genome.fa.s7.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  161  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47094173--47094300	48	2.7	46	80	8	150	46	32	1	19	1.60
47094847--47094894	19	2.5	20	93	6	82	68	4	4	22	1.24
47094881--47094914	6	5.3	6	89	10	50	76	0	0	23	0.79
47094888--47094912	13	1.9	13	100	0	50	80	0	0	20	0.72
47094888--47094929	15	3.0	14	86	6	50	71	0	4	23	1.05
47095136--47095184	6	8.2	6	90	0	62	2	55	0	42	1.11
47097581--47097624	13	3.4	13	83	0	61	52	0	0	47	1.00
47097642--47097666	13	1.9	13	100	0	50	48	4	0	48	1.20
47100425--47100472	20	2.4	20	82	6	62	20	2	8	68	1.26
47100616--47100841	43	5.3	43	92	1	364	25	18	28	27	1.98
47101719--47101896	92	2.0	90	87	2	257	38	12	7	42	1.70
47109051--47109109	20	3.0	20	97	0	109	40	27	18	13	1.88
47109397--47109461	27	2.4	27	89	0	103	20	15	20	44	1.86
47112935--47113032	20	4.9	20	81	2	90	40	24	22	12	1.88
47112925--47113027	40	2.5	41	80	7	104	40	24	20	14	1.90
47120000--47120066	22	3.0	22	76	4	64	22	20	14	41	1.89
47123849--47124019	43	4.0	42	73	13	159	25	16	23	33	1.96
47123849--47124009	86	1.9	85	82	8	202	26	17	23	32	1.96
47127251--47127419	92	1.8	92	85	3	241	23	27	19	28	1.98
47127198--47127470	141	1.9	142	82	6	340	24	27	19	28	1.98
47131021--47131075	21	2.6	21	94	0	101	25	9	34	30	1.87
47134012--47134229	49	4.6	47	76	11	169	24	31	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47141273--47141308	17	2.1	17	89	0	54	83	0	13	2	0.76
47160509--47160687	47	3.8	49	81	13	223	30	27	19	22	1.98
47160516--47160687	94	1.8	93	91	1	281	29	27	19	23	1.98
47161107--47161166	30	2.0	30	83	6	77	28	26	6	38	1.81
47169277--47169400	39	3.2	39	85	0	176	33	20	24	21	1.97
47169276--47169422	78	1.9	77	84	4	197	32	21	25	20	1.97
47177164--47177291	39	3.3	38	82	4	157	32	19	26	21	1.97
47181018--47181075	28	2.1	28	100	0	116	27	20	27	24	1.99
47185090--47185214	39	3.2	39	88	0	178	33	20	24	22	1.97
47189084--47189113	8	3.6	8	91	8	51	33	0	0	66	0.92
47189083--47189112	9	3.4	9	90	9	53	30	0	0	70	0.88
47189191--47189266	10	7.6	10	70	15	50	32	2	2	61	1.23
47189191--47189265	30	2.5	31	78	12	84	33	2	2	61	1.24
47189250--47189306	28	2.0	28	80	12	64	21	7	3	68	1.29
47189483--47189523	22	1.9	21	90	5	64	24	4	4	65	1.32
47189615--47189654	15	2.6	16	80	11	57	67	0	0	32	0.91
47193654--47193744	44	2.0	45	97	2	175	28	8	28	34	1.87
47193791--47193843	24	2.2	24	90	6	81	41	0	0	58	0.98
47195263--47195305	2	21.5	2	100	0	86	51	0	0	48	1.00
47197579--47197637	29	2.0	29	96	0	109	32	16	11	38	1.86
47200047--47200114	31	2.2	31	91	0	109	41	8	14	35	1.77
47201103--47201127	9	2.8	9	100	0	50	92	0	8	0	0.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47203899--47203950	5	10.4	5	83	8	70	61	0	1	36	1.07
47204656--47204854	109	1.8	108	93	3	346	35	9	7	47	1.63
47207630--47207663	17	2.0	17	88	11	52	47	0	8	44	1.34
47216823--47216855	18	1.9	18	88	11	52	39	18	0	42	1.50
47218729--47218767	21	1.9	20	89	5	60	46	20	0	33	1.51
47222734--47222779	24	1.9	24	90	0	74	10	30	13	45	1.77
47228529--47228680	39	3.9	39	93	0	250	23	22	31	22	1.98
47234183--47234282	39	2.4	41	80	11	114	28	29	15	28	1.96
47236241--47236309	21	3.2	21	63	25	54	26	27	14	31	1.95
47236238--47236322	43	2.0	43	95	0	152	25	29	12	31	1.93
47236826--47236886	30	2.0	30	83	0	77	31	22	8	37	1.84
47242817--47243224	48	8.4	48	95	1	717	30	26	6	36	1.82
47242817--47243224	146	2.8	146	96	0	748	30	26	6	36	1.82
47244238--47244280	2	21.5	2	100	0	86	51	0	0	48	1.00
47251483--47251521	21	1.9	20	89	5	60	46	20	0	33	1.51
47254627--47254867	39	6.2	39	91	0	374	24	20	31	24	1.98
47256839--47257036	71	2.8	70	92	3	294	33	17	28	20	1.95
47256905--47257022	41	3.1	41	60	28	98	32	17	28	21	1.96
47256873--47257036	71	2.3	71	100	0	328	35	17	28	18	1.94
47264379--47264576	71	2.8	70	92	3	294	33	17	28	20	1.95
47264445--47264562	41	3.1	41	60	28	98	32	17	28	21	1.96
47264413--47264576	71	2.3	71	100	0	328	35	17	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47279400--47279446	16	2.9	16	80	0	58	10	19	23	46	1.80
47281747--47281988	24	10.1	24	96	0	405	35	24	18	20	1.95
47281753--47281984	119	1.9	119	96	0	428	35	25	18	20	1.96
47288817--47288999	40	4.6	39	83	6	219	24	21	28	25	1.99
47288817--47288996	78	2.3	79	84	5	222	25	21	28	25	1.99
47296968--47297148	78	2.3	80	84	6	235	24	22	28	24	1.99
47296969--47297151	40	4.6	39	80	10	212	24	21	28	25	1.99
47299674--47299843	46	3.7	45	80	12	186	28	27	20	23	1.99
47299679--47299849	93	1.8	93	91	0	279	28	27	21	22	1.99
47300272--47300331	30	2.0	30	90	0	93	30	25	8	36	1.85
47307195--47307321	46	2.8	45	90	7	211	29	25	22	22	1.99
47308857--47309272	50	8.4	49	78	6	362	23	29	20	26	1.99
47308898--47309280	98	3.9	99	88	6	478	24	29	20	25	1.99
47317625--47317698	36	2.1	36	97	0	139	25	28	6	39	1.81
47321778--47321838	30	2.1	29	90	3	95	27	14	22	34	1.94
47326141--47326167	8	3.4	8	100	0	54	29	14	11	44	1.80
47344078--47344119	22	1.9	22	95	0	75	35	2	14	47	1.57
47344301--47344331	16	2.0	15	93	6	53	54	0	0	45	0.99
47350625--47350721	22	4.4	21	82	13	115	73	1	2	23	1.01
47350625--47350703	31	2.6	30	82	9	99	72	1	1	25	1.00
47350585--47350721	43	3.0	46	73	21	126	70	1	4	23	1.13
47350626--47350695	10	6.7	10	79	9	77	72	1	0	25	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47356233--47356415	40	4.6	40	82	3	172	22	26	22	27	1.99
47364345--47364528	40	4.6	40	78	4	167	23	26	22	27	2.00
47369213--47369388	96	1.8	96	83	6	237	26	18	30	25	1.98
47369072--47369391	46	6.8	47	72	15	189	26	17	30	25	1.98
47375592--47375706	46	2.5	44	81	6	124	28	17	28	25	1.97
47378001--47378168	92	1.8	91	93	1	291	28	27	20	23	1.99
47377996--47378165	46	3.7	45	77	14	186	29	26	20	23	1.99
47378043--47378184	45	3.1	43	73	16	119	29	28	19	22	1.98
47380555--47380625	15	4.9	15	83	10	69	57	15	15	11	1.65
47384506--47384687	40	4.6	40	79	8	176	24	24	28	23	2.00
47384506--47384687	78	2.3	80	82	6	210	24	24	28	23	2.00
47386828--47386998	93	1.8	93	92	2	290	28	26	21	23	1.99
47386823--47386994	46	3.7	45	79	13	197	29	26	20	23	1.99
47386825--47387014	46	4.1	43	75	15	125	28	26	20	23	1.99
47389384--47389454	15	4.9	15	83	10	69	57	15	15	11	1.65
47393332--47393513	40	4.6	40	79	8	176	24	24	28	23	2.00
47393332--47393513	78	2.3	80	82	6	210	24	24	28	23	2.00
47401365--47401546	40	4.6	40	79	8	176	24	24	28	23	2.00
47401365--47401546	78	2.3	80	82	6	210	24	24	28	23	2.00
47403683--47403854	46	3.7	46	79	10	206	28	26	21	23	1.99
47403688--47403858	93	1.8	93	93	0	297	28	26	21	23	1.99
47403685--47403874	46	4.1	44	73	17	138	28	26	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47406620--47406933	46	6.6	47	79	10	288	26	19	29	24	1.98
47411342--47411492	40	3.8	41	80	10	145	27	24	20	27	1.99
47411321--47411499	80	2.2	80	77	13	181	26	25	21	26	2.00
47411314--47411499	40	4.6	39	77	10	144	26	26	21	25	1.99
47423151--47423333	24	7.6	24	95	0	267	22	19	25	33	1.97
47423151--47423355	48	4.3	48	89	2	171	23	19	24	32	1.97
47423151--47423355	72	2.8	72	79	5	227	23	19	24	32	1.97
47426470--47426655	40	4.7	40	83	5	146	25	25	22	26	2.00
47438802--47438907	29	3.7	29	88	0	131	23	16	31	28	1.97
47447794--47447876	42	2.0	42	100	0	166	30	4	16	48	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328