genome.fa.s9.2.7.7.80.10.50.1000.221.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  221  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64737634--64737686	21	2.4	21	84	15	63	28	11	0	60	1.31
64741795--64741825	12	2.6	12	94	0	53	22	25	9	41	1.84
64762075--64762208	71	1.9	71	89	3	207	31	16	22	29	1.96
64761984--64762359	160	2.4	157	95	1	662	28	16	22	32	1.96
64762388--64762756	203	1.8	201	86	7	541	26	16	18	37	1.93
64762511--64762667	58	2.8	56	89	6	246	29	15	17	37	1.90
64762721--64762929	73	2.9	72	80	6	251	25	15	24	33	1.95
64762857--64763119	136	1.9	137	87	3	388	26	17	20	34	1.95
64764783--64764842	26	2.3	27	80	13	72	35	0	3	61	1.12
64764797--64764852	26	2.0	26	83	10	67	33	1	1	62	1.16
64764965--64765017	21	2.4	21	84	15	63	28	11	0	60	1.31
64768460--64768498	18	2.1	19	90	4	62	48	10	0	41	1.37
64784160--64784237	37	2.1	36	90	6	122	48	3	3	43	1.39
64784263--64784336	25	3.0	25	82	3	89	66	2	31	0	1.06
64792057--64792096	18	2.1	18	86	9	53	80	0	5	15	0.88
64793827--64793946	59	2.0	59	98	0	231	34	27	14	24	1.94
64804016--64804060	19	2.4	19	81	3	56	20	8	6	64	1.44
64804835--64805214	132	2.9	129	81	5	422	28	19	18	33	1.95
64804868--64805237	133	2.8	131	81	7	417	27	20	18	34	1.96
64807096--64807123	14	2.0	14	100	0	56	71	0	7	21	1.09
64808878--64808909	16	2.0	16	93	0	55	28	0	3	68	1.04
64810798--64810860	29	2.1	32	85	8	87	49	0	1	49	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64813916--64813961	21	2.2	21	84	7	58	45	2	0	52	1.13
64816282--64816351	32	2.2	30	82	12	79	27	20	5	47	1.72
64816563--64816608	24	2.0	23	82	4	56	26	4	4	65	1.30
64817404--64817468	22	2.8	23	81	13	71	69	4	0	26	1.08
64817422--64817479	21	2.8	21	85	10	75	70	6	0	22	1.10
64820605--64820697	44	2.1	45	95	2	170	48	13	3	34	1.59
64825541--64825601	21	2.8	23	85	14	94	34	27	24	13	1.93
64825527--64825613	21	4.0	23	79	10	83	37	24	21	16	1.93
64825984--64826040	15	3.8	15	88	6	89	50	12	0	36	1.40
64825987--64826044	29	2.1	27	93	6	98	53	12	0	34	1.38
64832172--64832196	2	12.5	2	100	0	50	48	0	0	52	1.00
64841834--64842110	41	6.8	41	93	0	457	33	19	28	18	1.96
64842369--64842414	15	3.1	15	84	3	58	30	2	17	50	1.58
64842369--64842415	14	3.3	14	82	5	58	31	2	17	48	1.58
64842834--64842880	19	2.5	19	86	6	69	68	0	6	25	1.13
64842871--64842912	15	3.0	13	89	6	57	71	2	2	23	1.10
64845664--64845706	22	1.9	23	85	4	61	58	4	0	37	1.19
64845756--64845915	85	1.9	85	93	0	275	28	16	26	28	1.97
64845755--64845915	43	3.8	43	82	1	207	28	16	26	28	1.97
64847853--64848030	49	3.6	49	93	0	302	25	17	26	29	1.97
64849452--64849501	26	1.9	26	91	0	82	56	2	14	28	1.49
64854148--64854196	23	2.1	23	84	0	62	26	4	2	67	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64854333--64854555	89	2.5	88	80	2	275	37	11	26	24	1.89
64858208--64858859	216	3.0	216	96	0	1207	26	13	19	39	1.89
64861002--64861090	46	2.0	45	91	4	144	32	13	25	28	1.94
64860995--64861128	46	3.0	45	81	4	135	35	14	23	26	1.93
64864994--64865045	2	26.0	2	76	7	52	51	5	1	40	1.37
64865279--64865328	26	1.9	26	91	0	82	60	6	0	34	1.21
64865381--64865443	26	2.4	26	74	12	65	57	7	1	33	1.37
64865353--64865427	40	1.9	40	83	5	100	61	4	4	30	1.33
64866745--64866881	69	2.0	69	98	0	265	16	2	38	41	1.64
64867211--64867263	21	2.5	21	84	0	70	24	33	13	28	1.93
64867381--64868025	176	3.7	171	84	7	774	35	19	16	28	1.94
64867384--64867863	88	5.5	88	89	5	613	34	19	17	28	1.94
64876440--64876539	28	3.6	28	78	10	98	18	23	24	35	1.96
64876440--64876552	27	4.1	28	79	13	110	16	23	23	36	1.94
64876440--64876552	55	2.1	54	85	5	147	16	23	23	36	1.94
64876558--64877161	302	2.0	302	98	0	1172	21	17	26	34	1.95
64881057--64881113	24	2.4	24	78	0	60	68	3	3	24	1.21
64881411--64881505	26	3.7	26	75	8	79	54	5	8	31	1.53
64881729--64881819	23	3.6	25	80	17	100	62	4	1	31	1.22
64881763--64881817	25	2.5	20	88	11	56	63	3	0	32	1.12
64881752--64881828	23	3.3	23	82	13	88	61	3	1	33	1.23
64881788--64881835	17	2.9	16	78	6	51	54	6	2	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64881934--64882030	3	32.3	3	89	4	151	63	2	1	32	1.12
64882713--64882792	31	2.5	31	85	2	97	25	27	16	31	1.96
64882999--64883150	24	6.4	24	93	3	245	27	21	21	29	1.98
64882999--64883150	47	3.2	48	91	3	245	27	21	21	29	1.98
64882999--64883150	71	2.1	71	93	1	259	27	21	21	29	1.98
64883199--64883265	20	3.3	20	91	0	107	32	19	11	35	1.88
64883302--64883349	25	1.9	25	86	0	69	25	16	25	33	1.96
64884506--64884589	27	3.1	27	86	3	107	21	25	21	32	1.98
64884651--64884758	27	3.9	27	75	13	94	31	9	18	40	1.82
64884734--64884818	27	3.1	27	81	6	118	31	8	20	40	1.82
64884839--64884971	27	4.9	27	86	3	162	41	9	21	27	1.84
64884966--64885017	27	1.9	27	96	0	95	38	3	30	26	1.74
64884928--64885009	38	2.2	38	81	0	92	39	8	30	21	1.84
64884976--64885033	27	2.1	27	81	12	66	37	5	27	29	1.78
64885012--64885101	27	3.3	26	83	6	108	32	10	17	40	1.83
64885012--64885116	27	3.9	27	79	9	90	34	9	17	39	1.82
64886097--64886134	3	12.3	3	86	10	51	63	2	0	34	1.09
64886166--64886325	25	6.5	25	70	11	100	56	4	5	33	1.42
64886318--64886346	14	2.0	15	93	6	51	68	0	0	31	0.89
64886319--64886351	16	2.0	17	88	5	50	69	3	0	27	1.03
64886323--64886385	26	2.5	26	81	2	83	57	7	1	33	1.37
64887683--64887835	70	2.2	70	96	1	279	14	3	39	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64897152--64897260	50	2.1	52	88	6	161	31	11	13	43	1.81
64897408--64897480	9	8.6	9	68	25	52	24	1	19	54	1.52
64906982--64907027	12	3.8	12	85	11	58	63	0	4	32	1.14
64909770--64909827	20	2.9	19	82	12	57	67	6	1	24	1.25
64911307--64911338	2	16.0	2	100	0	64	50	0	0	50	1.00
64913427--64913534	44	2.4	44	87	3	144	29	23	13	33	1.93
64919379--64919486	44	2.4	44	87	3	144	29	23	13	33	1.93
64922359--64922399	21	1.9	22	85	5	57	39	0	7	53	1.29
64922492--64922532	5	7.6	5	84	15	55	39	0	0	60	0.96
64922500--64922533	12	2.8	12	95	4	59	41	0	0	58	0.98
64924254--64924280	6	4.5	6	100	0	54	18	18	14	48	1.82
64924260--64924368	45	2.4	45	90	0	173	18	17	20	44	1.88
64924237--64924369	45	2.8	49	79	12	150	18	19	21	41	1.91
64924550--64924796	18	13.3	18	73	9	147	36	11	14	36	1.83
64924532--64924685	54	2.8	54	81	2	157	38	11	13	37	1.80
64924532--64924716	72	2.6	73	83	3	250	37	11	13	37	1.81
64924578--64924796	54	3.9	55	74	10	165	36	11	14	36	1.83
64925150--64925198	24	2.0	24	100	0	98	40	0	20	38	1.53
64928756--64928848	46	2.0	46	95	0	168	33	26	5	34	1.79
64930209--64930250	20	2.0	22	86	9	61	54	0	0	45	0.99
64932325--64932367	17	2.6	16	89	10	68	60	0	2	37	1.10
64936589--64936651	25	2.5	26	80	10	69	57	6	1	34	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64936855--64936897	15	2.9	14	80	13	50	41	2	0	55	1.12
64940277--64940316	18	2.4	16	83	8	53	35	0	0	65	0.93
64941171--64941295	62	2.0	62	96	0	232	36	21	23	19	1.95
64946761--64946863	41	2.5	41	88	3	145	38	18	21	21	1.93
64947728--64947896	77	2.2	78	88	4	243	24	33	3	39	1.72
64947728--64947915	77	2.4	76	83	8	229	23	35	3	37	1.73
64947947--64948021	25	3.0	25	80	7	80	10	38	24	26	1.88
64959978--64960020	21	2.0	22	90	4	70	69	0	0	30	0.88
64960024--64960132	30	3.7	30	82	10	127	29	21	1	47	1.61
64960017--64960145	30	4.4	30	80	11	108	33	18	1	46	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292