genome.fa.s7.2.7.7.80.10.50.1000.303.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr07 97507971 
Parameters: 2 7 7 80 10 50 1000
Length:  97507971

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   

This is table  303  of  328  ( 39316 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90188438--90188477	18	2.2	19	91	8	66	10	25	47	17	1.78
90211797--90211963	40	4.2	39	81	5	176	23	25	22	28	1.99
90211797--90211963	80	2.1	79	82	5	194	23	25	22	28	1.99
90216817--90216845	11	2.7	11	94	5	51	31	0	20	48	1.50
90218282--90218412	30	4.5	30	85	10	164	31	13	25	29	1.94
90218282--90218412	58	2.2	58	85	6	167	31	13	25	29	1.94
90224609--90224648	9	4.2	9	87	6	53	82	0	17	0	0.67
90228211--90228394	25	7.4	25	91	3	273	28	12	10	48	1.74
90229255--90229432	45	4.0	46	91	4	274	22	23	25	28	1.99
90229255--90229474	90	2.5	89	88	8	308	23	22	26	26	2.00
90231938--90232066	24	5.4	24	93	4	199	25	23	21	29	1.99
90231938--90232065	47	2.7	48	91	6	197	25	23	21	28	1.99
90232116--90232175	20	3.0	20	87	4	95	31	21	11	35	1.90
90232218--90232265	25	1.9	25	86	0	69	25	16	25	33	1.96
90234579--90234720	40	3.5	40	83	1	124	27	23	26	22	1.99
90234618--90234746	40	3.2	39	84	6	152	24	22	27	25	2.00
90242046--90242204	25	6.4	25	91	0	239	28	11	11	49	1.73
90242521--90242554	2	17.0	2	100	0	68	50	0	0	50	1.00
90244536--90244684	80	1.9	80	81	2	183	22	30	24	22	1.99
90244577--90244684	40	2.7	38	85	8	128	21	29	25	23	1.99
90246404--90246646	45	5.5	45	90	5	363	23	22	27	26	1.99
90256391--90256516	55	2.3	55	86	1	173	30	30	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90257277--90257547	47	5.7	47	76	13	200	24	29	18	26	1.98
90269933--90270021	44	2.0	44	100	0	178	32	22	11	33	1.89
90270935--90270985	26	2.0	26	84	7	68	47	3	9	39	1.55
90281094--90281123	2	15.0	2	100	0	60	50	0	0	50	1.00
90286554--90286588	18	1.9	18	100	0	70	37	5	5	51	1.50
90286131--90286963	434	1.9	433	97	0	1576	37	9	18	34	1.84
90296363--90296473	55	2.0	55	100	0	222	23	14	18	43	1.87
90296684--90296733	10	5.0	10	79	13	50	24	8	2	66	1.29
90296694--90296733	20	2.0	20	90	9	64	25	7	2	65	1.32
90297449--90297482	18	1.9	18	94	5	61	26	11	5	55	1.58
90297494--90297534	22	1.9	21	85	14	57	24	9	2	63	1.37
90298069--90298146	18	4.3	18	73	19	65	62	2	0	34	1.09
90298070--90298099	15	2.0	15	93	0	51	70	0	0	30	0.88
90298083--90298153	20	3.7	20	79	11	76	60	2	0	36	1.11
90298069--90298185	9	12.8	9	67	22	50	60	3	0	35	1.19
90298109--90298164	20	2.8	20	75	5	51	58	3	1	35	1.26
90298876--90298932	28	2.0	29	82	3	71	61	1	3	33	1.23
90300143--90300174	13	2.5	13	94	0	55	40	6	6	46	1.54
90302449--90302475	12	2.2	12	100	0	54	74	0	0	25	0.83
90305031--90305196	44	3.9	43	73	16	164	25	15	26	32	1.96
90307078--90307116	2	19.5	2	100	0	78	48	0	0	51	1.00
90316223--90316332	26	4.2	26	91	2	168	35	4	23	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90317793--90317842	26	1.9	26	87	0	73	34	22	16	28	1.95
90317949--90318061	27	4.2	27	85	3	129	16	23	23	36	1.94
90317947--90318061	54	2.1	54	88	3	169	16	23	23	36	1.94
90319473--90319690	81	2.7	82	89	3	323	40	8	17	33	1.80
90331868--90331949	26	3.2	26	100	0	164	35	26	7	30	1.84
90338774--90338881	26	4.2	26	97	0	207	36	26	6	30	1.82
90340943--90341008	30	2.2	30	86	5	89	43	21	6	28	1.76
90346226--90346295	32	2.2	32	89	5	106	28	41	12	17	1.86
90347656--90347750	33	2.9	33	88	1	129	21	22	12	44	1.85
90353850--90353992	57	2.5	56	85	2	187	39	20	17	22	1.92
90353853--90354078	28	8.0	28	71	10	156	38	22	15	24	1.92
90358420--90358471	6	8.7	6	93	0	86	34	0	15	50	1.45
90361882--90361910	2	14.5	2	100	0	58	51	0	0	48	1.00
90362993--90363250	68	3.9	63	74	13	182	24	29	16	29	1.96
90363911--90363971	30	2.0	30	83	0	77	31	22	8	37	1.84
90365912--90365978	33	2.0	33	97	0	125	47	8	16	26	1.76
90366856--90366905	26	1.9	26	88	8	75	78	0	18	4	0.91
90367479--90367676	42	4.7	42	85	1	245	34	20	19	25	1.96
90368091--90368127	20	1.9	20	94	5	67	0	8	8	83	0.80
90373689--90373917	45	5.0	45	72	12	178	34	15	24	25	1.95
90373878--90374071	55	3.6	54	84	4	248	35	18	24	21	1.95
90373883--90374093	108	2.0	109	88	1	318	37	17	24	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90379358--90379525	40	4.2	40	81	6	198	27	27	21	23	1.99
90379349--90379525	80	2.2	79	85	6	234	27	27	21	24	1.99
90379983--90380070	44	2.0	44	100	0	176	36	29	9	25	1.86
90382606--90382650	4	11.2	4	95	0	72	51	4	24	20	1.66
90388638--90388719	6	13.5	6	85	3	67	74	6	6	13	1.20
90390828--90390866	17	2.3	17	90	0	60	12	38	28	20	1.89
90401081--90401116	10	3.5	10	85	7	54	77	2	2	16	1.00
90401140--90401186	25	1.9	25	87	12	71	55	4	6	34	1.45
90402143--90402185	14	2.9	14	80	10	50	83	0	11	4	0.78
90402308--90402376	3	22.7	3	85	2	75	59	0	5	34	1.21
90403286--90403359	20	3.9	20	70	26	54	37	0	1	60	1.05
90403252--90403357	48	2.1	49	81	10	126	41	0	0	57	1.05
90403291--90403352	9	6.6	9	72	17	54	35	0	1	62	1.05
90403288--90403367	28	2.9	28	82	8	94	40	0	1	58	1.06
90408241--90408401	43	3.7	43	92	0	250	25	19	30	24	1.98
90408479--90408559	31	2.5	31	80	4	81	61	18	3	16	1.48
90408805--90408850	21	2.2	21	84	0	56	2	50	19	28	1.60
90414490--90414706	9	23.4	9	79	5	175	38	1	12	47	1.51
90414490--90414707	27	7.9	27	80	8	213	38	1	13	47	1.51
90414812--90414867	15	3.8	15	76	21	64	51	0	1	46	1.11
90415077--90415778	289	2.4	289	99	0	1390	36	13	13	36	1.84
90419635--90419770	26	5.2	26	94	0	236	33	5	25	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90421558--90421844	137	2.1	137	96	0	520	24	18	25	31	1.98
90422833--90422883	12	4.3	11	79	16	57	39	1	0	58	1.09
90422872--90422903	15	2.1	15	94	0	55	31	9	0	59	1.29
90423915--90424132	41	5.3	41	88	3	289	16	23	25	34	1.95
90425705--90425763	32	1.9	29	83	10	73	57	3	1	37	1.25
90427974--90428007	17	2.0	17	88	11	52	67	0	0	32	0.91
90428258--90428333	22	3.7	21	76	15	68	40	17	6	35	1.75
90428287--90428384	35	2.7	37	87	12	150	35	16	10	37	1.82
90428294--90428384	19	4.9	19	92	8	161	36	15	10	37	1.83
90428737--90428936	45	4.5	45	88	1	303	23	28	15	33	1.95
90428737--90428920	89	2.1	90	92	1	307	24	28	14	32	1.95
90428950--90429165	78	2.8	78	89	0	333	25	23	19	31	1.98
90429357--90429481	45	2.8	44	75	3	117	25	24	15	35	1.94
90429505--90429721	78	2.8	78	90	4	339	25	23	18	31	1.98
90428790--90429984	555	2.1	555	92	0	1989	25	23	18	32	1.97
90433043--90433171	44	2.8	45	82	4	152	34	13	24	27	1.93
90440398--90440526	44	2.8	45	82	4	152	34	13	24	27	1.93
90447904--90447938	18	2.0	18	88	5	54	68	0	0	31	0.90
90448190--90448247	22	2.6	22	84	7	73	43	17	5	34	1.71
90448226--90448298	19	3.9	19	87	7	114	35	15	10	38	1.82
90448219--90448306	36	2.4	36	81	3	115	35	14	11	38	1.82
90448229--90448306	19	4.3	19	84	9	83	37	12	12	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90448773--90448841	24	2.9	24	86	4	95	46	8	7	37	1.63
90449126--90449159	16	2.1	16	94	0	59	17	11	14	55	1.68
90449186--90449231	16	2.9	16	83	0	56	19	34	10	34	1.87
90449430--90449613	93	2.0	93	96	0	341	27	24	8	39	1.85
90460787--90460847	24	2.5	24	91	2	95	44	8	6	40	1.60
90460787--90460857	24	2.9	24	87	2	79	45	7	7	40	1.58
90460796--90460864	24	2.9	24	82	4	59	46	5	7	40	1.55
90460878--90460940	30	2.1	30	90	0	99	30	12	12	44	1.80
90462560--90462601	21	2.1	19	86	8	57	54	30	0	14	1.40
90470670--90470844	46	3.8	46	78	13	205	29	29	20	20	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328