genome.fa.s7.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  113  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32007635--32007741	28	3.8	28	87	0	133	28	24	12	34	1.91
32007635--32007741	56	1.9	56	86	0	151	28	24	12	34	1.91
32012232--32012448	46	4.7	47	78	11	207	26	19	29	24	1.98
32013355--32013399	21	2.1	21	84	8	56	15	31	28	24	1.96
32016418--32016449	2	16.0	2	93	0	55	46	0	3	50	1.17
32017813--32017849	2	19.0	2	88	5	58	48	0	2	48	1.15
32025420--32025582	70	2.3	71	98	1	319	19	28	17	34	1.94
32025420--32025616	70	2.8	70	90	4	249	20	28	17	33	1.95
32032939--32033125	71	2.7	68	93	5	281	18	28	18	34	1.95
32032962--32033125	71	2.3	71	100	0	328	18	28	17	35	1.94
32032962--32033159	71	2.8	70	91	3	258	20	28	17	33	1.95
32047641--32047813	46	3.7	46	76	14	185	21	20	27	30	1.98
32047638--32047808	93	1.8	93	92	2	290	21	20	28	29	1.98
32065468--32065520	20	2.6	21	77	17	58	52	3	20	22	1.62
32070717--32070770	27	2.0	27	96	0	99	48	7	5	38	1.55
32079134--32079254	59	2.1	59	98	0	233	39	6	22	31	1.80
32081729--32081786	24	2.4	24	88	2	80	27	24	15	32	1.95
32081844--32081900	9	5.9	9	73	15	51	35	21	8	35	1.84
32081832--32081902	20	3.5	20	94	0	124	32	21	11	35	1.89
32081837--32081891	11	5.4	11	70	16	55	30	20	12	36	1.90
32081939--32081986	25	1.9	25	86	0	69	25	16	25	33	1.96
32085454--32085719	46	6.0	45	85	8	339	21	23	15	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32085632--32085707	38	2.0	38	100	0	152	21	26	18	34	1.96
32087856--32087907	11	4.7	11	76	9	52	63	3	0	32	1.12
32093272--32093366	24	4.0	24	83	6	122	28	23	18	29	1.98
32093293--32093365	23	3.1	23	92	2	110	30	21	17	30	1.97
32093424--32093480	9	5.9	9	73	15	51	35	21	8	35	1.84
32093412--32093482	20	3.5	20	94	0	124	32	21	11	35	1.89
32093417--32093471	11	5.4	11	70	16	55	30	20	12	36	1.90
32093519--32093566	25	1.9	25	86	0	69	25	16	25	33	1.96
32096506--32096562	30	1.9	30	88	0	87	28	29	24	17	1.97
32097141--32097183	20	2.2	20	100	0	86	39	18	18	23	1.92
32103580--32103743	40	4.1	40	81	3	195	24	21	28	25	1.99
32116053--32116094	2	21.0	2	100	0	84	50	0	0	50	1.00
32116483--32116523	20	2.0	20	90	0	64	39	12	19	29	1.88
32120769--32120886	41	3.1	41	60	28	98	32	17	28	21	1.96
32120737--32120900	71	2.3	71	100	0	328	35	17	28	18	1.94
32128291--32128452	69	2.3	71	97	2	310	35	17	27	19	1.94
32130698--32130848	40	3.8	40	77	13	134	27	23	26	22	2.00
32130734--32130864	40	3.3	40	79	2	156	25	23	27	23	2.00
32140921--32140993	35	2.1	35	100	0	146	31	19	16	32	1.94
32144650--32144731	41	2.0	41	97	0	155	34	18	24	23	1.96
32155646--32155678	14	2.2	16	89	10	52	54	6	6	33	1.50
32169210--32169393	40	4.7	40	82	8	191	26	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32177135--32177193	27	2.2	26	82	8	66	30	27	18	23	1.98
32177763--32177842	41	2.0	41	92	0	133	26	28	23	21	1.99
32178163--32178396	27	8.7	27	76	11	171	32	7	19	41	1.80
32178102--32178421	54	6.0	52	73	15	176	33	9	18	39	1.82
32178165--32178421	81	3.2	81	74	14	210	31	7	19	40	1.80
32178410--32178513	54	1.9	54	86	0	145	29	20	17	32	1.95
32178410--32178501	27	3.4	27	90	0	139	29	19	16	34	1.94
32186852--32186997	40	3.7	40	90	1	204	28	29	18	23	1.98
32199923--32200040	41	3.1	41	60	28	98	32	17	28	21	1.96
32199891--32200054	71	2.3	71	100	0	328	35	17	28	18	1.94
32205747--32205914	40	4.2	40	82	1	176	24	27	22	25	2.00
32208958--32209054	50	1.9	50	95	0	176	37	23	9	29	1.86
32210227--32210302	27	2.9	27	88	2	82	30	15	22	31	1.95
32210239--32210309	27	2.7	27	91	2	108	29	18	21	30	1.97
32210316--32210538	27	8.3	26	84	5	205	43	21	7	27	1.80
32210299--32210550	54	4.7	54	82	3	240	42	21	7	28	1.81
32210316--32210522	81	2.6	81	82	4	231	42	22	8	27	1.81
32210299--32210607	27	11.4	27	80	6	203	41	20	8	29	1.82
32210666--32210725	27	2.2	27	82	5	68	33	18	25	23	1.97
32211116--32211174	27	2.2	27	84	6	75	20	23	27	28	1.99
32211138--32211213	33	2.3	33	90	0	116	23	21	26	28	1.99
32211472--32211520	17	2.8	18	75	6	55	38	20	14	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32218136--32218172	9	4.0	9	89	3	56	54	21	0	24	1.45
32218136--32218172	19	2.0	19	89	5	58	54	21	0	24	1.45
32218234--32218361	54	2.4	54	94	1	222	42	14	10	33	1.79
32218297--32218335	19	2.1	19	100	0	78	48	10	10	30	1.70
32222591--32222943	112	3.0	118	75	10	391	32	16	18	33	1.93
32222553--32222900	112	3.0	112	75	10	405	33	16	18	32	1.93
32224728--32224778	21	2.4	21	96	0	93	41	3	17	37	1.68
32238689--32238718	15	2.0	15	100	0	60	46	6	0	46	1.29
32240589--32241436	422	2.0	422	97	0	1615	37	17	17	28	1.92
32252051--32252094	18	2.4	18	100	0	88	13	29	13	43	1.83
32254707--32254917	64	3.2	64	62	20	151	30	26	17	26	1.97
32254673--32254959	137	2.1	137	97	0	538	32	25	18	24	1.97
32255535--32255570	8	4.5	8	92	0	54	5	22	22	50	1.70
32256744--32256878	26	5.2	26	91	1	218	36	24	5	33	1.80
32256744--32256878	51	2.6	51	95	1	234	36	24	5	33	1.80
32262896--32262979	42	2.0	42	97	0	159	38	25	7	29	1.82
32263959--32264001	19	2.2	20	84	12	54	34	11	20	32	1.89
32263936--32263994	31	1.9	30	93	3	100	35	10	18	35	1.85
32264458--32264505	21	2.3	21	92	0	78	25	41	20	12	1.87
32279330--32279362	17	1.9	18	88	11	52	45	0	12	42	1.41
32281502--32281545	17	2.5	17	81	3	61	13	6	4	75	1.17
32285009--32285176	75	2.2	75	84	2	221	39	27	10	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32285009--32285173	25	6.6	25	66	10	86	40	26	10	23	1.86
32298668--32298715	17	2.7	18	80	3	53	14	8	4	72	1.23
32304674--32304941	136	2.0	135	98	0	518	41	13	13	32	1.82
32306090--32306130	22	1.9	21	90	5	64	21	7	56	14	1.63
32308554--32308701	41	3.6	41	80	7	176	23	22	27	26	1.99
32314775--32314849	36	2.1	36	94	0	132	22	16	18	42	1.88
32317623--32317668	19	2.4	19	89	7	67	2	26	0	71	0.97
32321081--32321155	36	2.1	36	94	0	132	44	17	16	22	1.87
32334288--32334516	34	6.9	34	70	4	153	39	14	15	30	1.87
32334290--32334516	67	3.4	67	83	3	287	39	14	15	30	1.87
32336367--32336419	3	17.3	3	92	3	88	32	1	1	64	1.15
32337832--32337872	20	2.0	20	85	9	55	48	2	0	48	1.14
32340610--32340653	21	2.1	21	95	0	79	27	4	20	47	1.69
32345217--32345253	17	2.2	17	100	0	74	54	5	16	24	1.63
32346828--32346890	30	2.1	30	100	0	126	46	15	3	34	1.62
32347522--32347560	21	1.9	19	90	10	60	51	2	0	46	1.14
32349040--32349064	2	12.5	2	100	0	50	48	0	0	52	1.00
32354287--32354381	47	2.0	47	100	0	190	33	10	14	41	1.81
32359987--32360028	17	2.5	17	80	0	57	52	0	2	45	1.13
32359979--32360031	27	2.0	27	85	3	72	50	0	1	47	1.12
32360248--32360281	16	2.1	16	94	0	59	35	0	2	61	1.11
32364845--32364969	40	3.1	40	87	2	171	32	20	21	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32365011--32365157	40	3.7	40	82	3	163	28	24	21	25	1.99
32365091--32365342	114	2.3	111	82	4	283	30	21	20	27	1.98
32365652--32365763	7	15.7	7	71	3	71	23	0	26	49	1.56
32365685--32365784	22	4.6	22	72	12	73	23	1	30	46	1.59
32365751--32365811	21	2.9	22	81	13	74	18	0	42	39	1.50
32365710--32365834	7	17.6	7	74	9	56	20	0	33	45	1.52
32366219--32366281	20	3.4	19	70	17	60	19	3	6	71	1.21
32366239--32366298	17	3.4	17	75	11	66	11	1	8	78	1.03
32366217--32366300	36	2.3	38	91	6	145	16	2	7	73	1.15
32366219--32366299	37	2.2	37	95	2	146	16	2	7	74	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328