genome.fa.s9.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  105  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32134856--32135076	27	8.2	27	84	0	271	38	7	22	31	1.81
32139423--32139466	7	6.7	7	92	7	67	15	27	0	56	1.40
32142674--32142821	40	3.8	40	79	7	153	27	23	25	22	2.00
32142674--32142821	80	1.9	76	84	5	197	27	23	25	22	2.00
32143508--32143537	13	2.3	13	100	0	60	46	16	6	30	1.73
32150564--32150711	40	3.8	38	77	12	149	26	23	27	22	1.99
32158554--32158703	40	3.8	40	77	12	132	26	24	26	22	2.00
32158593--32158719	40	3.2	40	77	4	132	24	24	28	22	2.00
32168849--32168918	35	2.0	35	100	0	140	25	31	11	31	1.91
32170062--32170180	27	4.4	27	84	0	148	27	24	7	40	1.82
32170212--32170341	27	4.9	27	77	8	140	40	20	9	30	1.84
32170212--32170336	54	2.3	53	80	9	155	40	21	8	28	1.83
32170212--32170360	80	1.9	81	84	4	203	42	20	8	28	1.82
32170373--32170424	27	1.9	27	84	7	70	40	11	11	36	1.78
32170465--32170542	27	2.9	27	75	11	88	39	19	17	23	1.92
32171350--32171421	25	2.9	25	89	0	108	27	26	20	25	1.99
32171377--32171448	25	3.0	24	78	13	67	29	22	19	29	1.98
32171673--32171750	29	2.6	29	81	8	84	29	21	26	21	1.99
32173954--32174010	27	2.1	27	83	0	69	29	15	31	22	1.95
32173970--32174032	27	2.3	27	83	0	81	34	17	28	19	1.94
32177403--32177853	228	2.0	228	88	1	681	23	30	20	25	1.98
32178567--32178904	47	7.2	46	75	11	240	23	30	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32178567--32178884	141	2.2	140	80	6	338	23	30	19	26	1.98
32178569--32178905	94	3.6	93	76	11	319	23	30	18	27	1.98
32178905--32179104	47	4.3	46	78	12	212	23	29	20	27	1.98
32178803--32179029	124	1.8	125	87	4	343	22	29	21	26	1.99
32178928--32179104	94	1.9	93	83	8	234	23	29	20	26	1.98
32178710--32179104	218	1.8	218	92	1	666	23	30	19	26	1.98
32188867--32188921	19	2.8	20	78	13	60	34	1	7	56	1.38
32189025--32189078	23	2.3	23	81	6	65	38	20	9	31	1.84
32193699--32193734	15	2.4	15	90	9	56	52	0	16	30	1.44
32194129--32194168	12	3.3	12	100	0	80	37	7	15	40	1.75
32195374--32195412	21	1.9	20	89	5	60	28	7	23	41	1.82
32196164--32196243	27	3.2	26	62	20	62	17	18	30	33	1.94
32200655--32200799	37	3.9	37	94	0	245	24	33	18	23	1.97
32200844--32201808	48	20.1	48	92	0	1606	30	26	6	36	1.82
32204363--32204402	7	5.7	7	81	0	53	62	12	0	25	1.30
32204763--32204858	46	2.0	46	94	4	165	34	2	7	56	1.39
32209648--32209703	29	1.9	30	85	3	78	19	44	1	33	1.61
32209887--32209983	36	2.7	35	78	12	108	35	8	2	54	1.42
32210221--32210258	19	2.0	19	89	0	58	34	7	23	34	1.84
32212393--32212489	36	2.7	37	75	4	108	38	12	14	35	1.84
32212412--32212469	18	3.2	19	80	11	68	34	13	17	34	1.89
32212460--32212590	18	7.3	18	74	10	106	35	12	14	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32212460--32212675	36	5.8	36	68	16	125	35	12	15	36	1.86
32212529--32212576	19	2.7	18	87	6	62	33	12	12	41	1.80
32212460--32212590	54	2.4	54	80	7	149	35	12	14	38	1.84
32212634--32212675	18	2.3	18	87	0	57	38	11	16	33	1.86
32213548--32213762	46	4.7	43	73	14	137	28	18	28	24	1.98
32217633--32217702	27	2.5	28	88	2	106	31	25	14	28	1.95
32225707--32225776	27	2.5	28	88	2	106	31	25	14	28	1.95
32240453--32240562	40	2.8	40	85	10	138	23	26	28	21	1.99
32240450--32240578	39	3.2	40	80	6	156	23	24	27	24	2.00
32242700--32242886	40	4.7	40	81	2	187	29	23	25	21	1.99
32242700--32242851	80	1.9	80	86	0	214	27	23	26	23	2.00
32248024--32248052	15	2.0	15	93	6	51	68	0	0	31	0.89
32253990--32254075	43	2.0	43	97	0	163	38	12	13	34	1.84
32254682--32254820	48	2.9	48	92	0	224	28	18	28	24	1.98
32254831--32254948	42	2.8	42	85	0	137	27	15	24	32	1.95
32254869--32255035	90	1.9	90	82	2	210	29	18	25	25	1.98
32262554--32262689	48	2.8	48	85	2	157	25	16	31	27	1.96
32265299--32265483	40	4.6	39	85	4	217	28	22	25	23	2.00
32265298--32265504	80	2.6	80	83	4	247	26	22	26	25	2.00
32265297--32265504	40	5.2	39	83	5	211	26	22	25	25	2.00
32268584--32268781	71	2.8	70	92	3	294	33	17	28	20	1.95
32268650--32268767	41	3.1	41	60	28	98	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32268618--32268781	71	2.3	71	100	0	328	35	17	28	18	1.94
32283172--32283202	12	2.6	12	100	0	62	32	9	6	51	1.60
32284975--32285057	37	2.3	37	91	2	132	44	2	10	42	1.52
32285979--32286047	33	2.0	33	83	11	84	55	2	8	33	1.46
32289766--32289867	30	3.3	30	69	24	93	63	6	0	29	1.20
32291968--32292168	43	4.7	43	93	0	348	23	18	33	24	1.97
32291968--32292191	86	2.6	86	85	6	312	24	19	30	25	1.98
32292243--32292308	30	2.2	31	83	2	80	59	18	4	18	1.55
32292244--32292321	32	2.5	30	79	6	75	61	19	3	15	1.48
32292568--32292613	21	2.2	21	84	0	56	2	50	19	28	1.60
32298268--32298493	9	24.6	9	75	9	143	38	0	12	47	1.48
32298268--32298493	18	12.3	18	76	9	161	38	0	12	47	1.48
32298321--32298493	27	6.2	27	77	10	159	38	1	13	46	1.50
32298244--32298465	114	1.9	114	86	3	313	38	0	12	47	1.48
32298597--32298652	15	3.8	15	78	21	73	53	0	0	46	1.00
32298828--32298895	24	2.8	24	86	8	102	45	7	19	27	1.76
32302367--32302471	37	2.8	36	85	7	120	21	30	24	22	1.99
32310448--32310559	40	2.8	40	88	0	161	21	28	23	26	1.99
32313686--32313762	38	2.1	37	90	2	118	32	23	10	33	1.89
32318233--32318305	29	2.5	29	95	0	128	38	15	23	23	1.92
32322758--32322794	18	2.1	18	100	0	74	35	5	10	48	1.61
32326096--32326263	40	4.2	40	83	4	187	25	27	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32326082--32326263	80	2.3	80	82	2	215	25	26	21	26	1.99
32330025--32330055	13	2.4	13	94	0	53	45	3	0	51	1.17
32335796--32335822	14	1.9	14	100	0	54	37	14	25	22	1.93
32348813--32348989	86	2.1	86	98	0	345	38	17	14	29	1.89
32351461--32351510	17	2.9	17	79	5	57	40	22	18	20	1.92
32371038--32371241	53	3.8	53	74	5	131	38	18	22	20	1.94
32381029--32381098	27	2.5	28	88	2	106	28	14	25	31	1.95
32381029--32381110	27	3.0	27	80	8	103	29	13	23	34	1.93
32389100--32389169	27	2.5	28	88	2	106	28	14	25	31	1.95
32389100--32389181	27	3.0	27	80	8	103	29	13	23	34	1.93
32391294--32391434	39	3.6	39	83	5	135	29	22	26	21	1.99
32391335--32391442	38	2.8	37	87	6	144	25	23	27	23	2.00
32399387--32399498	40	2.8	40	86	5	154	26	23	28	21	1.99
32399341--32399528	40	4.8	38	76	9	146	27	22	27	22	1.99
32404037--32404200	40	4.1	40	81	4	170	25	28	21	24	1.99
32404023--32404200	80	2.2	80	81	3	198	24	28	21	25	1.99
32408899--32409068	46	3.7	46	77	16	201	29	28	20	21	1.98
32408904--32409071	92	1.8	91	93	3	293	28	29	20	21	1.98
32408899--32409079	44	4.0	44	75	16	181	29	28	19	22	1.98
32416420--32416589	46	3.7	46	77	16	192	28	28	20	21	1.98
32416466--32416608	46	3.1	44	74	17	132	29	28	19	22	1.98
32419651--32419758	26	4.2	26	90	0	171	37	23	6	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32420713--32420783	13	5.5	13	86	0	79	38	25	8	28	1.85
32420713--32420783	26	2.7	26	82	4	90	38	25	8	28	1.85
32420707--32420783	39	2.0	39	87	5	111	35	25	7	31	1.85
32421150--32421368	49	4.4	50	83	2	262	26	18	26	28	1.98
32421343--32421394	26	2.0	26	92	0	86	30	11	23	34	1.90
32424184--32424218	18	1.9	18	100	0	70	45	22	2	28	1.67
32424374--32424473	23	4.3	23	72	7	76	44	34	5	17	1.70
32424385--32424478	47	2.0	49	85	4	129	43	32	4	19	1.70
32424567--32424597	15	2.1	15	100	0	62	22	25	19	32	1.97
32424720--32424861	6	23.7	6	85	8	114	82	9	4	3	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292