genome.fa.s9.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  163  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48550073--48550115	19	2.2	20	87	4	61	46	4	18	30	1.69
48554180--48554264	27	3.4	25	71	17	70	57	3	9	29	1.47
48554551--48554588	17	2.2	17	90	0	58	63	5	0	31	1.17
48554567--48554620	21	2.5	20	80	11	54	61	0	1	37	1.07
48560655--48560682	2	14.0	2	100	0	56	50	0	0	50	1.00
48564041--48564073	12	2.6	13	85	9	50	18	0	3	78	0.87
48564729--48565218	3	161.7	3	69	19	171	31	4	4	60	1.35
48564781--48565120	152	2.2	149	84	5	423	31	3	5	59	1.38
48565380--48565428	22	2.3	22	82	3	64	22	10	8	59	1.56
48565420--48565622	3	68.0	3	73	10	139	30	6	0	62	1.28
48565444--48565512	34	2.0	34	86	5	95	27	7	0	65	1.19
48565637--48565670	12	2.8	12	90	0	50	44	8	2	44	1.50
48577858--48577889	13	2.5	13	94	0	55	18	12	3	65	1.38
48577789--48577966	90	2.0	90	85	2	241	26	16	19	37	1.92
48577871--48578084	76	2.8	77	85	4	306	29	15	19	35	1.93
48577871--48578106	77	3.1	77	83	3	323	28	15	19	36	1.93
48577978--48578247	141	1.9	140	78	6	294	28	15	19	36	1.93
48579312--48579353	14	2.9	15	82	13	52	11	2	4	80	0.95
48579308--48579357	23	2.1	24	82	10	59	14	2	4	80	0.95
48579421--48579453	2	16.5	2	100	0	66	51	0	0	48	1.00
48580177--48580206	2	15.0	2	92	0	51	46	0	3	50	1.18
48580034--48580374	3	112.3	3	79	13	307	32	2	2	62	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48580537--48580570	12	2.8	12	90	0	50	44	8	2	44	1.50
48584971--48585080	26	4.2	26	94	2	177	34	4	24	36	1.76
48586695--48586810	27	4.3	27	82	7	128	18	24	21	36	1.95
48586695--48586810	54	2.1	54	84	3	144	18	24	21	36	1.95
48588854--48588883	14	2.1	14	100	0	60	73	13	0	13	1.10
48589694--48589752	31	1.9	30	82	3	73	44	1	20	33	1.62
48590006--48590031	7	3.7	7	100	0	52	26	30	11	30	1.92
48590413--48590466	15	3.5	16	76	19	53	24	7	1	66	1.27
48590413--48590478	29	2.3	29	79	12	73	22	7	1	68	1.24
48590443--48590480	12	2.9	13	88	7	51	18	10	2	68	1.30
48592321--48592349	14	2.0	15	93	6	51	27	0	20	51	1.47
48593491--48593647	43	3.7	41	71	15	113	25	17	27	29	1.98
48598342--48598449	26	4.2	26	87	2	155	36	23	8	32	1.84
48598342--48598449	52	2.1	52	91	0	171	36	23	8	32	1.84
48610300--48610699	138	2.9	138	78	4	439	31	18	20	30	1.96
48610490--48610576	44	2.0	44	84	8	115	31	14	21	32	1.94
48610533--48610839	94	3.3	94	92	0	488	29	19	19	31	1.96
48610571--48610804	44	5.0	44	66	22	147	30	19	19	30	1.97
48613015--48613079	21	3.2	21	67	20	66	12	24	23	40	1.89
48612997--48613081	39	2.2	39	93	4	145	12	25	24	36	1.92
48612997--48613093	39	2.5	39	89	3	124	13	24	25	36	1.92
48615625--48615693	14	5.0	14	80	16	65	24	7	1	66	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48615629--48615694	29	2.3	29	84	7	89	24	6	1	68	1.21
48615629--48615686	15	3.8	16	79	20	63	24	6	1	67	1.25
48620043--48620068	2	13.0	2	100	0	52	50	0	0	50	1.00
48625880--48626389	132	3.9	132	83	5	595	35	19	18	27	1.95
48629478--48629576	30	3.3	30	88	0	144	26	47	6	20	1.73
48629751--48629803	22	2.5	22	96	3	99	15	3	28	52	1.59
48630074--48630117	15	3.2	15	69	24	51	36	0	0	63	0.95
48630115--48630190	23	3.2	25	76	10	70	35	7	5	51	1.54
48630214--48630279	22	2.9	23	82	6	80	30	6	6	57	1.47
48630219--48630280	24	2.7	23	85	5	81	30	4	6	58	1.44
48630149--48630317	76	2.2	75	78	11	175	32	7	4	55	1.47
48630341--48630396	25	2.3	24	79	14	62	37	16	3	42	1.65
48641446--48641478	17	1.9	17	88	11	50	84	0	15	0	0.61
48642485--48642528	13	3.3	13	87	6	70	13	11	6	68	1.39
48642423--48642692	99	2.7	100	89	2	393	24	18	19	37	1.94
48642697--48643153	75	6.2	73	84	5	550	30	14	19	35	1.92
48642710--48643157	221	2.0	220	92	2	747	30	15	19	34	1.93
48643137--48643171	14	2.5	14	90	0	52	14	14	8	62	1.53
48643228--48643260	14	2.4	14	94	0	57	18	12	6	63	1.48
48643126--48643616	91	5.3	90	76	9	384	26	16	17	39	1.90
48643084--48643416	182	1.8	178	85	5	463	28	17	18	35	1.94
48643329--48643518	102	1.8	103	88	4	294	28	15	16	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48643456--48643683	87	2.6	87	78	4	210	31	14	18	35	1.91
48644298--48644396	30	3.3	30	92	0	162	25	49	6	19	1.71
48644914--48644989	23	3.2	25	76	10	70	35	7	5	51	1.54
48645015--48645081	25	2.9	23	78	10	73	29	5	5	58	1.46
48644948--48645120	78	2.2	77	78	9	172	32	7	4	55	1.48
48645144--48645199	25	2.3	24	79	14	62	37	16	3	42	1.65
48650550--48650608	30	1.9	31	90	10	95	42	23	13	20	1.88
48651092--48651121	5	6.0	5	100	0	60	20	0	0	80	0.72
48651092--48651147	10	5.6	10	77	8	51	25	0	1	73	0.93
48651092--48651174	19	4.2	20	78	9	64	27	1	1	69	1.03
48651092--48651177	20	4.3	20	74	15	63	27	1	1	69	1.03
48651142--48651182	9	4.2	10	79	14	50	29	2	0	68	1.03
48651129--48651183	20	2.8	19	82	17	69	30	1	0	67	1.01
48651204--48651244	13	3.1	13	82	6	55	60	7	0	31	1.24
48656968--48657019	15	3.3	15	80	15	61	19	26	0	53	1.45
48656968--48657007	16	2.5	15	84	11	53	20	27	0	52	1.46
48660594--48660628	17	2.1	17	100	0	70	31	28	5	34	1.81
48660946--48661024	21	3.7	21	84	3	77	41	24	20	13	1.88
48660958--48661005	21	2.3	21	100	0	96	33	29	25	12	1.92
48661398--48661455	15	3.8	15	88	2	89	51	12	0	36	1.39
48662725--48662761	5	7.2	5	96	3	65	56	0	0	43	0.99
48662783--48662811	8	3.6	8	100	0	58	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48670115--48670264	75	2.0	75	94	0	264	37	12	11	39	1.78
48673836--48674167	131	2.6	130	86	2	429	27	17	19	34	1.95
48682309--48682369	26	2.3	27	78	15	74	29	6	1	62	1.30
48682339--48682393	21	2.5	21	83	16	60	34	5	0	60	1.20
48682491--48682540	22	2.3	20	83	10	55	28	4	2	66	1.21
48682458--48682574	26	4.7	25	76	17	75	29	6	3	60	1.39
48686603--48686633	12	2.6	12	100	0	62	58	9	32	0	1.31
48688775--48688931	78	2.0	78	92	2	262	33	23	22	19	1.97
48688908--48689040	45	3.0	45	84	5	155	29	20	22	27	1.98
48696413--48696464	21	2.5	20	77	17	54	36	1	13	48	1.54
48696428--48696465	20	1.9	20	89	10	60	34	0	15	50	1.45
48696760--48696820	31	2.0	31	90	0	95	54	4	13	27	1.59
48709792--48709859	14	4.6	14	70	20	57	4	11	11	72	1.27
48709793--48709880	15	5.8	15	73	11	54	6	10	11	71	1.30
48709791--48709884	46	2.0	46	100	0	188	6	10	10	72	1.28
48711904--48712274	187	2.0	182	94	2	643	28	16	16	38	1.91
48713227--48713267	16	2.5	17	92	8	75	43	4	21	29	1.73
48713459--48713508	20	2.4	22	86	6	68	74	0	2	24	0.93
48713478--48713507	16	1.9	15	93	6	51	73	0	0	26	0.84
48713459--48713520	20	3.0	20	79	9	54	70	1	4	22	1.14
48719998--48720068	34	2.1	34	100	0	142	30	25	5	38	1.79
48720195--48720237	18	2.2	20	84	8	54	44	16	9	30	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48722494--48722612	35	3.4	34	68	13	96	45	14	12	27	1.81
48726069--48726169	50	2.0	50	100	0	202	28	25	19	25	1.99
48726140--48726457	47	6.8	46	71	13	172	22	30	19	27	1.98
48726285--48726457	94	1.8	94	86	4	251	23	30	18	27	1.97
48732798--48732970	43	4.0	43	80	3	188	31	26	15	27	1.95
48739261--48739519	46	5.6	46	88	1	340	19	23	14	42	1.88
48739298--48739527	46	5.0	46	91	0	343	20	25	13	40	1.90
48742242--48742465	70	3.2	70	87	1	288	31	12	18	37	1.87
48743784--48743822	2	19.5	2	100	0	78	51	0	0	48	1.00
48745652--48745790	43	3.3	43	79	7	158	17	12	23	46	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292