genome.fa.s7.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  222  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66555849--66555997	80	1.9	79	83	6	194	22	26	23	27	1.99
66560642--66560681	19	2.1	19	100	0	80	32	27	15	25	1.95
66560645--66560678	10	3.5	10	84	8	52	32	20	17	29	1.96
66560665--66560730	29	2.3	29	86	0	87	30	31	15	22	1.95
66569806--66569952	27	5.5	26	81	3	132	22	17	21	38	1.93
66569811--66569952	54	2.7	52	82	8	160	22	18	20	38	1.93
66574124--66574153	15	1.9	16	93	6	53	10	10	0	80	0.92
66577506--66577709	40	5.1	40	93	2	313	21	25	28	24	1.99
66585416--66585633	40	5.5	40	89	2	289	22	24	27	24	2.00
66593351--66593558	44	4.6	46	73	10	130	24	30	19	26	1.98
66599114--66599167	27	2.0	27	100	0	108	18	18	11	51	1.74
66601424--66601725	41	7.3	41	87	3	401	35	24	20	19	1.96
66601424--66601725	123	2.4	125	89	3	450	35	24	20	19	1.96
66610642--66610701	26	2.3	26	83	11	70	56	3	5	35	1.37
66610740--66610796	3	19.0	3	100	0	114	66	0	0	33	0.92
66617941--66618021	28	2.9	28	75	1	81	27	17	33	22	1.96
66617953--66618020	28	2.4	28	82	2	82	26	17	35	20	1.95
66618126--66618227	27	3.8	27	76	5	100	36	21	12	29	1.91
66618181--66618266	27	3.2	27	80	8	95	36	18	19	25	1.95
66621280--66621382	29	3.6	29	92	2	154	26	32	15	26	1.96
66629329--66629402	29	2.6	29	86	4	96	27	32	14	25	1.95
66632052--66632138	37	2.3	36	92	5	138	26	32	19	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66632209--66632410	49	4.1	49	97	0	368	30	26	8	34	1.87
66635426--66635577	40	3.8	40	94	0	259	25	27	20	26	1.99
66637411--66637497	37	2.3	36	94	5	147	26	33	19	20	1.97
66637576--66637777	49	4.1	49	96	0	359	31	26	8	33	1.86
66641062--66641142	28	2.9	28	81	1	90	23	14	35	25	1.93
66641462--66641807	161	2.1	161	87	1	496	37	20	9	32	1.85
66641441--66641830	27	14.5	27	82	7	386	38	19	10	32	1.85
66641600--66641874	27	10.2	27	85	5	127	39	19	10	29	1.86
66647445--66647653	45	4.6	45	85	0	175	23	20	16	38	1.92
66647488--66647653	90	1.8	90	89	0	260	25	19	16	37	1.93
66660774--66660876	29	3.6	28	81	5	116	21	16	33	29	1.95
66668572--66668674	29	3.6	28	81	5	116	21	16	33	29	1.95
66673446--66673547	40	2.6	40	86	10	147	24	23	27	24	2.00
66678812--66678912	28	3.5	28	86	6	114	29	26	13	29	1.94
66678900--66679030	29	4.5	29	87	1	174	25	31	16	27	1.96
66686723--66686823	28	3.5	28	86	6	114	29	26	13	29	1.94
66686811--66686941	29	4.5	29	87	1	174	25	31	16	27	1.96
66689384--66689453	28	2.5	28	88	9	99	27	14	27	31	1.95
66691797--66691914	41	3.1	41	60	28	98	32	17	28	21	1.96
66691765--66691928	71	2.3	71	100	0	328	35	17	28	18	1.94
66694698--66694879	40	4.6	40	83	4	181	23	26	22	28	1.99
66702802--66702970	40	4.2	40	80	4	173	23	26	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66705544--66705669	39	3.2	39	90	0	189	22	19	29	28	1.98
66707522--66707588	24	2.8	24	73	8	64	28	32	4	34	1.77
66711315--66711345	15	2.1	15	100	0	62	35	0	25	38	1.56
66711560--66711705	40	3.7	39	86	7	195	23	23	27	25	2.00
66711553--66711706	80	1.9	80	91	0	254	24	22	27	25	2.00
66711934--66711970	2	18.5	2	100	0	74	51	0	0	48	1.00
66712115--66712146	2	16.0	2	100	0	64	50	0	0	50	1.00
66718594--66718761	40	4.2	40	93	1	275	26	26	22	24	2.00
66720862--66720905	23	2.0	22	86	4	61	54	20	0	25	1.45
66738998--66739031	13	2.6	13	95	0	59	32	20	0	47	1.51
66739393--66739426	13	2.6	13	100	0	68	35	47	17	0	1.48
66741266--66741366	24	4.2	24	79	3	96	25	21	17	34	1.96
66743518--66743542	2	12.5	2	100	0	50	48	0	0	52	1.00
66754019--66754189	27	6.3	27	85	0	198	37	18	18	25	1.93
66757581--66757724	39	3.7	39	92	0	243	26	20	29	22	1.99
66757582--66757738	78	2.0	79	93	1	271	24	20	29	24	1.99
66764791--66764963	27	6.4	27	79	1	186	35	17	20	26	1.95
66765717--66765776	27	2.3	26	79	2	66	25	20	18	36	1.94
66776233--66776378	43	3.4	43	78	6	138	30	23	16	29	1.96
66778896--66779007	27	4.1	27	82	10	131	36	23	24	16	1.94
66778896--66779007	54	2.1	54	86	3	154	36	23	24	16	1.94
66779420--66779453	16	2.1	16	88	0	50	11	26	14	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66785313--66785495	40	4.6	40	79	6	176	24	23	27	24	2.00
66785313--66785497	79	2.3	81	82	7	218	24	23	27	24	2.00
66785313--66785530	79	2.7	79	78	6	174	24	22	27	25	2.00
66787008--66787050	22	1.9	23	90	4	70	25	2	48	23	1.62
66794445--66794483	18	2.2	19	86	9	55	15	23	41	20	1.90
66799371--66799460	47	1.9	46	86	2	126	34	22	18	24	1.96
66803163--66803221	20	3.0	20	92	0	100	37	11	20	30	1.89
66803272--66803390	47	2.5	48	89	8	172	27	21	24	26	1.99
66803272--66803390	24	5.0	24	84	9	154	27	21	24	26	1.99
66803582--66803645	31	2.1	31	96	0	119	39	15	21	23	1.92
66803599--66803706	38	2.8	38	92	1	180	38	14	23	23	1.92
66806405--66806445	17	2.4	17	91	0	64	21	0	34	43	1.53
66811041--66811107	33	2.0	33	85	5	91	26	25	20	26	1.99
66813340--66813420	41	2.0	42	83	11	105	32	18	25	23	1.97
66815400--66815569	27	6.4	26	81	6	171	25	20	17	37	1.94
66815399--66815569	53	3.2	53	81	5	193	25	19	17	36	1.94
66815389--66815569	80	2.3	80	81	3	231	25	19	18	35	1.95
66824132--66824178	23	2.0	23	100	0	94	40	12	21	25	1.89
66826923--66826959	18	2.1	19	85	10	51	10	29	43	16	1.82
66837936--66838066	38	3.2	38	71	17	127	32	23	15	29	1.95
66837981--66838114	48	2.8	48	87	1	171	32	23	14	29	1.94
66841802--66841850	25	2.0	25	87	0	71	32	24	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66841892--66841950	20	3.0	20	92	0	100	37	11	20	30	1.89
66842000--66842118	24	5.0	23	84	8	143	28	21	24	26	1.99
66842000--66842117	47	2.5	47	89	6	168	27	21	24	26	1.99
66842000--66842117	23	5.0	24	84	7	152	27	21	24	26	1.99
66842309--66842372	31	2.1	31	96	0	119	39	15	21	23	1.92
66842326--66842418	38	2.5	36	92	3	159	41	11	21	24	1.87
66842933--66843095	38	4.2	39	80	6	179	25	23	23	26	2.00
66846027--66846252	24	9.6	24	94	3	345	35	25	18	20	1.95
66846027--66846252	70	3.2	70	92	3	357	35	25	18	20	1.95
66846027--66846252	117	1.9	116	89	3	346	35	25	18	20	1.95
66853781--66854010	24	9.6	24	95	0	363	35	25	18	21	1.95
66857473--66857578	27	3.9	28	87	2	137	34	18	25	20	1.96
66857473--66857576	55	1.9	54	86	5	147	34	19	25	21	1.96
66871596--66871626	15	2.1	15	100	0	62	32	0	6	61	1.21
66871887--66872043	43	3.7	42	72	13	133	26	18	24	31	1.98
66874480--66874551	34	2.1	34	84	5	92	25	22	20	31	1.98
66882471--66882629	43	3.7	43	74	4	133	27	18	22	30	1.98
66886261--66886348	43	2.0	43	97	0	167	37	21	2	38	1.66
66886265--66886373	43	2.6	43	86	7	134	40	21	1	36	1.64
66887639--66887730	23	4.0	23	73	7	78	36	15	23	23	1.93
66893285--66893435	40	3.8	40	86	6	216	21	24	31	22	1.99
66893274--66893427	80	1.9	80	94	0	272	22	22	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66901153--66901183	2	15.5	2	100	0	62	48	0	0	51	1.00
66906154--66906281	42	3.0	42	71	7	116	30	25	18	25	1.98
66916975--66917159	40	4.6	40	85	0	253	23	25	24	25	2.00
66928607--66928744	74	1.9	74	98	0	267	26	21	7	44	1.78
66930151--66930188	20	1.9	20	88	0	58	34	2	10	52	1.50
66931817--66931913	28	3.5	28	95	4	171	45	26	9	18	1.80
66938187--66938224	20	1.9	20	88	0	58	34	2	10	52	1.50
66939855--66939916	18	3.4	18	72	14	65	48	22	9	19	1.78
66941525--66941607	28	2.9	28	80	7	96	27	15	26	30	1.96
66941529--66941632	28	3.7	28	78	7	95	27	15	28	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328