genome.fa.s7.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  136  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39554053--39554172	23	5.0	24	87	5	156	30	20	21	27	1.98
39554054--39554172	46	2.5	48	87	8	172	29	21	21	27	1.98
39554365--39554428	31	2.1	31	90	0	101	35	15	23	25	1.94
39557216--39557315	27	3.7	28	80	9	109	39	21	10	30	1.86
39557216--39557334	54	2.2	54	80	5	134	38	21	10	29	1.86
39557311--39557600	27	10.8	27	83	3	291	28	24	7	40	1.81
39557326--39557537	80	2.7	80	88	5	304	27	25	7	40	1.81
39557327--39557504	53	3.3	54	82	4	200	27	26	6	39	1.80
39557593--39557717	27	4.7	27	84	2	171	42	18	8	31	1.79
39557468--39557627	81	2.0	81	82	2	196	29	20	8	41	1.82
39557593--39557717	53	2.3	54	86	1	180	42	18	8	31	1.79
39557756--39557807	27	1.9	27	88	7	79	40	11	11	36	1.78
39557861--39557925	27	2.4	27	84	5	87	35	20	24	20	1.96
39559083--39559132	25	2.0	25	92	0	82	36	24	14	26	1.93
39559171--39559227	9	5.9	9	73	15	51	35	8	21	35	1.84
39559169--39559231	20	3.2	20	95	0	117	36	12	19	31	1.89
39559287--39559382	23	4.1	23	93	2	165	29	20	20	29	1.98
39559285--39559404	23	5.0	24	87	5	156	30	20	21	27	1.98
39559286--39559404	46	2.5	48	87	8	172	29	21	21	27	1.98
39559597--39559660	31	2.1	31	90	0	101	35	15	23	25	1.94
39570601--39570707	27	4.0	27	85	6	137	35	21	24	18	1.96
39570601--39570707	54	2.0	53	90	1	169	35	21	24	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39572141--39572193	24	2.2	24	89	0	79	20	39	3	35	1.71
39573098--39573155	30	1.9	31	86	10	84	43	5	24	27	1.75
39579416--39579567	39	3.9	39	92	0	250	23	21	31	23	1.98
39579417--39579598	39	4.6	39	88	2	240	24	21	30	23	1.99
39583671--39584092	210	2.0	208	97	0	799	36	9	22	31	1.85
39584109--39584168	30	2.0	30	90	0	93	38	8	25	28	1.84
39588212--39588283	27	2.6	28	88	2	83	38	26	5	29	1.79
39588220--39588283	28	2.3	27	94	2	110	37	28	6	28	1.81
39588386--39588500	27	4.3	26	90	5	149	17	21	23	37	1.94
39607254--39607428	46	3.8	46	76	17	148	24	30	19	25	1.98
39614853--39615069	46	4.7	45	77	10	188	22	29	19	28	1.98
39616909--39617131	111	2.0	111	95	0	401	36	24	11	26	1.90
39618871--39618962	25	3.7	25	78	5	87	25	21	17	35	1.95
39619568--39619609	20	2.2	20	87	12	61	64	0	19	16	1.30
39621122--39621234	43	2.7	42	76	6	120	27	17	23	30	1.97
39624107--39624276	40	4.2	40	85	3	225	21	28	24	25	1.99
39632201--39632422	40	5.2	40	78	14	221	22	28	23	25	1.99
39632284--39632383	52	1.9	52	100	0	200	25	28	21	26	1.99
39636831--39637165	27	12.6	27	86	5	441	28	23	9	39	1.85
39638528--39638584	9	5.9	9	73	15	51	35	8	21	35	1.84
39638526--39638588	20	3.2	20	95	0	117	36	12	19	31	1.89
39638642--39638830	24	8.0	23	90	5	274	29	23	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39639021--39639084	31	2.1	31	90	0	101	35	15	23	25	1.94
39641906--39642243	27	12.6	27	85	4	434	28	23	9	39	1.85
39641970--39642283	81	3.9	81	82	5	215	28	23	9	38	1.85
39643533--39643580	25	1.9	25	86	0	69	37	25	12	25	1.91
39643619--39643675	9	5.9	9	73	15	51	35	8	21	35	1.84
39643617--39643679	20	3.2	20	95	0	117	36	12	19	31	1.89
39643729--39643902	24	7.2	24	92	3	271	29	23	21	25	1.99
39643729--39643902	71	2.4	72	91	3	271	29	23	21	25	1.99
39644096--39644159	31	2.1	31	87	0	92	37	15	21	25	1.93
39646322--39646460	74	1.9	74	83	0	179	26	28	18	26	1.98
39646322--39646432	37	3.0	37	94	0	186	27	28	18	24	1.98
39646340--39646460	37	3.3	37	90	0	152	24	28	19	26	1.99
39646625--39646758	46	2.9	46	87	0	187	25	31	8	34	1.87
39646735--39646977	47	5.1	47	88	4	324	26	30	11	31	1.91
39653027--39653072	22	2.1	22	84	8	58	39	4	0	56	1.19
39657543--39657781	49	4.8	49	80	6	259	26	16	25	31	1.96
39657539--39657780	100	2.4	101	85	4	278	26	16	25	31	1.97
39663041--39663185	43	3.4	42	76	9	141	28	15	24	31	1.95
39674247--39674326	31	2.5	31	87	2	106	25	26	16	32	1.96
39674520--39674637	23	5.0	24	91	5	179	28	22	21	27	1.99
39674687--39674727	20	2.0	20	95	0	73	34	21	9	34	1.87
39674770--39674817	25	1.9	25	86	0	69	25	14	22	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39675980--39676052	27	2.7	27	79	12	78	20	19	21	38	1.94
39676093--39676375	27	10.4	27	79	3	147	34	9	19	36	1.84
39676179--39676321	54	2.6	54	84	6	191	31	9	21	37	1.85
39676070--39676321	81	3.1	79	72	12	206	32	9	20	37	1.85
39676273--39676422	81	1.9	81	82	2	194	40	9	19	30	1.83
39676299--39676483	27	6.9	27	88	4	212	39	7	24	28	1.81
39676300--39676483	81	2.3	81	86	3	246	39	7	25	28	1.82
39676489--39676578	27	3.3	27	85	3	119	32	11	16	40	1.84
39676472--39676578	54	2.0	54	81	7	128	30	11	19	38	1.87
39676489--39676593	27	3.9	27	78	9	90	34	10	16	39	1.83
39680884--39680908	13	1.9	13	100	0	50	20	32	32	16	1.94
39685077--39685115	20	2.1	19	85	9	53	2	28	17	51	1.59
39691711--39691780	28	2.5	28	84	9	90	27	14	25	32	1.94
39693995--39694202	40	5.2	39	83	1	200	25	25	21	26	2.00
39693995--39694201	80	2.6	80	83	4	238	25	26	21	26	2.00
39702036--39702241	40	5.2	38	82	2	180	25	25	21	27	2.00
39711445--39711494	25	2.0	25	81	11	59	12	32	0	56	1.36
39718502--39718537	18	2.0	18	89	10	56	33	19	8	38	1.82
39721058--39721213	68	2.2	68	77	13	149	20	28	16	34	1.94
39728553--39728708	68	2.2	68	77	13	149	20	28	16	34	1.94
39734074--39734228	40	3.9	40	84	6	190	38	15	29	17	1.90
39734082--39734226	20	7.3	20	62	16	59	36	16	30	16	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39735385--39735415	16	2.0	16	93	6	55	51	19	0	29	1.47
39737242--39737460	40	5.5	39	81	5	199	23	26	23	26	2.00
39737269--39737461	80	2.4	81	83	1	244	24	26	22	26	2.00
39744506--39744728	40	5.6	40	77	10	136	25	26	21	26	2.00
39744540--39744692	80	1.9	81	83	1	200	24	26	21	26	1.99
39747727--39747785	27	2.2	26	79	5	73	37	20	22	20	1.95
39747911--39748144	27	8.7	27	80	5	217	24	20	19	35	1.96
39747921--39748144	54	4.1	54	84	1	261	24	20	19	36	1.95
39747911--39748144	81	2.9	81	85	1	281	24	20	19	35	1.96
39752008--39752063	29	1.9	29	85	0	76	41	23	19	16	1.90
39759821--39759931	40	2.8	39	82	9	127	24	28	23	23	1.99
39759821--39759970	80	1.9	80	83	2	194	23	28	23	25	2.00
39766986--39767084	28	3.5	28	80	4	101	28	14	28	29	1.95
39774629--39774696	28	2.4	28	87	4	93	29	14	25	30	1.95
39779245--39779375	42	3.2	41	87	12	198	22	23	29	24	1.99
39782375--39782504	40	3.2	40	79	4	154	21	27	25	25	1.99
39790430--39790559	40	3.2	40	79	4	154	21	27	25	25	1.99
39798700--39798742	22	2.0	22	90	9	70	37	25	0	37	1.56
39803268--39803352	30	2.8	30	78	3	82	29	16	17	36	1.92
39806221--39806275	22	2.5	22	72	0	56	52	1	5	40	1.35
39815172--39815217	20	2.3	21	82	14	62	26	17	28	28	1.98
39816526--39816585	8	7.5	8	85	7	68	65	3	1	30	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39816825--39816878	25	2.2	24	86	3	72	61	0	3	35	1.14
39817443--39817557	30	3.8	30	91	0	185	22	3	48	25	1.66
39817443--39817557	60	1.9	60	98	0	221	22	3	48	25	1.66
39818342--39818370	14	2.1	14	100	0	58	65	6	13	13	1.45
39818126--39818444	89	3.6	89	81	4	358	36	19	17	26	1.94
39818500--39818533	13	2.5	14	95	4	61	58	5	17	17	1.57
39818425--39818770	88	3.8	89	86	5	473	34	20	17	27	1.95
39818592--39818622	16	1.9	16	93	0	53	64	6	12	16	1.47
39818680--39818714	14	2.5	14	95	0	61	60	5	17	17	1.55
39818121--39819175	344	3.2	337	83	9	1207	34	20	17	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328