genome.fa.s9.2.7.7.80.10.50.1000.171.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  171  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50805031--50805194	71	2.3	71	100	0	328	35	17	28	18	1.94
50812304--50812353	24	2.1	24	100	0	100	20	32	0	48	1.50
50817300--50817366	24	2.9	23	86	8	91	22	20	14	41	1.89
50821786--50821854	24	2.9	24	91	0	102	23	17	14	44	1.85
50822975--50823007	12	2.8	12	95	0	57	9	21	48	21	1.77
50826848--50826946	45	2.2	45	90	1	153	42	23	9	25	1.83
50828312--50828351	22	1.9	22	85	10	57	45	7	17	30	1.76
50832201--50832619	27	15.6	27	77	5	210	38	21	9	31	1.85
50832610--50832799	27	7.0	27	85	0	245	34	20	21	24	1.97
50833001--50833069	25	2.8	25	88	0	102	27	24	23	24	2.00
50833289--50833371	31	2.7	31	94	3	143	30	16	25	27	1.97
50835735--50835803	27	2.6	27	88	0	102	20	23	23	33	1.97
50835756--50835837	26	3.1	26	78	1	74	20	20	23	35	1.96
50841037--50841188	40	3.8	40	80	4	180	25	26	23	25	2.00
50841022--50841187	80	2.1	80	83	3	208	24	26	23	25	2.00
50849057--50849222	80	2.1	81	83	3	210	24	25	22	26	2.00
50849044--50849223	40	4.5	39	81	6	173	24	25	23	26	2.00
50852778--50853210	119	3.6	119	93	0	713	34	17	18	29	1.94
50853170--50853415	84	3.0	83	87	2	350	34	20	18	26	1.96
50854901--50854934	16	2.1	17	88	5	52	38	0	2	58	1.13
50854901--50854989	17	5.1	16	72	24	65	35	2	1	60	1.16
50854889--50854986	20	4.8	20	73	17	69	35	2	1	61	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50854850--50854988	54	2.6	54	78	11	133	33	3	1	61	1.22
50854916--50855051	40	3.2	44	72	23	116	34	5	0	59	1.25
50854910--50854969	3	19.0	3	74	16	50	35	1	1	61	1.16
50855718--50855751	16	2.1	17	88	5	52	23	11	8	55	1.63
50859111--50859150	19	2.1	19	86	9	55	32	20	5	42	1.73
50861255--50861350	40	2.4	41	86	6	126	29	28	16	26	1.97
50867594--50867667	30	2.5	29	82	6	87	24	28	14	32	1.95
50869749--50870085	170	2.0	170	93	0	575	29	17	14	37	1.90
50871514--50871583	27	2.5	28	93	2	115	30	28	14	27	1.95
50875545--50875580	12	2.8	13	91	4	56	13	0	2	83	0.76
50880593--50880649	26	2.3	26	84	6	73	24	1	7	66	1.26
50880608--50880662	26	2.1	26	90	6	85	21	0	5	72	1.04
50880561--50880659	34	2.8	36	72	18	100	24	2	6	67	1.24
50880616--50880662	16	2.8	17	76	23	55	23	0	4	72	1.02
50880644--50880683	20	2.0	21	85	14	57	20	2	5	72	1.15
50883956--50883988	2	16.5	2	100	0	66	51	0	0	48	1.00
50884001--50884048	23	2.0	23	84	12	60	35	8	10	45	1.68
50883996--50884041	21	2.2	22	84	7	60	36	8	8	45	1.66
50884188--50884242	25	2.2	26	83	9	69	25	9	7	58	1.55
50886127--50886184	19	3.1	18	73	24	57	34	0	3	62	1.12
50890128--50890175	23	2.1	23	100	0	96	41	4	8	45	1.53
50903025--50903084	17	3.5	17	74	21	63	65	0	1	33	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50903565--50903697	18	7.5	17	88	5	185	36	12	11	39	1.79
50903565--50903706	35	4.0	35	95	2	239	37	13	10	38	1.79
50906375--50906451	28	2.8	28	88	4	102	31	15	22	31	1.95
50906354--50906452	28	3.5	28	83	4	101	28	16	25	30	1.96
50914829--50915011	46	3.8	46	79	16	217	19	21	30	28	1.98
50916839--50916916	28	2.8	28	88	3	113	32	14	21	32	1.93
50931593--50931622	14	2.1	14	93	0	51	16	0	36	46	1.47
50944660--50944693	16	2.0	17	88	11	52	41	0	5	52	1.25
50947447--50947493	21	2.2	22	77	11	53	25	27	14	31	1.95
50961358--50961510	40	3.9	39	83	5	159	22	32	22	22	1.98
50961388--50961510	39	3.2	39	88	4	178	24	32	20	22	1.98
50969048--50969201	39	3.9	40	83	0	168	24	30	22	23	1.99
50969078--50969201	39	3.2	39	87	1	176	25	31	19	23	1.98
50978542--50978597	26	2.2	26	96	0	103	64	1	0	33	1.04
50984137--50984188	18	3.1	17	76	10	54	42	3	5	48	1.45
50984593--50984630	18	2.1	18	95	0	67	50	13	5	31	1.63
50987874--50987991	41	3.1	41	60	28	98	32	17	28	21	1.96
50987842--50988005	71	2.3	71	100	0	328	35	17	28	18	1.94
50995053--50995279	48	4.8	48	74	9	216	29	20	22	26	1.99
50995248--50995324	38	2.0	38	92	5	129	35	24	18	22	1.96
50998049--50998100	26	2.0	26	100	0	104	19	15	11	53	1.71
51000071--51000203	29	4.6	30	85	3	141	27	16	30	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51000236--51000270	2	17.5	2	100	0	70	48	0	0	51	1.00
51002988--51003131	59	2.4	60	83	5	168	24	18	18	38	1.93
51002999--51003136	60	2.3	59	83	6	163	23	18	19	38	1.93
51005458--51005513	22	2.5	22	97	0	103	25	14	39	21	1.91
51008928--51008997	27	2.6	27	95	2	122	30	27	14	28	1.95
51014489--51014559	35	2.0	35	100	0	142	25	8	33	32	1.86
51015473--51015501	2	14.5	2	100	0	58	48	0	0	51	1.00
51030099--51030308	40	5.2	40	88	2	305	21	28	24	25	1.99
51038235--51038444	40	5.2	40	88	2	305	21	28	24	25	1.99
51045797--51045927	40	3.3	40	78	2	147	25	23	27	23	2.00
51048173--51048240	34	2.0	34	94	0	118	32	14	23	29	1.94
51059761--51059828	27	2.5	28	92	4	113	42	27	10	19	1.83
51062505--51062548	19	2.4	19	85	7	56	50	0	9	40	1.34
51064366--51064434	28	2.5	28	95	2	122	43	27	10	18	1.82
51070176--51070302	44	2.9	43	73	14	109	29	24	18	27	1.98
51072747--51072868	45	2.7	45	83	2	147	35	27	12	24	1.91
51075445--51075611	49	3.5	48	77	4	158	30	20	26	22	1.98
51075573--51075676	48	2.2	48	80	0	118	30	19	21	28	1.97
51080414--51080579	40	4.2	40	82	3	176	24	27	22	26	2.00
51090964--51091129	40	4.2	40	82	3	176	24	27	22	26	2.00
51098640--51098777	49	2.8	49	85	7	183	29	22	27	20	1.98
51098639--51098854	48	4.5	49	75	9	183	29	21	25	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51100513--51100696	78	2.3	82	82	8	220	23	27	24	23	2.00
51100506--51100696	40	4.8	39	76	10	163	23	28	24	24	2.00
51108515--51108699	79	2.3	81	83	7	227	23	27	24	24	2.00
51108508--51108699	40	4.8	39	76	8	163	23	28	23	24	2.00
51116520--51116704	79	2.3	81	83	7	227	23	27	24	24	2.00
51116513--51116704	40	4.8	39	76	8	163	23	28	23	24	2.00
51124844--51124941	31	3.2	31	72	2	90	48	10	17	23	1.77
51124923--51125024	31	3.2	32	79	5	118	44	11	23	20	1.84
51132818--51132979	43	3.8	43	76	10	154	31	22	14	32	1.93
51141708--51141819	43	2.6	43	82	0	143	29	24	16	29	1.97
51153474--51153503	8	3.8	8	90	0	51	50	23	23	3	1.64
51153751--51153826	28	2.7	28	100	0	152	36	25	7	30	1.84
51153960--51154049	28	3.2	27	85	7	119	20	24	23	32	1.98
51153960--51154074	55	2.1	56	83	8	146	19	24	21	34	1.96
51155120--51155153	10	3.3	10	84	8	50	29	8	8	52	1.62
51161339--51161368	8	3.8	8	90	0	51	50	23	23	3	1.64
51161619--51161708	28	3.2	28	92	3	146	34	27	6	31	1.83
51161814--51161895	28	3.0	27	80	7	94	23	24	21	30	1.99
51161824--51161903	27	2.9	28	81	9	92	22	23	22	31	1.99
51161824--51161914	27	3.2	28	80	7	78	23	25	20	30	1.98
51170056--51170129	27	2.7	27	95	0	130	35	14	17	32	1.91
51170055--51170156	27	3.8	27	86	2	125	36	14	16	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51170170--51170319	80	1.9	80	83	6	196	38	14	22	25	1.92
51170143--51170318	27	6.6	27	84	5	169	38	16	21	23	1.93
51170709--51170759	18	2.8	19	76	8	61	23	21	15	39	1.92
51174030--51174236	53	3.8	54	78	1	218	36	18	24	20	1.95
51185638--51185741	40	2.6	40	89	0	136	28	22	27	21	1.99
51185668--51185771	40	2.6	40	85	0	136	25	23	27	23	2.00
51191244--51191307	31	2.1	31	96	0	119	45	25	3	26	1.68
51193835--51193925	30	3.0	30	85	1	110	31	15	17	35	1.91
51194275--51194301	14	1.9	14	100	0	54	44	3	14	37	1.63
51198672--51198697	8	3.2	8	100	0	52	0	11	0	88	0.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292