genome.fa.s7.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  159  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46524814--46524875	31	2.1	29	81	6	70	33	12	19	33	1.90
46528140--46529192	48	22.0	48	92	0	1736	35	6	26	31	1.81
46530463--46530653	40	4.8	40	96	1	330	25	20	28	25	1.99
46530463--46530653	79	2.4	80	94	0	330	25	20	28	25	1.99
46534118--46535163	48	21.8	48	92	0	1732	35	6	26	30	1.82
46535197--46535293	37	2.6	37	98	0	185	24	16	32	25	1.96
46540424--46540645	40	5.6	40	83	3	277	23	26	24	25	2.00
46540387--46540645	79	3.3	80	82	5	294	23	25	24	25	2.00
46540387--46540645	119	2.2	119	82	8	305	23	25	24	25	2.00
46547701--46547928	39	5.7	40	81	5	248	24	26	24	25	2.00
46547671--46547928	79	3.3	79	81	6	274	24	25	24	25	2.00
46554665--46554691	10	2.7	10	100	0	54	33	29	7	29	1.85
46555172--46555223	27	2.0	26	84	3	68	17	28	21	32	1.96
46556794--46556971	40	4.5	40	80	4	175	23	25	22	28	1.99
46564835--46565003	40	4.2	40	80	4	173	23	26	21	28	1.99
46573665--46573716	27	2.0	26	84	3	68	17	26	21	34	1.95
46577939--46577974	12	3.0	12	95	0	63	27	25	5	41	1.77
46583158--46583611	70	6.7	69	76	13	426	24	14	22	37	1.92
46583158--46583421	71	3.7	69	83	6	332	25	14	22	37	1.92
46583300--46583546	122	2.0	124	90	3	392	24	13	22	39	1.90
46583248--46583734	193	2.5	191	85	4	658	26	15	22	35	1.94
46582991--46583611	263	2.4	257	94	3	1068	25	14	23	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46583312--46583908	317	1.8	323	85	7	836	25	16	21	36	1.94
46583515--46583821	123	2.5	123	96	2	562	26	17	21	34	1.95
46583892--46583926	14	2.5	14	90	0	52	17	20	5	57	1.60
46583906--46584072	74	2.2	74	85	4	228	27	19	20	32	1.97
46583757--46584398	165	3.9	164	89	4	882	28	18	20	33	1.96
46584087--46584619	77	6.9	76	70	15	288	30	17	19	32	1.95
46584163--46584329	91	1.9	91	86	7	243	31	17	19	31	1.95
46584255--46584762	72	6.5	73	75	12	399	29	16	19	34	1.94
46584254--46584972	88	9.0	76	72	14	420	28	16	19	35	1.93
46584613--46584648	14	2.7	13	86	4	54	30	13	5	50	1.65
46584744--46584805	30	2.1	30	90	6	99	19	9	29	41	1.83
46584394--46584973	255	2.3	249	85	6	757	27	16	18	36	1.93
46585617--46585653	16	2.3	16	90	9	58	89	2	8	0	0.58
46585601--46585721	45	2.7	44	74	14	124	76	14	4	4	1.08
46585649--46585681	15	2.3	15	90	10	52	66	27	0	6	1.15
46585660--46585725	28	2.4	27	74	2	69	75	15	3	6	1.11
46589490--46589623	40	3.4	39	81	3	153	26	26	21	25	2.00
46597708--46597964	40	6.4	40	87	2	320	26	26	21	25	1.99
46599949--46600101	43	3.6	43	76	11	170	24	18	26	30	1.98
46605284--46605454	40	4.2	40	82	5	184	24	25	22	26	2.00
46607552--46607692	39	3.7	38	92	1	219	22	30	20	26	1.98
46609384--46609419	2	18.0	2	94	0	63	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46610407--46610465	28	2.1	28	93	0	100	25	16	32	25	1.97
46615939--46616238	49	6.1	49	96	0	546	33	9	27	30	1.87
46616307--46616393	37	2.3	36	92	5	138	20	18	33	27	1.96
46618209--46618520	40	7.8	40	94	0	516	25	20	27	25	1.99
46623632--46623683	24	2.2	24	96	0	95	7	32	11	48	1.68
46628829--46628876	24	2.0	24	88	8	71	43	0	8	47	1.33
46629233--46629257	6	4.2	6	100	0	50	32	0	0	68	0.90
46631572--46631838	46	5.8	46	81	2	277	28	20	19	31	1.97
46631572--46631814	91	2.6	93	82	5	262	26	20	20	32	1.97
46633234--46633553	48	6.7	48	84	0	399	24	18	30	26	1.98
46635560--46635597	20	1.9	20	88	0	58	15	42	26	15	1.87
46635968--46636013	23	2.0	23	84	12	60	45	10	6	36	1.65
46635975--46636019	23	2.0	23	82	8	56	40	13	8	37	1.76
46645352--46645391	21	1.9	21	89	0	62	35	20	12	32	1.90
46645990--46646139	43	3.5	43	82	3	167	32	26	14	26	1.95
46646384--46646424	18	2.2	19	86	4	57	70	4	0	24	1.06
46649762--46649794	17	1.9	17	100	0	66	48	12	9	30	1.71
46651284--46651310	14	1.9	14	100	0	54	33	29	22	14	1.94
46653106--46653132	10	2.7	10	100	0	54	22	0	55	22	1.44
46653506--46653538	3	10.7	3	93	6	57	33	0	0	66	0.92
46654153--46654281	7	18.1	7	69	10	66	37	37	0	24	1.56
46654190--46654281	28	3.3	28	74	19	86	36	38	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46654570--46654736	41	4.1	41	88	3	230	17	22	23	35	1.95
46664307--46664333	9	3.0	9	100	0	54	33	22	11	33	1.89
46673134--46673170	2	18.5	2	100	0	74	51	0	0	48	1.00
46681443--46681705	131	2.0	131	100	0	526	30	12	22	34	1.91
46684332--46684576	40	6.2	39	91	3	325	26	28	21	23	1.99
46686875--46686982	43	2.5	44	89	3	141	30	26	12	29	1.93
46688184--46688210	14	1.9	14	100	0	54	44	22	0	33	1.53
46698439--46698465	14	1.9	14	100	0	54	44	22	0	33	1.53
46700361--46700427	32	2.1	33	85	2	91	20	29	28	20	1.98
46700588--46700621	12	2.8	12	90	0	50	26	47	17	8	1.77
46706421--46706480	31	2.0	30	84	9	79	28	11	11	48	1.75
46710907--46711061	42	3.7	41	84	3	184	29	24	16	29	1.96
46714030--46714188	24	6.6	24	95	0	264	20	18	25	35	1.95
46714030--46714210	48	3.8	48	91	1	256	22	18	24	34	1.96
46714030--46714210	72	2.5	72	87	3	222	22	18	24	34	1.96
46721316--46721351	15	2.5	14	90	4	54	91	2	5	0	0.49
46721319--46721351	11	2.9	11	95	4	57	90	3	6	0	0.52
46721345--46721379	13	2.5	15	90	9	56	68	25	0	5	1.11
46721343--46721381	13	2.5	17	76	23	50	71	23	0	5	1.05
46723940--46723975	12	3.0	12	95	0	63	27	25	5	41	1.77
46729156--46729611	70	6.7	68	75	12	388	25	14	22	37	1.92
46729298--46729537	121	2.0	124	90	4	380	24	13	22	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46728989--46729611	262	2.4	257	94	3	1052	26	14	22	36	1.93
46729418--46729611	72	2.7	71	84	5	239	25	14	22	37	1.92
46729246--46729736	198	2.5	192	84	4	619	26	14	22	35	1.93
46729516--46729823	125	2.5	126	96	0	555	26	17	22	34	1.96
46729767--46729999	90	2.6	90	85	4	305	26	18	22	33	1.97
46729917--46730075	73	2.1	75	86	5	216	28	18	21	30	1.97
46730096--46730240	74	1.9	76	88	5	224	30	18	22	28	1.97
46729849--46730416	165	3.4	165	90	3	806	29	18	20	31	1.96
46730273--46730779	72	6.5	73	74	13	397	29	16	19	34	1.94
46730631--46730666	14	2.7	13	86	4	54	30	13	5	50	1.65
46730575--46730736	88	1.8	88	85	2	227	26	17	19	36	1.94
46730761--46730822	30	2.1	30	90	6	99	19	9	29	41	1.83
46730412--46730990	254	2.3	249	85	6	746	27	16	18	36	1.93
46731637--46731671	16	2.2	16	90	5	54	88	2	8	0	0.61
46731662--46731702	14	2.5	17	81	18	52	70	21	2	4	1.18
46731667--46731701	16	2.3	16	90	9	56	68	25	0	5	1.11
46747845--46747877	2	16.5	2	100	0	66	0	0	48	51	1.00
46749716--46749849	19	7.2	19	84	8	186	35	16	8	38	1.80
46749716--46749849	55	2.4	54	85	7	171	35	16	8	38	1.80
46749716--46749846	36	3.5	36	89	4	190	35	16	9	38	1.80
46750631--46750768	41	3.3	41	67	18	122	26	22	21	29	1.99
46750615--46751278	84	8.0	84	90	3	1056	25	22	21	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46750963--46751269	43	7.3	42	61	16	116	26	21	20	30	1.98
46752229--46752286	8	7.5	8	81	14	68	1	15	0	82	0.74
46752229--46752286	16	3.8	15	84	13	82	1	15	0	82	0.74
46752231--46752286	23	2.4	23	88	8	87	1	16	0	82	0.76
46752229--46752301	30	2.5	28	84	8	92	1	17	0	80	0.78
46752229--46752302	16	4.5	15	75	20	67	1	17	0	81	0.77
46758089--46758257	92	1.8	92	94	2	304	21	21	29	27	1.98
46758092--46758262	45	3.7	46	79	14	210	21	21	28	28	1.98
46765864--46766065	40	5.1	40	95	2	338	22	23	28	25	1.99
46773882--46774085	40	5.1	40	92	1	320	23	22	27	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328