genome.fa.s7.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  174  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51435732--51435770	16	2.4	16	86	0	51	43	28	5	23	1.75
51435937--51436022	30	2.9	30	94	0	145	18	5	48	26	1.70
51436638--51437224	87	6.6	89	78	9	457	36	19	16	28	1.93
51436738--51437244	91	5.6	92	80	10	421	36	18	16	28	1.92
51437048--51437080	14	2.4	14	94	0	57	63	6	12	18	1.48
51437151--51437540	73	5.3	73	83	8	488	34	20	16	28	1.94
51437173--51437540	146	2.5	146	94	0	628	33	20	16	29	1.94
51437629--51438005	77	5.0	76	83	6	430	32	20	16	29	1.95
51437629--51437999	146	2.5	149	85	3	471	32	20	16	29	1.95
51438003--51438032	14	2.1	15	93	6	53	76	6	0	16	0.99
51437782--51438419	332	1.9	334	88	3	955	35	20	16	28	1.94
51438111--51438351	73	3.3	72	89	2	347	34	20	17	27	1.96
51438111--51438374	145	1.8	145	81	4	327	35	20	17	26	1.95
51438267--51438436	91	1.9	89	90	6	270	34	20	17	27	1.95
51445558--51445634	24	3.3	23	77	15	77	57	6	6	29	1.49
51445639--51445692	21	2.4	21	84	9	63	55	0	5	38	1.23
51445722--51445767	25	1.9	25	86	8	69	60	0	4	34	1.16
51448370--51448536	40	4.2	40	79	6	169	26	22	26	24	2.00
51456371--51456537	40	4.2	40	79	6	169	26	22	26	24	2.00
51462998--51463067	27	2.5	28	95	2	124	28	14	27	30	1.95
51462998--51463079	27	3.0	27	85	8	96	29	14	24	31	1.95
51466158--51466279	43	2.9	42	79	7	156	30	14	24	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51469572--51469722	43	3.5	43	81	5	164	29	15	22	33	1.94
51470750--51470788	19	2.1	19	85	0	51	71	7	5	15	1.26
51471252--51471341	28	3.2	27	84	7	110	33	24	22	20	1.97
51471226--51471341	27	4.2	28	81	5	112	36	22	22	18	1.95
51471217--51471341	56	2.2	56	80	9	139	35	22	23	19	1.96
51471451--51471511	28	2.2	28	93	0	104	31	8	26	34	1.86
51473504--51473640	46	3.0	46	84	0	175	35	8	30	26	1.85
51474977--51475062	30	2.9	30	87	0	118	20	4	46	27	1.71
51482301--51482416	22	5.0	23	79	12	114	22	20	19	37	1.95
51482326--51482410	45	1.9	44	90	2	134	22	22	20	35	1.96
51484780--51484813	17	2.0	17	88	11	52	41	5	29	23	1.78
51487662--51487743	39	2.1	39	100	0	164	32	14	25	26	1.95
51489564--51489747	40	4.6	40	78	4	147	22	24	29	23	1.99
51493960--51493991	12	2.7	12	100	0	64	12	46	0	40	1.42
51494844--51495085	50	4.8	50	83	3	297	25	18	26	29	1.98
51494848--51495032	101	1.8	101	89	0	289	24	18	26	30	1.98
51496661--51496813	40	3.9	39	86	2	191	24	31	20	22	1.98
51504558--51504712	40	3.9	40	82	4	179	25	30	20	23	1.98
51506303--51506334	16	2.0	16	93	0	55	46	0	18	34	1.49
51509068--51509207	23	6.0	23	77	9	124	23	20	19	36	1.95
51509068--51509207	45	3.0	46	73	13	135	23	20	19	36	1.95
51509068--51509207	68	2.0	71	83	8	180	23	20	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51510676--51510720	18	2.5	18	85	7	65	13	40	2	44	1.56
51510757--51510808	26	2.0	27	88	3	79	23	44	15	17	1.86
51512093--51512259	46	3.6	45	73	10	158	28	29	20	21	1.98
51512092--51512307	93	2.3	93	91	0	351	28	29	19	22	1.98
51512139--51512310	47	3.7	46	72	17	174	28	29	19	23	1.98
51521240--51521473	101	2.3	103	77	4	233	32	18	8	40	1.82
51521816--51521861	18	2.6	18	80	13	60	36	0	0	63	0.95
51522157--51522181	13	1.9	13	100	0	50	68	0	32	0	0.90
51522354--51522472	60	2.0	60	91	0	193	33	0	12	53	1.39
51524556--51524618	33	1.9	33	83	6	83	15	49	9	25	1.75
51524808--51524951	76	1.9	78	85	5	204	25	4	11	57	1.54
51525696--51525728	16	2.1	16	100	0	66	36	12	33	18	1.88
51527602--51527685	27	3.1	27	82	0	87	27	27	22	22	1.99
51532266--51532304	21	1.9	21	89	5	62	58	0	0	41	0.98
51532265--51532310	20	2.3	20	81	7	58	63	0	0	36	0.95
51532428--51532459	15	2.1	15	100	0	64	6	12	25	56	1.59
51536008--51536248	41	5.9	41	93	1	396	29	24	26	19	1.99
51536810--51536858	24	2.0	24	100	0	98	53	0	4	42	1.20
51537302--51537364	8	8.4	8	70	19	55	65	1	0	33	1.03
51537307--51537364	22	2.7	22	81	13	59	67	1	0	31	1.01
51537337--51537385	15	3.3	15	91	5	82	77	0	0	22	0.77
51537328--51537391	22	3.0	22	90	2	94	78	0	0	21	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51537337--51537383	14	3.3	14	90	3	67	78	0	0	21	0.75
51537344--51537391	7	6.7	7	90	4	78	83	0	0	16	0.65
51539399--51539444	21	2.2	21	84	0	56	45	2	21	30	1.64
51542011--51542159	43	3.5	43	85	3	194	23	18	29	28	1.98
51546007--51546040	2	17.0	2	100	0	68	50	0	0	50	1.00
51548655--51548819	40	4.2	40	78	3	181	26	21	26	26	1.99
51549999--51550249	27	9.4	27	84	1	218	39	20	8	31	1.82
51550016--51550248	81	2.9	80	82	6	256	39	21	8	30	1.82
51550016--51550194	54	3.3	54	88	2	245	40	20	7	31	1.80
51550016--51550429	54	7.7	54	83	5	146	34	21	9	35	1.85
51550244--51550616	27	13.8	27	87	3	493	27	22	9	40	1.84
51550244--51550660	81	5.1	81	82	5	286	28	22	9	39	1.85
51551855--51551902	25	1.9	25	86	0	69	33	25	16	25	1.96
51551946--51552004	20	3.0	20	92	0	100	35	11	20	32	1.89
51552055--51552196	24	6.0	24	91	3	207	28	22	21	26	1.99
51552055--51552196	47	3.0	47	90	4	205	28	22	21	26	1.99
51552055--51552197	71	2.0	71	89	2	216	29	22	21	26	1.99
51552388--51552482	31	3.1	31	98	0	181	38	15	22	23	1.92
51558405--51558459	9	5.4	10	79	14	51	56	20	1	21	1.51
51558424--51558459	9	3.9	9	85	7	54	58	19	0	22	1.40
51558526--51558580	16	3.6	16	69	14	53	54	9	9	27	1.62
51558531--51558592	29	2.1	29	100	0	124	51	9	9	29	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51570126--51570304	52	3.5	50	82	4	207	27	27	15	29	1.96
51572646--51572853	40	5.2	39	82	3	202	25	25	23	25	2.00
51572646--51572852	80	2.6	80	82	3	238	25	26	23	25	2.00
51580696--51580903	40	5.2	39	82	3	202	25	25	23	25	2.00
51580696--51580902	80	2.6	80	82	3	238	25	26	23	25	2.00
51585822--51585895	29	2.6	29	89	4	105	25	16	32	25	1.96
51589705--51589778	29	2.6	29	89	4	105	25	16	32	25	1.96
51595524--51595593	27	2.6	27	95	2	122	30	27	14	28	1.95
51601966--51602169	40	5.2	39	81	9	211	26	27	20	25	1.99
51604131--51604204	29	2.6	29	89	4	105	25	16	32	25	1.96
51606712--51606740	2	14.5	2	100	0	58	48	0	0	51	1.00
51610676--51610766	45	2.0	45	89	0	137	26	13	25	35	1.92
51611123--51611150	2	14.0	2	100	0	56	50	0	0	50	1.00
51621320--51621424	51	2.1	51	96	0	192	24	36	24	14	1.93
51630666--51630713	22	2.2	22	96	0	87	14	33	31	20	1.93
51638344--51638388	20	2.2	20	88	0	63	48	2	11	37	1.51
51652975--51653012	20	1.9	20	88	0	58	52	10	2	34	1.50
51660466--51660675	40	5.2	40	87	2	305	25	24	28	21	1.99
51668602--51668771	40	4.2	40	84	3	225	25	24	28	21	1.99
51670696--51670761	28	2.4	28	90	7	100	22	7	25	43	1.79
51670709--51670762	28	1.9	28	100	0	108	20	7	24	48	1.75
51671692--51671729	20	1.9	20	88	0	58	52	10	2	34	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51675592--51675621	10	2.9	10	95	5	51	46	10	10	33	1.71
51677253--51677370	41	3.1	41	60	28	98	32	17	28	21	1.96
51677221--51677384	71	2.3	71	100	0	328	35	17	28	18	1.94
51684833--51684950	41	3.1	41	60	28	98	32	17	28	21	1.96
51684801--51684964	71	2.3	71	100	0	328	35	17	28	18	1.94
51699871--51700043	46	3.7	46	75	13	192	22	20	27	29	1.99
51699868--51700038	93	1.8	93	93	0	297	22	21	28	28	1.99
51705510--51705555	24	1.9	24	82	8	58	10	23	15	50	1.75
51708512--51708564	27	2.0	27	92	0	88	37	22	15	24	1.92
51709695--51709742	25	1.9	25	83	8	62	25	4	25	45	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328