genome.fa.s9.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  191  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56973072--56973284	55	3.8	54	78	9	178	56	7	14	22	1.62
56975756--56976227	243	1.9	245	84	4	641	37	16	13	32	1.88
56976354--56976428	4	19.0	4	83	2	71	69	4	6	20	1.28
56976486--56976525	20	2.0	20	95	0	71	45	10	22	22	1.82
56977965--56979399	44	32.5	44	75	8	886	30	22	15	31	1.95
56978228--56979402	89	13.4	88	74	7	719	30	22	15	31	1.95
56977948--56979349	133	10.6	132	75	8	1035	30	22	15	31	1.95
56978842--56978995	79	1.9	79	84	2	202	29	27	16	25	1.97
56978491--56979217	301	2.4	303	86	3	989	29	23	15	30	1.96
56979267--56979342	21	3.5	21	70	7	62	32	28	9	28	1.88
56979461--56979741	94	3.0	94	83	1	321	29	18	17	34	1.94
56987172--56987231	4	15.2	4	75	3	50	70	3	6	20	1.25
56988671--56988713	21	2.1	20	82	4	50	51	11	0	37	1.39
56990903--56990933	14	2.2	14	100	0	62	32	12	25	29	1.93
56991752--56992076	169	1.9	169	93	2	555	41	18	9	30	1.83
56993109--56993244	61	2.2	61	84	3	175	19	28	31	20	1.97
56994747--56994910	71	2.3	71	97	0	310	34	18	28	18	1.95
57002283--57002445	70	2.3	71	98	1	319	34	17	28	19	1.94
57005173--57005213	19	2.2	18	86	4	55	34	17	0	48	1.47
57005707--57005758	3	17.3	3	100	0	104	32	0	0	67	0.91
57022348--57022385	20	1.9	20	94	0	67	28	0	2	68	1.03
57022348--57022386	10	3.8	10	82	3	51	28	0	2	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57024449--57024478	15	2.0	15	100	0	60	0	20	0	80	0.72
57024994--57025161	63	2.7	63	89	0	237	29	19	23	27	1.98
57027884--57028058	46	3.8	46	79	13	207	20	20	29	29	1.98
57027881--57028050	93	1.8	93	96	0	313	21	21	29	28	1.98
57031007--57031075	15	4.6	15	83	0	84	11	17	13	57	1.64
57030998--57031085	30	3.0	30	81	8	99	10	17	15	56	1.66
57033456--57033631	46	3.8	46	80	12	225	21	21	28	28	1.98
57033453--57033623	93	1.8	93	96	0	315	21	21	29	28	1.98
57036578--57036646	15	4.6	15	83	0	84	11	17	13	57	1.64
57036569--57036656	30	3.0	30	81	8	99	10	17	15	56	1.66
57040124--57040307	40	4.6	39	75	6	138	26	23	27	22	2.00
57040164--57040352	80	2.4	81	77	4	186	23	24	29	22	1.99
57048201--57048384	40	4.6	39	75	6	138	26	23	27	22	2.00
57048241--57048429	80	2.4	81	77	4	186	23	24	29	22	1.99
57056869--57056984	45	2.6	45	90	1	189	31	19	24	25	1.98
57057122--57057329	27	7.7	27	79	0	200	43	15	13	27	1.85
57057115--57057329	54	4.0	54	83	0	268	43	16	13	26	1.85
57057178--57057330	81	1.9	81	87	0	225	43	15	11	29	1.82
57061552--57061729	29	6.0	29	78	5	178	22	28	11	37	1.89
57061566--57061755	89	2.1	88	87	3	274	22	27	11	38	1.88
57064104--57064145	16	2.6	16	96	0	75	52	28	11	7	1.64
57070854--57070956	37	2.8	37	95	0	179	23	32	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57071097--57071482	48	8.0	48	97	0	700	30	27	6	35	1.83
57074560--57074745	27	6.9	27	85	4	232	30	22	7	39	1.82
57074548--57074745	81	2.4	81	87	1	272	29	23	7	39	1.82
57074749--57074876	27	4.7	27	81	1	105	42	20	8	28	1.81
57074744--57074876	54	2.5	53	79	3	140	40	19	9	30	1.84
57074744--57074899	81	1.9	81	84	5	208	42	19	8	29	1.80
57074774--57074900	27	4.7	27	84	0	146	43	20	7	29	1.78
57074775--57074958	54	3.4	54	78	4	172	42	19	7	30	1.77
57075004--57075081	27	2.9	27	75	11	70	37	19	20	23	1.95
57075788--57075874	20	4.3	20	92	2	131	41	10	17	31	1.83
57075924--57076059	52	2.7	51	94	5	233	27	22	23	26	1.99
57075924--57076059	26	5.3	26	89	3	199	27	22	23	26	1.99
57076192--57076283	42	2.2	42	90	0	139	30	14	20	34	1.92
57076307--57076385	31	2.5	31	95	0	140	30	18	25	25	1.98
57083919--57083961	21	2.0	21	95	0	77	44	34	9	11	1.73
57087821--57087870	26	1.9	26	95	0	91	32	20	10	38	1.85
57088768--57088801	15	2.2	16	89	5	52	64	0	2	32	1.08
57092832--57092896	20	3.4	19	85	6	87	60	0	1	38	1.07
57092833--57092896	19	3.3	20	85	10	89	59	0	1	39	1.07
57092866--57092908	18	2.5	17	82	10	52	55	0	0	44	0.99
57095555--57095608	21	2.6	21	93	0	99	22	33	31	12	1.92
57097207--57097348	27	5.3	26	85	4	149	36	22	22	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57097207--57097346	54	2.6	55	85	2	176	36	22	22	18	1.95
57098938--57099047	26	4.2	26	97	0	193	36	25	5	32	1.79
57104132--57104339	40	5.2	40	83	2	222	25	26	22	25	2.00
57112230--57112437	40	5.2	40	83	2	222	25	26	22	25	2.00
57119524--57119572	20	2.4	21	96	3	91	38	24	0	36	1.56
57120507--57120536	2	15.5	2	93	6	53	50	0	0	50	1.00
57120573--57120636	31	2.1	31	96	0	119	39	17	0	43	1.49
57126717--57126813	47	2.1	47	100	0	194	21	19	20	38	1.94
57133052--57133233	40	4.6	40	88	2	260	26	26	24	22	2.00
57140946--57141127	40	4.6	40	93	2	296	26	26	23	23	2.00
57147935--57148116	40	4.6	40	93	2	296	26	26	23	23	2.00
57151213--57151245	12	2.8	12	95	0	57	33	27	27	12	1.92
57155611--57155703	42	2.2	43	84	5	118	29	24	20	25	1.99
57157231--57157413	39	4.6	39	87	0	240	22	30	22	24	1.99
57164665--57164847	39	4.6	39	87	0	240	22	30	22	24	1.99
57186907--57186965	29	2.0	29	100	0	118	33	16	10	38	1.83
57196870--57197007	55	2.5	55	81	0	150	29	28	26	15	1.96
57200463--57200646	40	4.6	39	75	6	138	26	23	27	22	2.00
57200507--57200691	80	2.3	80	79	1	183	22	24	30	23	1.99
57208638--57208688	22	2.5	21	80	20	63	41	5	0	52	1.25
57212220--57212252	17	2.0	16	94	5	57	63	0	0	36	0.95
57216630--57216659	6	5.2	6	96	4	53	16	0	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57218917--57218950	16	2.1	17	94	5	61	41	0	11	47	1.40
57219415--57219453	18	2.2	18	100	0	78	33	0	15	51	1.44
57225322--57225492	40	4.3	39	77	10	159	28	21	26	23	1.99
57233360--57233530	40	4.3	39	77	10	159	28	21	26	23	1.99
57235042--57235113	33	2.2	33	85	7	92	29	25	20	25	1.99
57236625--57236667	21	2.0	22	86	4	61	53	4	34	6	1.49
57255623--57255870	76	3.3	75	80	6	259	34	22	18	24	1.96
57255738--57255870	40	3.4	39	75	22	138	38	22	18	21	1.93
57255727--57255875	40	3.9	37	72	17	117	38	23	18	20	1.93
57259400--57259480	42	1.9	42	97	0	153	46	25	6	20	1.74
57263826--57264004	76	2.3	75	77	5	180	36	20	18	25	1.95
57268221--57268315	40	2.4	40	85	1	120	25	31	15	27	1.96
57270176--57270220	3	15.3	3	95	4	83	31	0	0	68	0.89
57271339--57271638	76	4.0	74	80	6	291	27	20	20	32	1.97
57271354--57271561	40	5.4	39	67	15	128	26	21	21	30	1.98
57271339--57271638	152	2.0	150	83	5	372	27	20	20	32	1.97
57273457--57273509	26	2.0	26	96	0	97	16	1	22	58	1.48
57274836--57274873	14	2.9	13	81	11	51	18	13	10	57	1.63
57279836--57279892	9	5.8	10	76	15	57	36	8	19	35	1.83
57279835--57279909	20	3.8	20	91	6	111	37	9	18	34	1.83
57279854--57279909	11	5.5	11	71	16	57	37	10	19	32	1.86
57279959--57280053	26	3.7	26	91	1	138	27	22	23	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57284022--57284194	46	3.7	46	75	7	179	29	26	20	23	1.99
57284027--57284197	93	1.8	93	91	0	279	28	26	21	23	1.99
57290714--57290770	20	2.9	21	87	10	77	38	8	19	33	1.82
57290820--57290891	26	2.8	26	93	2	119	26	23	23	26	2.00
57299337--57299514	40	4.4	40	93	0	284	33	29	19	17	1.95
57305205--57305371	40	4.2	40	79	6	169	26	22	26	24	2.00
57313173--57313314	40	3.5	40	83	1	124	27	23	26	22	1.99
57313212--57313340	40	3.2	39	84	6	152	24	22	27	25	2.00
57314619--57314720	40	2.5	40	76	4	116	22	23	27	26	2.00
57321506--57321544	19	2.0	20	90	5	62	48	5	12	33	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292