genome.fa.s9.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  159  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47326863--47326913	21	2.4	21	90	6	77	37	0	5	56	1.23
47327001--47327040	17	2.3	18	87	8	57	27	0	2	70	1.01
47326998--47327066	25	2.7	26	76	13	72	27	2	4	65	1.26
47326998--47327084	26	3.4	26	73	7	81	25	3	5	65	1.31
47334978--47335103	44	2.9	43	81	10	116	34	26	17	21	1.95
47346844--47347361	259	2.0	258	91	1	849	31	20	11	36	1.88
47350378--47350430	20	2.7	20	78	0	61	33	16	18	30	1.94
47364188--47364214	8	3.4	8	100	0	54	25	0	37	37	1.57
47367179--47367206	1	28.0	1	100	0	56	0	0	0	100	0.00
47367363--47367470	53	2.1	53	92	5	184	20	13	9	56	1.65
47369069--47369100	2	16.0	2	100	0	64	50	0	0	50	1.00
47371047--47371112	34	2.0	33	84	3	87	24	21	0	54	1.45
47371060--47371123	33	1.9	34	87	9	96	20	21	0	57	1.40
47372672--47372709	2	19.0	2	100	0	76	50	0	0	50	1.00
47376662--47376801	73	1.9	73	91	2	228	27	4	17	50	1.65
47379994--47380027	17	1.9	18	88	5	52	61	8	23	5	1.47
47383778--47383811	2	17.0	2	100	0	68	50	0	0	50	1.00
47384415--47384441	12	2.2	12	100	0	54	7	14	37	40	1.74
47387111--47387142	15	2.1	16	94	5	57	59	0	21	18	1.38
47387110--47387161	20	2.6	20	84	6	70	53	0	23	23	1.46
47391886--47391958	37	2.0	37	97	0	137	28	10	23	36	1.89
47392977--47393084	37	2.9	36	79	16	100	39	3	3	52	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47395831--47395869	18	2.0	20	85	9	55	61	7	0	30	1.24
47395917--47395970	9	5.8	9	80	8	63	62	1	3	31	1.23
47395888--47395970	38	2.2	39	84	2	105	60	3	3	32	1.31
47395905--47395971	19	3.5	19	76	8	73	61	5	2	29	1.35
47395908--47395980	29	2.5	29	73	8	69	63	6	2	27	1.34
47396356--47396555	10	21.0	9	69	16	66	36	2	3	58	1.27
47396356--47396534	19	9.4	19	68	18	70	36	2	3	56	1.30
47396351--47396446	45	2.1	43	78	16	97	34	3	2	60	1.24
47396531--47396561	10	3.1	10	100	0	62	29	0	0	70	0.87
47398417--47398447	4	7.8	4	100	0	62	25	0	0	74	0.82
47400248--47400282	18	2.0	17	94	5	61	57	0	0	42	0.99
47410894--47410936	20	2.0	22	91	8	72	48	0	0	51	1.00
47410908--47411005	29	3.2	29	77	7	106	58	0	1	40	1.05
47410923--47411005	20	4.1	20	71	20	73	59	0	1	39	1.05
47410914--47410993	9	8.3	9	70	17	54	57	0	1	41	1.07
47411381--47411412	2	16.0	2	100	0	64	50	0	0	50	1.00
47411441--47411476	2	18.5	2	94	5	65	50	0	0	50	1.00
47413598--47413653	9	6.2	9	79	6	60	53	0	1	44	1.11
47413605--47413670	9	6.5	10	73	15	55	54	0	1	43	1.09
47413597--47413654	28	2.1	27	90	3	89	51	0	1	46	1.11
47413603--47413648	19	2.4	19	88	3	65	56	0	2	41	1.11
47413869--47413902	18	1.9	18	88	5	52	38	2	2	55	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47417490--47417543	26	2.1	26	82	6	65	48	1	0	50	1.11
47418369--47418395	3	9.0	3	100	0	54	66	33	0	0	0.92
47423587--47423629	18	2.4	18	80	3	52	41	0	4	53	1.21
47423583--47423641	22	2.6	23	72	8	57	44	0	3	52	1.17
47423607--47423896	142	2.0	141	93	4	492	50	11	1	37	1.47
47423884--47423971	37	2.2	41	84	7	112	39	2	6	51	1.41
47433915--47433989	26	2.9	26	85	0	96	38	10	17	33	1.84
47444621--47444693	29	2.5	29	86	4	94	26	16	30	27	1.97
47452383--47452456	29	2.6	29	89	4	105	25	16	32	25	1.96
47459411--47459443	3	11.0	3	100	0	66	33	0	33	33	1.58
47474113--47474289	40	4.4	40	83	4	216	23	22	27	26	1.99
47474517--47474558	22	1.9	22	85	9	59	33	9	14	42	1.78
47482160--47482308	40	3.8	40	84	6	178	24	20	26	28	1.99
47482138--47482308	80	2.2	79	84	5	211	25	20	26	28	1.99
47482535--47482576	22	1.9	22	85	9	59	33	9	14	42	1.78
47489058--47489233	46	3.8	45	79	12	205	20	20	29	29	1.98
47489055--47489226	93	1.8	93	94	0	308	20	20	29	28	1.98
47492858--47492908	22	2.3	21	80	9	57	45	1	1	50	1.24
47493303--47493512	42	5.0	42	80	8	185	30	18	22	29	1.97
47497037--47497678	240	2.7	238	85	6	778	44	11	11	32	1.76
47498926--47499029	51	2.1	49	85	3	136	44	8	18	28	1.79
47499009--47499033	13	1.9	13	100	0	50	68	0	16	16	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47499284--47499359	37	2.1	37	100	0	152	32	13	23	30	1.93
47500935--47501001	31	2.1	33	81	10	77	43	7	8	40	1.64
47507264--47507322	26	2.3	26	90	0	91	37	11	16	33	1.86
47518680--47518735	2	28.0	2	92	0	94	48	1	0	50	1.11
47519098--47519208	27	4.0	27	72	18	84	57	4	0	37	1.19
47521785--47521867	41	2.0	41	92	0	139	18	18	7	56	1.63
47525030--47525173	40	3.6	40	81	3	121	28	22	27	21	1.99
47525066--47525196	40	3.3	40	81	2	165	24	22	28	25	1.99
47529293--47529352	30	2.0	30	90	0	93	28	23	6	41	1.79
47543295--47543354	30	2.0	30	90	0	93	28	23	6	41	1.79
47548341--47548365	11	2.3	11	100	0	50	40	8	12	40	1.72
47549582--47549697	57	2.0	57	89	0	178	37	20	17	25	1.94
47551325--47551400	34	2.2	34	83	2	89	38	22	15	23	1.93
47551234--47551507	108	2.6	107	84	1	352	35	21	18	24	1.96
47551342--47551507	34	4.7	34	67	14	93	36	21	18	24	1.95
47560238--47560445	40	5.2	39	84	1	209	25	25	22	26	2.00
47560238--47560443	80	2.6	81	84	3	247	24	26	22	26	2.00
47568223--47568430	40	5.2	39	84	1	209	25	25	22	26	2.00
47568223--47568428	80	2.6	81	84	3	247	24	26	22	26	2.00
47572711--47572785	38	2.0	38	100	0	150	40	8	10	41	1.69
47573665--47573700	18	2.0	18	88	0	54	55	5	13	25	1.60
47573817--47573875	31	1.9	31	86	6	84	37	15	16	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47574954--47574994	2	21.5	2	90	9	68	51	0	0	48	1.00
47574954--47574994	17	2.4	17	91	0	73	51	0	0	48	1.00
47576989--47577049	30	2.0	30	83	0	77	31	22	8	37	1.84
47582277--47582483	40	5.2	39	83	4	209	25	25	22	27	2.00
47582277--47582482	80	2.6	77	83	5	232	25	25	22	26	2.00
47586767--47586841	38	2.0	38	100	0	150	40	8	10	41	1.69
47587724--47587759	18	2.0	18	88	0	54	55	5	13	25	1.60
47587876--47587934	31	1.9	31	86	6	84	37	15	16	30	1.90
47589009--47589041	2	16.5	2	100	0	66	51	0	0	48	1.00
47596310--47596439	40	3.2	40	84	4	174	24	28	23	23	2.00
47611188--47611413	47	4.8	47	83	7	244	22	29	20	27	1.98
47611753--47611810	30	1.9	30	89	0	89	27	24	13	34	1.93
47614645--47614812	43	3.9	43	72	9	137	28	14	24	32	1.95
47616871--47616903	17	1.9	17	88	11	50	51	0	3	45	1.16
47618711--47618820	40	2.8	40	84	2	132	25	28	12	33	1.92
47620412--47620536	62	2.0	62	98	0	241	28	5	19	46	1.72
47628542--47628611	21	3.2	21	68	18	61	21	12	25	40	1.89
47630515--47630543	14	2.1	14	100	0	58	27	6	6	58	1.50
47638002--47638081	39	2.1	39	100	0	160	35	17	2	45	1.62
47647745--47647779	16	2.2	16	100	0	70	71	0	5	22	1.07
47647836--47647863	14	2.0	14	100	0	56	28	35	7	28	1.84
47648352--47648399	22	2.2	22	96	0	87	31	0	10	58	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47648856--47648915	30	2.0	30	96	0	111	31	8	23	36	1.84
47650835--47651100	47	5.7	45	75	9	205	25	26	18	30	1.98
47651885--47651944	26	2.4	24	83	8	75	65	3	0	31	1.09
47651915--47651973	21	2.8	22	85	7	70	69	6	0	23	1.12
47652020--47652052	15	2.1	16	88	11	50	69	0	0	30	0.88
47656668--47657004	48	6.9	48	89	5	523	36	6	26	31	1.81
47656668--47657004	100	3.4	98	93	2	561	36	6	26	31	1.81
47656668--47657004	148	2.3	150	90	4	535	36	6	26	31	1.81
47657153--47657261	36	3.0	36	90	1	173	24	19	28	27	1.98
47658529--47659035	40	12.7	40	87	0	683	23	19	28	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292