4
68
1.09
40932927--40932977
20
2.6
19
76
11
50
29
0
5
64
1.17
40937053--40937098
18
2.5
18
86
10
58
41
13
8
36
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40943042--40943095
27
2.0
27
100
0
108
37
18
14
29
1.91
40944097--40944146
18
2.7
18
81
6
55
60
6
0
34
1.21
40944576--40944606
16
1.9
16
93
0
53
70
0
0
29
0.87
40944819--40944859
21
2.0
21
95
0
73
24
12
29
34
1.91
40946100--40946125
10
2.6
10
100
0
52
30
0
0
69
0.89
40946473--40946506
11
3.1
11
86
0
50
0
35
0
64
0.94
40954583--40954637
23
2.5
22
78
16
60
38
5
0
56
1.23
40955137--40955164
6
4.7
6
100
0
56
35
35
28
0
1.58
40960588--40960629
3
14.0
3
94
0
75
2
33
0
64
1.07
40961892--40961917
10
2.6
10
100
0
52
92
0
0
7
0.39
40971902--40971935
16
2.1
17
88
5
52
52
0
5
41
1.25
40972892--40973029
40
3.5
40
71
14
117
27
16
23
31
1.96
40976724--40976890
35
4.6
35
84
8
192
31
10
23
33
1.89
40976735--40976850
40
3.0
40
84
10
129
31
10
25
33
1.89
40976724--40976894
75
2.4
74
83
7
208
32
11
23
33
1.90
40979236--40979322
43
2.0
43
93
0
147
24
22
2
50
1.61
40982418--40982472
12
4.6
12
81
0
56
14
38
0
47
1.45
40982453--40982480
3
9.3
3
100
0
56
0
32
0
67
0.91
40989602--40989640
20
2.0
19
90
5
60
66
5
0
28
1.12
40994095--40994131
19
1.9
19
88
0
56
51
0
0
48
1.00
40997529--40997601
7
10.4
7
82
5
76
43
1
26
28
1.63
40997529--40997601
21
3.5
21
77
7
85
43
1
26
28
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40998042--40998228
65
2.9
65
84
2
243
37
2
6
52
1.41
40998190--40998228
19
2.0
20
85
9
55
43
2
5
48
1.38
40999020--40999293
136
2.0
137
98
0
532
31
24
18
24
1.98
40999550--40999605
26
2.2
26
83
3
69
30
14
19
35
1.91
41001050--41001185
26
5.2
26
93
0
227
37
24
5
33
1.77
41003371--41003676
160
1.9
160
87
4
447
28
15
9
47
1.76
41006535--41007019
94
5.2
94
75
4
371
29
19
16
33
1.94
41006937--41007138
93
2.2
94
86
4
284
30
23
15
29
1.96
41006948--41007108
44
3.5
44
71
17
123
31
23
16
28
1.96
41010682--41010754
38
1.9
38
83
5
94
28
28
21
20
1.98
41010719--41010815
41
2.5
38
75
6
97
28
29
19
21
1.98
41011839--41011872
17
2.1
17
88
5
52
2
26
0
70
1.01
41015759--41015835
24
3.2
24
80
7
68
12
41
7
37
1.73
41018277--41018310
17
1.9
18
88
5
52
41
0
8
50
1.34
41018681--41018745
21
3.1
21
79
0
67
16
24
20
38
1.93
41022783--41022831
8
6.1
8
78
7
55
55
0
2
42
1.11
41030652--41030704
20
2.7
20
84
0
70
20
35
30
13
1.91
41032507--41032551
17
2.6
17
85
0
54
51
0
0
48
1.00
41032511--41032564
28
2.0
28
85
3
74
51
1
0
46
1.11
41034598--41034637
21
2.0
20
85
5
53
45
2
5
47
1.38
41037086--41037156
36
2.0
36
97
0
133
38
23
8
29
1.85
41045435--41045460
13
2.0
13
100
0
52
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41047916--41047952
2
18.5
2
100
0
74
51
0
0
48
1.00
41049257--41049291
6
5.8
6
93
0
61
14
37
0
48
1.44
41049444--41049498
26
2.1
26
83
6
67
40
3
1
54
1.28
41049464--41049549
41
2.0
43
82
6
104
45
0
3
51
1.18
41054616--41054670
3
18.7
3
86
3
76
65
0
34
0
0.93
41056443--41056507
34
1.9
34
90
3
105
41
16
18
23
1.90
41056680--41056704
13
1.9
13
100
0
50
68
0
0
32
0.90
41057752--41057844
30
3.2
30
63
22
72
32
8
9
49
1.66
41057740--41057853
57
2.0
57
96
3
212
35
7
10
46
1.67
41061249--41061276
7
4.0
7
100
0
56
42
0
28
28
1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328