genome.fa.s9.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  114  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34732769--34732898	40	3.2	40	82	4	165	23	24	28	23	2.00
34739796--34739864	15	4.6	15	83	0	84	11	17	13	57	1.64
34739787--34739874	30	3.0	30	81	8	99	10	17	15	56	1.66
34742258--34742433	46	3.8	46	80	12	225	21	21	28	28	1.98
34742254--34742425	93	1.8	93	96	0	317	20	21	29	27	1.98
34746543--34746569	10	2.7	10	100	0	54	18	11	29	40	1.85
34748531--34748588	28	2.1	28	100	0	116	18	20	13	46	1.83
34749369--34749442	26	2.8	26	83	4	87	21	21	20	36	1.95
34749392--34749444	26	2.0	26	92	0	88	20	20	20	37	1.94
34753373--34753401	14	2.0	15	93	6	51	27	0	20	51	1.47
34758354--34758392	20	1.9	21	89	5	62	35	15	0	48	1.45
34758583--34758706	41	2.9	42	83	9	155	28	28	18	25	1.98
34758564--34758716	43	3.6	43	80	8	179	26	27	19	26	1.99
34762622--34762648	13	2.1	13	100	0	54	37	22	0	40	1.54
34764295--34764353	27	2.2	27	93	0	100	25	22	11	40	1.88
34764358--34764553	54	3.6	54	84	2	250	35	18	18	26	1.95
34764358--34764553	27	7.3	27	85	0	221	35	18	18	26	1.95
34764752--34764831	27	3.0	26	88	3	97	20	22	21	36	1.95
34765145--34765200	27	2.1	27	86	6	78	17	25	21	35	1.95
34765360--34765525	6	27.8	6	77	17	168	19	16	14	48	1.80
34765339--34765525	30	6.2	30	85	6	245	19	17	14	48	1.82
34771851--34771896	19	2.5	19	89	3	67	39	21	28	10	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34774554--34774975	3	142.7	3	67	13	130	63	3	6	27	1.33
34774558--34774642	17	4.9	17	67	25	54	63	4	4	27	1.34
34774538--34774792	20	12.7	20	68	21	81	63	2	6	27	1.32
34774636--34774704	31	2.4	28	82	7	84	66	0	7	26	1.17
34774893--34774936	19	2.3	19	88	4	61	72	2	6	18	1.17
34774902--34774933	13	2.3	15	89	10	50	71	0	6	21	1.07
34776601--34776903	129	2.3	132	88	3	452	26	23	18	31	1.97
34776599--34776825	45	5.2	44	70	15	150	26	21	19	31	1.98
34787284--34787519	49	4.7	50	75	6	203	26	18	25	30	1.98
34793584--34793613	11	2.9	10	90	9	51	0	30	0	70	0.88
34797347--34797404	30	1.9	30	86	6	82	24	32	25	17	1.96
34802353--34802439	43	2.0	43	82	8	106	28	19	24	27	1.98
34809806--34809841	13	2.8	13	91	0	63	11	2	5	80	0.98
34809806--34809842	14	2.8	14	88	12	60	10	5	5	78	1.08
34813583--34813666	31	2.7	31	92	1	143	27	26	17	28	1.98
34813690--34813781	42	2.2	42	92	0	148	33	19	15	31	1.93
34813929--34813997	25	2.8	25	89	6	97	24	24	26	24	2.00
34814925--34815032	27	3.9	28	79	11	107	31	6	17	44	1.74
34814930--34815113	54	3.4	54	75	11	144	30	7	18	43	1.78
34814989--34815137	81	1.9	80	85	4	210	30	10	18	40	1.84
34814988--34815124	27	5.1	27	79	5	127	29	9	21	40	1.84
34817053--34817199	31	4.8	31	95	0	251	28	25	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34818627--34818848	40	5.6	40	92	1	367	27	25	22	23	2.00
34823385--34823570	40	4.7	40	89	5	261	24	21	27	26	1.99
34823385--34823603	80	2.8	80	83	8	270	25	21	26	26	1.99
34831526--34831711	40	4.7	40	84	5	216	23	19	27	28	1.99
34838355--34838574	40	5.6	40	91	4	351	28	25	22	23	1.99
34838355--34838574	79	2.8	79	92	4	347	28	25	22	23	1.99
34840602--34840671	25	2.8	25	82	4	79	27	21	25	25	1.99
34841133--34841240	27	3.9	28	79	11	116	32	6	16	44	1.73
34841138--34841266	56	2.3	55	83	10	149	31	5	17	45	1.71
34841140--34841326	27	6.9	27	76	12	89	31	8	18	42	1.79
34841141--34841327	54	3.4	53	80	5	151	31	8	17	42	1.79
34841195--34841338	27	5.4	26	78	6	128	29	10	20	40	1.85
34848880--34848965	18	4.7	18	77	9	84	70	3	20	4	1.20
34848880--34848965	39	2.3	35	84	7	100	70	3	20	4	1.20
34849951--34849994	23	2.0	21	82	8	52	29	4	18	47	1.68
34853866--34853938	29	2.5	29	100	0	146	28	15	28	27	1.96
34869926--34869955	11	2.7	11	89	0	51	26	43	10	20	1.83
34871512--34871561	25	2.0	26	88	4	75	38	24	12	26	1.90
34871598--34871650	11	5.0	11	75	6	56	37	13	18	30	1.89
34871598--34871655	21	2.8	21	84	5	73	37	12	18	31	1.88
34871706--34871752	24	2.0	24	83	8	60	31	21	21	25	1.98
34879882--34879912	16	1.9	16	93	0	53	35	22	0	41	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34879879--34879918	20	2.0	20	85	0	53	37	22	0	40	1.54
34880102--34880357	55	4.8	54	79	9	253	21	25	16	36	1.94
34883656--34883723	16	4.2	16	73	12	50	75	2	19	2	1.07
34883646--34883712	29	2.1	33	84	13	88	76	4	16	2	1.08
34883692--34883716	13	1.9	13	100	0	50	80	4	16	0	0.87
34886772--34886972	99	2.0	99	85	1	267	29	26	17	25	1.98
34886961--34887112	68	2.3	66	82	7	184	26	26	15	30	1.96
34887778--34887838	30	2.0	30	90	0	95	29	24	6	39	1.80
34890536--34890632	30	3.2	30	75	2	97	29	14	25	29	1.95
34899361--34899423	20	3.1	20	81	4	81	38	17	28	15	1.91
34901861--34901923	21	3.1	21	79	4	67	15	23	17	42	1.88
34904366--34904413	21	2.3	20	89	3	69	45	22	18	12	1.83
34904366--34904422	20	2.8	21	86	2	71	42	21	22	14	1.88
34904957--34905012	27	2.1	26	84	15	71	32	10	17	39	1.84
34906763--34906802	10	4.0	10	83	0	53	12	25	20	42	1.86
34908188--34908227	10	4.0	10	83	0	53	12	25	20	42	1.86
34910747--34910813	5	12.8	5	76	10	55	76	4	17	1	1.04
34910751--34910799	26	1.9	25	84	12	64	79	4	14	2	0.97
34910872--34910896	12	2.1	12	100	0	50	76	0	16	8	1.02
34910863--34910916	18	3.0	18	80	0	63	66	1	18	12	1.33
34910872--34910953	30	2.7	30	75	0	83	63	1	23	12	1.35
34914295--34914342	15	3.3	15	73	5	53	31	0	25	43	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34914289--34914348	29	2.1	29	90	0	93	30	0	28	41	1.56
34918669--34918702	17	2.1	17	88	5	52	17	5	2	73	1.16
34918924--34918971	15	3.3	15	73	5	53	31	0	25	43	1.55
34918918--34918977	29	2.1	29	90	0	93	30	0	28	41	1.56
34920048--34920332	136	2.1	136	94	1	500	31	24	18	25	1.97
34922123--34922258	26	5.2	26	94	0	236	36	25	5	33	1.78
34924606--34924735	40	3.2	40	83	4	165	22	25	29	23	1.99
34940451--34940676	124	1.8	123	83	2	301	30	9	24	35	1.88
34940671--34940800	40	3.2	40	80	4	138	23	25	26	23	2.00
34945347--34945631	136	2.1	136	94	1	500	32	24	18	24	1.97
34947414--34947549	26	5.2	26	92	0	227	36	24	5	33	1.78
34951769--34951865	30	3.2	30	76	2	106	28	25	15	29	1.96
34953667--34953714	18	2.6	19	87	6	64	37	8	4	50	1.52
34956002--34956053	25	2.0	26	85	3	70	25	13	23	38	1.91
34957531--34957638	26	4.2	26	93	0	189	36	24	7	32	1.83
34961928--34961972	10	4.4	10	80	5	54	46	22	17	13	1.83
34961928--34961975	21	2.3	20	85	3	60	47	22	16	12	1.80
34963063--34963142	6	13.5	6	73	15	51	6	21	1	71	1.15
34963067--34963139	21	3.4	21	86	3	92	6	20	1	71	1.17
34963063--34963142	27	3.0	28	74	9	76	6	21	1	71	1.15
34966670--34966714	10	4.4	10	86	5	63	48	22	15	13	1.79
34966670--34966717	21	2.3	20	89	3	69	50	22	14	12	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34968567--34968611	14	3.3	14	78	6	56	35	0	15	48	1.45
34969585--34969644	29	2.1	29	93	0	102	41	30	0	28	1.56
34969591--34969638	15	3.3	15	73	5	53	43	27	0	29	1.55
34972508--34972549	21	2.0	21	100	0	84	19	23	23	33	1.97
34973088--34973152	10	6.3	11	84	7	75	18	7	6	67	1.36
34973107--34973180	9	8.0	9	83	8	69	17	4	8	70	1.28
34973095--34973160	21	3.3	19	76	17	64	16	6	6	71	1.27
34973088--34973177	10	9.2	10	78	16	66	17	5	5	71	1.26
34975571--34975612	21	2.0	21	81	9	50	28	11	26	33	1.92
34979538--34979581	10	4.4	10	85	0	61	36	20	22	20	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292