Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  149  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44307294--44307569
7
38.4
7
68
6
104
46
30
0
23
1.56
44307327--44307536
80
2.6
80
95
0
377
45
30
0
23
1.57
44307528--44307569
13
3.2
13
86
6
57
47
30
0
21
1.51
44307893--44308388
155
3.3
152
75
11
486
30
20
19
29
1.97
44308048--44308325
139
2.0
137
87
4
396
29
20
20
29
1.98
44308280--44308413
40
3.4
39
74
7
126
28
20
17
34
1.95
44308385--44308437
27
2.0
27
88
0
79
20
13
20
45
1.84
44311256--44311368
23
4.9
23
82
4
129
24
19
25
30
1.98
44311253--44311384
23
5.7
23
79
7
115
25
18
24
31
1.97
44311257--44311384
46
2.8
46
85
2
159
25
18
24
31
1.98
44311256--44311384
69
1.9
69
80
3
152
25
18
24
31
1.98
44311375--44311450
25
3.2
25
62
24
63
17
19
21
42
1.90
44311831--44311905
36
2.1
36
100
0
150
44
8
16
32
1.76
44313912--44313946
12
3.1
12
92
8
56
31
0
42
25
1.55
44315317--44315524
40
5.2
40
84
2
249
26
26
21
25
2.00
44320603--44320862
27
9.7
27
77
9
221
39
19
10
31
1.84
44320603--44320862
80
3.2
80
89
2
371
39
19
10
31
1.84
44320853--44321201
27
13.0
27
85
1
396
37
17
18
26
1.93
44320736--44321200
54
8.7
54
78
7
376
38
17
16
27
1.91
44320853--44321185
81
4.1
81
85
1
436
37
17
18
26
1.93
44322948--44323119
93
1.8
93
96
0
317
27
30
22
20
1.98
44322940--44323115
46
3.8
46
81
10
232
28
29
21
20
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44325016--44325103
29
3.0
29
80
8
97
56
15
17
10
1.66
44325016--44325094
15
5.4
15
77
10
83
58
13
17
10
1.63
44325027--44325103
15
5.2
15
75
9
77
55
15
16
11
1.68
44328021--44328192
93
1.8
93
96
0
317
27
30
22
20
1.98
44328013--44328188
46
3.8
46
81
10
232
28
29
21
20
1.98
44329913--44329970
17
3.6
17
73
20
52
51
0
17
31
1.45
44331761--44331843
29
2.9
29
85
0
103
27
30
15
26
1.96
44333336--44333368
16
2.1
16
88
11
50
18
6
27
48
1.71
44338658--44338864
40
5.2
40
84
3
224
25
20
26
27
1.99
44342366--44342467
29
3.6
29
81
1
116
26
27
17
28
1.98
44342357--44342467
58
1.9
57
85
1
150
27
27
16
28
1.97
44342699--44342729
8
3.9
8
95
0
53
12
25
22
38
1.90
44345155--44345250
38
2.5
38
77
9
106
35
19
15
29
1.93
44346157--44346220
31
2.1
31
90
0
101
23
25
15
35
1.94
44346412--44346531
24
5.0
24
87
6
154
26
24
20
28
1.99
44346412--44346531
47
2.5
48
86
6
154
26
24
20
28
1.99
44346581--44346640
20
3.0
20
92
0
102
31
21
10
36
1.87
44346581--44346635
11
5.4
11
70
16
55
30
20
10
38
1.87
44346683--44346730
25
1.9
25
86
0
69
25
16
25
33
1.96
44354943--44355009
28
2.5
28
92
7
113
17
10
26
44
1.81
44356801--44356844
19
2.4
18
85
7
54
40
9
0
50
1.34
44359198--44359265
28
2.5
28
92
4
113
19
10
26
44
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44361053--44361096
19
2.4
18
85
7
54
40
9
0
50
1.34
44361493--44361556
31
2.1
31
90
0
101
23
25
15
35
1.94
44361748--44361867
24
5.0
24
85
7
154
27
22
20
29
1.99
44361918--44361977
20
3.0
20
95
0
111
33
20
10
36
1.86
44361918--44361972
11
5.4
11
70
16
55
30
20
10
38
1.87
44362020--44362067
25
1.9
25
86
0
69
25
16
25
33
1.96
44364375--44364544
60
2.9
57
81
6
173
29
16
12
41
1.85
44364375--44364544
57
2.9
59
81
6
188
29
16
12
41
1.85
44366598--44366633
18
1.9
19
88
5
56
22
44
25
8
1.80
44367982--44368031
24
2.1
24
100
0
100
50
0
4
46
1.20
44370501--44370672
93
1.8
93
92
0
290
27
28
20
22
1.99
44370493--44370668
46
3.8
46
79
10
196
28
27
20
22
1.99
44374546--44374594
26
1.9
26
87
4
73
69
0
14
16
1.19
44374544--44374603
25
2.4
23
79
15
66
70
0
15
15
1.18
44374654--44374732
7
11.3
7
74
12
56
79
11
2
6
1.00
44374659--44374688
9
3.4
9
95
4
53
83
10
0
6
0.81
44374649--44374738
13
7.2
13
78
15
66
78
10
3
7
1.05
44374639--44374814
6
29.3
6
73
15
64
74
5
5
14
1.18
44374654--44374733
20
3.8
20
75
12
56
78
11
3
6
1.05
44374678--44374750
12
5.8
12
84
9
74
75
8
6
9
1.19
44374729--44374774
12
3.8
12
91
0
74
67
0
15
17
1.24
44374729--44374774
18
2.6
18
92
0
74
67
0
15
17
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44374777--44374808
11
3.0
11
95
4
57
75
0
0
25
0.81
44377083--44377401
29
11.0
29
76
4
293
39
13
25
21
1.90
44377080--44377402
87
3.7
87
88
1
450
38
13
25
21
1.91
44377080--44377402
58
5.6
58
78
2
326
38
13
25
21
1.91
44385386--44385445
31
1.9
31
100
0
120
30
15
18
36
1.91
44394443--44394482
20
2.0
20
90
5
62
60
0
30
10
1.30
44396899--44396979
27
3.0
27
80
5
83
38
18
8
34
1.82
44396908--44397007
27
3.7
28
77
9
100
39
21
9
31
1.84
44396908--44397014
54
2.0
54
81
7
128
37
21
9
31
1.85
44397010--44397294
27
10.6
27
83
3
290
28
22
8
41
1.82
44397003--44397276
81
3.4
81
88
5
360
27
24
8
40
1.82
44397272--44397492
27
8.1
27
78
6
187
40
19
8
32
1.81
44397272--44397438
80
2.1
80
83
5
203
39
20
7
31
1.81
44397449--44397500
27
1.9
27
88
7
79
40
11
11
36
1.78
44397554--44397618
27
2.4
27
84
5
87
35
20
24
20
1.96
44398776--44398823
25
2.0
24
83
4
60
31
25
18
25
1.98
44398862--44398918
9
5.9
9
73
15
51
35
8
21
35
1.84
44398860--44398930
20
3.5
20
94
0
124
35
11
21
32
1.89
44398871--44398925
11
5.4
11
70
16
55
36
12
20
30
1.90
44398976--44399191
23
9.2
24
90
4
334
29
22
20
27
1.98
44398976--44399191
47
4.6
47
89
4
312
29
22
20
27
1.98
44399331--44399422
42
2.2
42
86
3
123
27
10
21
40
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44400892--44400954
3
21.0
3
100
0
126
33
0
0
66
0.92
44401726--44401784
18
3.0
20
82
9
68
62
1
27
8
1.33
44403493--44403561
31
2.2
31
82
10
79
23
27
21
27
1.99
44409579--44409617
20
2.0
20
85
10
53
35
20
0
43
1.52
44414131--44414162
16
2.0
16
93
0
55
53
0
6
40
1.26
44421079--44421254
46
3.8
46
81
10
232
20
21
29
28
1.98
44421075--44421246
93
1.8
93
96
0
317
20
22
30
27
1.98
44424202--44424270
15
4.6
15
83
0
84
11
17
13
57
1.64
44424193--44424280
30
3.0
30
81
8
99
10
17
15
56
1.66
44426665--44426840
46
3.8
46
81
10
232
20
21
29
28
1.98
44426661--44426832
93
1.8
93
96
0
317
20
22
30
27
1.98
44429099--44429137
13
3.1
12
85
10
51
69
2
12
15
1.30
44437468--44437802
144
2.3
144
87
3
460
36
26
17
19
1.94
44437468--44437803
48
7.0
48
83
3
408
36
26
17
19
1.94
44441236--44441292
22
2.6
22
94
0
105
29
33
24
12
1.92
44443075--44443151
29
2.7
29
91
0
118
27
31
18
23
1.97
44443041--44443151
58
1.9
58
85
1
152
27
29
16
26
1.97
44443375--44443442
16
4.3
16
88
1
102
7
19
25
48
1.74
44443375--44443442
8
8.6
8
81
12
70
7
19
25
48
1.74
44443374--44443442
32
2.2
31
92
5
120
7
20
24
47
1.75
44443383--44443441
24
2.5
24
88
5
93
8
20
23
47
1.77
44444650--44444682
16
2.1
16
94
0
57
18
3
27
51
1.60
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44453942--44454031
29
3.1
29
80
6
119
26
28
16
27
1.97
44454255--44454313
8
7.4
8
81
7
50
10
20
20
49
1.77
44454255--44454313
24
2.5
24
85
0
82
10
20
20
49
1.77
44454263--44454307
16
2.8
16
83
6
56
13
20
20
46
1.83
44455522--44455553
16
2.0
16
100
0
64
18
6
25
50
1.70
44456728--44456776
25
2.0
25
83
0
62
42
14
6
36
1.70
44460668--44460701
17
1.9
18
88
5
52
61
14
5
17
1.52
44467615--44467655
18
2.2
18
86
4
55
56
14
4
24
1.58
44476163--44476207
23
2.0
22
87
12
65
44
17
13
24
1.85
44476163--44476207
22
2.0
23
87
12
67
44
17
13
24
1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292