genome.fa.s9.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  100  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30629639--30629817	40	4.5	39	75	6	137	26	24	26	22	2.00
30639131--30639314	40	4.6	39	75	6	138	26	23	27	22	2.00
30639171--30639359	80	2.4	81	77	4	186	23	24	29	22	1.99
30644588--30644791	53	3.8	53	77	3	201	37	18	23	21	1.94
30656387--30656553	40	4.2	40	90	1	255	26	20	25	27	1.99
30656417--30656580	80	2.0	80	82	4	197	29	21	24	25	1.99
30663477--30663670	80	2.4	81	87	3	259	25	21	26	26	2.00
30663477--30663623	40	3.7	40	95	0	258	24	21	26	27	1.99
30665312--30665493	39	4.6	39	87	2	240	24	22	30	23	1.99
30674445--30674612	40	4.2	40	80	6	187	26	20	27	25	1.99
30679210--30679369	70	2.3	69	76	5	160	27	20	20	31	1.98
30679621--30679676	29	1.9	29	88	0	85	25	21	19	33	1.97
30679559--30679778	70	3.2	69	76	7	214	26	23	19	30	1.98
30681191--30681218	7	4.0	7	100	0	56	71	0	0	28	0.86
30682848--30682928	34	2.3	35	91	2	128	46	6	4	41	1.50
30684432--30684488	27	2.1	27	100	0	114	28	17	15	38	1.91
30693437--30693486	17	3.0	16	80	8	55	42	0	4	54	1.19
30694221--30694250	15	2.0	15	93	0	51	43	0	0	56	0.99
30696928--30696964	18	2.1	18	100	0	74	27	10	10	51	1.70
30699380--30699419	17	2.3	17	82	4	53	65	2	0	32	1.06
30700221--30700273	27	2.0	27	85	7	72	35	13	7	43	1.72
30702044--30702109	30	2.2	28	78	17	71	59	7	0	33	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30705001--30705048	14	3.4	14	85	8	62	45	6	29	18	1.74
30707547--30707710	40	4.1	40	79	6	179	24	21	28	25	1.99
30715662--30715825	40	4.1	40	79	6	179	24	21	28	25	1.99
30722969--30723011	12	3.7	12	93	3	70	11	4	6	76	1.13
30723380--30723426	14	3.4	14	85	5	60	44	6	29	19	1.75
30726951--30726984	15	2.3	15	89	0	50	50	17	11	20	1.77
30732437--30732497	29	2.1	28	91	8	97	29	13	16	40	1.86
30744404--30744561	38	4.1	38	90	4	244	18	21	27	31	1.97
30744555--30744682	46	2.9	45	84	7	140	25	23	27	23	2.00
30753536--30753702	40	4.2	40	82	2	185	24	26	22	26	2.00
30773313--30773362	26	1.9	26	87	0	73	38	22	18	22	1.94
30774429--30774504	24	3.3	22	85	7	73	43	11	31	13	1.80
30774449--30774504	24	2.4	24	90	3	87	46	10	30	12	1.76
30776566--30776783	40	5.5	40	87	2	271	22	23	27	25	2.00
30783940--30783995	11	5.5	11	71	16	57	35	12	19	32	1.89
30783929--30783995	20	3.3	20	93	0	116	34	11	20	32	1.90
30784046--30784174	25	5.2	25	88	8	167	31	19	23	26	1.98
30784358--30784421	31	2.1	31	87	0	92	35	14	25	25	1.93
30786709--30786759	13	4.2	13	73	14	54	13	0	15	70	1.17
30787882--30788077	43	4.6	42	78	6	200	23	18	26	30	1.98
30787877--30788077	84	2.4	84	87	4	262	24	18	25	30	1.98
30789508--30789540	13	2.4	14	90	5	50	24	0	12	63	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30791798--30792005	40	5.2	39	81	1	182	25	25	21	27	1.99
30791798--30791968	80	2.1	80	83	4	211	25	26	21	26	2.00
30793870--30794126	94	2.7	91	77	11	214	26	25	21	26	2.00
30793871--30794126	48	5.4	48	73	10	193	26	25	21	25	2.00
30797910--30798181	27	10.1	27	88	1	348	21	18	20	39	1.92
30800100--30800173	29	2.6	29	95	0	139	27	14	31	27	1.95
30800157--30800232	29	2.6	29	78	0	89	22	19	35	22	1.96
30800100--30800232	58	2.3	58	80	2	133	24	17	33	24	1.96
30807979--30808052	29	2.6	29	95	0	139	27	14	31	27	1.95
30808036--30808111	29	2.6	29	78	0	89	22	19	35	22	1.96
30807979--30808111	58	2.3	58	80	2	133	24	17	33	24	1.96
30809613--30809676	31	2.1	31	94	5	112	37	15	23	23	1.93
30810454--30810511	20	2.9	20	84	0	80	34	18	10	36	1.85
30818334--30818397	31	2.1	31	93	0	110	21	21	17	39	1.93
30818589--30818729	24	5.9	24	89	7	191	26	24	21	26	2.00
30818588--30818730	47	3.0	47	86	8	193	26	24	21	27	1.99
30818781--30818840	20	3.0	20	90	0	102	31	20	11	36	1.88
30818883--30818930	25	1.9	25	86	0	69	25	16	25	33	1.96
30822923--30822973	12	4.2	12	85	5	59	43	0	5	50	1.26
30832462--30832501	21	2.0	20	85	14	55	30	22	12	35	1.91
30836252--30836292	2	20.5	2	100	0	82	48	0	0	51	1.00
30839723--30840114	50	7.8	50	78	3	340	27	18	24	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30839824--30840001	51	3.5	51	79	7	218	28	20	22	28	1.99
30839769--30840100	101	3.3	101	86	0	425	27	19	24	29	1.98
30840312--30840341	16	1.9	15	93	6	51	43	0	23	33	1.54
30841105--30841169	32	2.0	32	100	0	130	35	9	27	27	1.87
30843461--30843507	23	2.0	23	91	0	76	17	6	25	51	1.69
30844315--30844443	49	2.6	49	86	3	170	27	21	28	22	1.99
30845503--30845536	2	17.0	2	93	0	59	50	2	0	47	1.16
30856077--30856118	2	21.0	2	95	0	75	52	0	0	47	1.00
30861814--30861943	40	3.2	40	82	4	165	23	28	24	23	2.00
30861814--30861977	40	4.1	40	78	4	145	21	28	25	25	1.99
30869851--30869980	40	3.2	40	82	4	165	23	28	24	23	2.00
30869851--30870014	40	4.1	40	78	4	145	21	28	25	25	1.99
30872838--30872868	2	15.5	2	100	0	62	51	0	0	48	1.00
30880278--30880445	40	4.2	40	85	5	207	26	28	22	23	1.99
30880278--30880445	80	2.1	80	87	4	241	26	28	22	23	1.99
30888285--30888452	40	4.2	40	85	5	207	26	28	22	23	1.99
30888285--30888452	80	2.1	80	87	4	241	26	28	22	23	1.99
30893900--30893996	33	2.9	34	80	10	110	26	25	21	25	2.00
30907737--30907784	15	3.1	15	79	5	51	37	0	14	47	1.44
30908068--30908198	44	3.0	42	79	8	131	25	16	22	35	1.95
30915758--30915919	43	3.8	42	79	8	157	21	18	27	32	1.97
30918346--30918387	21	2.0	21	95	0	75	50	0	11	38	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30922207--30922410	40	5.1	39	86	5	257	23	21	28	26	1.99
30922203--30922414	80	2.7	80	88	2	311	24	21	27	26	1.99
30924430--30924458	8	3.6	8	100	0	58	37	0	24	37	1.56
30925844--30926014	43	4.0	43	89	1	245	25	21	30	22	1.98
30928320--30928395	22	3.2	22	65	28	57	53	18	6	21	1.66
30928321--30928419	49	2.0	49	100	0	198	53	20	6	20	1.66
30930986--30931153	40	4.2	40	80	1	167	25	26	22	26	2.00
30944794--30944912	23	5.1	23	97	1	220	30	21	21	27	1.98
30944959--30945029	20	3.5	20	92	0	115	30	21	12	35	1.91
30951592--30951767	46	3.8	46	81	10	232	20	21	29	28	1.98
30951588--30951759	93	1.8	93	96	0	317	20	22	30	27	1.98
30958337--30958443	55	1.9	55	86	3	153	17	31	26	24	1.97
30962987--30963147	30	5.4	30	74	5	130	21	26	11	40	1.88
30962975--30963155	89	2.0	89	88	2	265	22	25	12	39	1.90
30968197--30968252	27	2.0	28	86	3	78	46	8	10	33	1.70
30968234--30968270	19	2.0	18	94	5	65	59	13	5	21	1.54
30968229--30968363	46	2.9	45	74	8	128	48	14	8	29	1.72
30971281--30971363	31	2.7	31	90	3	125	27	25	16	30	1.97
30971583--30971652	25	2.8	25	91	4	106	24	24	27	24	2.00
30972462--30972531	27	2.5	28	77	13	74	24	20	17	38	1.93
30972580--30972687	27	3.9	27	78	13	103	31	5	18	44	1.73
30972643--30972793	27	5.6	27	86	3	196	27	7	22	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30972668--30972826	54	2.9	54	83	3	196	28	11	21	38	1.88
30972644--30972793	81	1.9	81	87	2	221	28	7	22	42	1.80
30972643--30972826	81	2.3	81	82	5	212	28	9	21	40	1.85
30972668--30972833	27	6.1	27	80	7	149	28	11	22	37	1.89
30972825--30973022	27	7.3	27	83	2	227	39	8	23	29	1.83
30972825--30973022	81	2.4	81	89	1	290	39	8	23	29	1.83
30977063--30977215	39	3.9	39	93	0	252	24	22	31	22	1.98
30980767--30980817	12	4.2	12	75	9	50	54	13	13	17	1.70
30980774--30980932	30	5.2	30	87	5	230	49	12	16	21	1.79
30980774--30980932	61	2.6	61	88	6	166	49	12	16	21	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292