genome.fa.s9.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  97  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29701625--29701853	47	4.9	46	77	7	230	28	18	30	22	1.98
29701627--29701856	46	4.9	46	76	7	196	28	19	30	22	1.98
29709647--29709766	29	4.2	29	83	3	136	30	30	12	26	1.93
29709649--29709757	58	1.9	57	86	1	155	29	31	13	25	1.94
29714969--29715051	43	2.0	41	83	9	105	28	18	27	25	1.98
29725444--29725610	40	4.2	40	82	2	185	25	27	21	25	1.99
29725444--29725610	80	2.1	79	83	7	205	25	27	21	25	1.99
29726434--29726479	17	2.5	19	74	22	53	34	23	17	23	1.96
29733438--29733604	40	4.2	40	81	2	176	24	27	22	25	2.00
29733454--29733604	80	1.9	79	83	6	198	23	27	22	25	2.00
29738540--29738583	19	2.4	19	85	7	56	50	0	9	40	1.34
29740372--29740440	28	2.5	28	95	2	122	43	27	10	18	1.82
29747755--29747792	19	2.0	20	85	15	53	36	0	23	39	1.55
29750047--29750076	12	2.5	12	88	0	51	20	50	0	30	1.49
29751813--29752003	56	3.4	56	83	1	231	33	22	13	30	1.93
29761193--29761237	22	2.0	22	86	0	63	24	42	13	20	1.87
29761607--29761667	25	2.4	27	76	13	67	36	3	1	59	1.24
29763639--29764280	27	23.5	27	84	3	784	32	21	21	24	1.98
29765787--29765940	27	5.5	27	82	4	164	31	25	14	28	1.95
29765787--29765940	29	5.5	28	81	6	145	31	25	14	28	1.95
29765787--29765890	55	1.9	55	100	0	208	35	24	13	26	1.92
29767939--29768087	80	1.9	80	81	2	183	22	30	24	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29767980--29768087	40	2.7	38	85	8	128	21	29	25	23	1.99
29776057--29776205	80	1.9	80	81	2	183	22	30	24	22	1.99
29776098--29776205	40	2.7	38	85	8	128	21	29	25	23	1.99
29777999--29778044	2	23.0	2	95	0	83	47	0	2	50	1.13
29785122--29785195	37	2.0	37	94	0	130	39	12	10	37	1.78
29788392--29788547	27	5.8	27	82	11	169	35	22	23	18	1.95
29788392--29788547	54	2.9	54	88	2	226	35	22	23	18	1.95
29788654--29788718	26	2.4	26	82	5	76	30	12	24	32	1.92
29790153--29790234	26	3.2	26	96	0	155	36	26	6	30	1.81
29795398--29795589	47	4.1	47	97	0	357	33	12	29	25	1.92
29795442--29795516	22	3.3	22	67	29	66	30	14	30	24	1.95
29795566--29795606	17	2.5	17	96	4	75	36	9	19	34	1.85
29795519--29795653	64	2.1	64	95	1	245	34	11	25	28	1.90
29795478--29795677	111	1.8	111	95	2	366	34	12	27	26	1.91
29795582--29795717	47	2.9	47	87	3	184	33	11	28	26	1.90
29795599--29795674	22	3.3	22	66	28	59	34	11	28	25	1.91
29795691--29795781	46	2.0	46	86	0	128	32	8	31	26	1.87
29797257--29797630	40	9.4	40	92	0	588	25	19	27	27	1.99
29797257--29797630	199	1.9	200	92	2	637	25	19	27	27	1.99
29797662--29797818	28	5.5	28	72	8	102	23	19	27	29	1.98
29797658--29797824	57	2.9	57	84	0	219	23	18	27	29	1.98
29797690--29797791	29	3.6	29	76	7	100	24	16	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29799943--29799978	2	18.0	2	100	0	72	50	0	0	50	1.00
29801647--29802118	47	10.1	47	94	0	768	33	11	29	26	1.91
29802000--29802075	22	3.3	22	66	28	59	34	11	28	25	1.91
29802092--29802182	46	2.0	46	88	0	137	34	8	30	26	1.87
29810294--29810440	40	3.7	40	86	0	204	36	23	15	24	1.94
29813334--29813433	20	5.0	19	75	9	92	39	14	31	16	1.87
29813334--29813449	40	2.9	40	90	2	171	37	14	31	16	1.89
29815129--29815295	40	4.2	40	78	6	160	25	22	27	24	2.00
29823133--29823299	40	4.2	40	78	6	160	25	22	27	24	2.00
29824659--29824752	40	2.3	40	90	0	143	38	15	32	12	1.86
29828448--29828551	35	3.0	35	84	0	136	37	28	17	16	1.91
29835412--29835448	2	18.5	2	94	0	65	48	2	0	48	1.15
29838095--29838311	46	4.7	46	81	6	208	20	29	21	28	1.98
29838050--29838269	92	2.4	94	77	7	225	20	28	22	29	1.98
29841115--29841321	53	3.8	53	77	3	207	37	19	24	19	1.94
29847051--29848935	942	2.0	942	97	0	3520	32	23	17	25	1.97
29849175--29849303	47	2.7	47	81	5	129	22	27	19	31	1.98
29850840--29850890	14	3.9	14	75	19	56	56	0	0	43	0.99
29850839--29850897	24	2.4	24	81	10	75	59	0	0	40	0.97
29853144--29853218	33	2.3	34	90	4	118	36	8	18	37	1.80
29853177--29853259	41	2.0	41	86	4	114	45	7	13	33	1.71
29856664--29856781	41	3.1	41	60	28	98	32	17	28	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29856632--29856795	71	2.3	71	100	0	328	35	17	28	18	1.94
29864196--29864313	41	3.1	41	60	28	98	32	17	28	21	1.96
29864164--29864327	71	2.3	71	100	0	328	35	17	28	18	1.94
29868621--29868666	21	2.2	21	96	0	83	39	28	8	23	1.84
29868821--29868943	61	2.0	61	93	0	210	37	19	14	28	1.91
29872013--29872202	39	4.9	39	94	1	319	21	31	22	24	1.98
29872013--29872203	77	2.4	78	93	1	330	21	31	22	24	1.98
29875033--29875274	24	10.1	24	96	0	414	36	25	18	20	1.95
29883045--29883287	24	10.1	24	97	0	423	36	25	18	20	1.95
29891370--29891559	77	2.5	77	94	0	335	21	32	22	24	1.98
29891370--29891558	38	4.9	39	94	3	319	21	31	22	24	1.98
29902436--29902538	29	3.6	28	81	5	116	21	16	33	29	1.95
29910416--29910518	29	3.6	28	81	5	116	21	16	33	29	1.95
29916701--29916761	30	2.0	30	83	0	77	39	6	24	29	1.80
29926771--29926878	41	2.6	43	80	7	132	28	20	20	30	1.97
29926719--29926878	85	1.9	86	80	7	193	28	18	21	31	1.97
29930927--29931177	47	5.3	47	93	1	387	31	8	31	29	1.87
29930927--29931177	93	2.7	93	91	2	385	31	8	31	29	1.87
29932992--29933189	27	7.3	27	84	0	225	28	23	7	40	1.82
29933006--29933189	54	3.4	54	90	0	260	29	22	6	40	1.79
29932992--29933189	81	2.4	81	90	0	297	28	23	7	40	1.82
29933188--29933344	27	5.8	27	80	7	149	40	20	10	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29933188--29933371	54	3.4	54	79	5	169	41	20	9	28	1.84
29933221--29933370	81	1.9	81	83	5	196	43	20	7	28	1.79
29933221--29933457	27	8.7	27	76	6	149	40	18	8	31	1.82
29934360--29934429	25	2.8	25	93	0	113	27	25	22	24	2.00
29934360--29934454	25	3.8	25	85	4	111	29	24	22	24	1.99
29935731--29935762	16	2.1	16	94	5	57	31	3	18	46	1.65
29940744--29940795	26	2.0	26	88	7	79	48	15	0	36	1.45
29952709--29952788	34	2.4	34	82	0	106	27	21	25	26	1.99
29959592--29959714	29	4.3	29	89	1	185	26	13	31	29	1.93
29964056--29964339	40	7.1	40	89	2	383	24	21	26	27	1.99
29971603--29971885	40	7.1	40	88	3	374	24	20	26	27	1.99
29973612--29973704	34	2.8	33	76	1	87	29	20	22	27	1.98
29978401--29978644	40	6.1	40	85	2	276	27	25	20	25	1.99
29978613--29978951	123	2.8	123	95	0	588	33	25	11	30	1.91
29981190--29981357	40	4.2	40	84	1	194	23	26	23	26	2.00
29989453--29989496	22	2.0	23	90	4	72	20	2	54	22	1.56
29991242--29991394	43	3.6	43	77	15	149	33	22	17	26	1.96
30001757--30001807	10	4.8	11	73	7	52	39	11	17	31	1.86
30001757--30001807	21	2.4	21	86	0	66	39	11	17	31	1.86
30008007--30008118	27	4.2	26	85	7	143	37	23	24	15	1.93
30008007--30008118	54	2.1	54	88	3	163	37	23	24	15	1.93
30009534--30009580	24	2.0	24	91	0	76	23	38	2	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30015817--30015928	27	4.2	26	85	7	143	37	23	24	15	1.93
30015817--30015928	54	2.1	54	88	3	163	37	23	24	15	1.93
30017331--30017377	24	2.0	24	91	0	76	23	38	2	36	1.67
30025695--30025794	42	2.4	42	77	9	114	32	22	17	29	1.96
30025677--30025798	43	2.8	43	77	11	117	33	22	16	27	1.95
30028092--30028149	30	1.9	30	92	0	98	37	29	18	13	1.90
30032107--30032220	43	2.7	43	88	2	167	26	26	23	23	2.00
30033348--30033446	42	2.3	42	77	5	110	31	22	18	28	1.97
30033329--30033487	43	3.7	43	73	12	148	30	23	18	27	1.98
30033858--30033882	8	3.1	8	100	0	50	24	24	0	52	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292