genome.fa.s9.2.7.7.80.10.50.1000.166.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  166  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49255618--49255703	43	2.0	43	88	0	127	55	6	8	29	1.55
49255763--49255814	21	2.5	21	77	0	59	42	17	5	34	1.73
49255802--49255831	12	2.5	12	94	0	51	36	40	0	23	1.55
49265684--49265855	93	1.8	93	92	2	292	28	30	20	20	1.98
49265676--49265845	46	3.7	45	80	10	209	29	30	20	20	1.97
49265727--49265870	46	3.1	44	70	21	107	29	28	19	22	1.98
49271536--49271564	15	1.9	15	100	0	58	48	0	6	44	1.29
49274694--49274852	27	5.9	27	82	10	182	33	20	25	20	1.97
49274712--49274855	54	2.7	54	94	2	245	34	22	25	18	1.96
49276469--49276575	26	4.2	26	92	1	180	36	23	7	32	1.83
49281803--49281961	27	5.9	26	86	5	210	33	22	25	18	1.96
49281803--49281964	54	3.0	54	90	2	247	33	22	25	17	1.96
49283573--49283654	26	3.2	26	92	0	146	35	24	7	32	1.83
49284412--49284505	47	2.0	47	100	0	188	31	8	23	36	1.85
49289945--49290009	23	2.8	22	79	9	76	47	16	7	27	1.74
49295322--49295368	3	15.7	3	95	0	85	68	0	29	2	1.02
49295907--49295977	31	2.3	31	85	7	92	21	8	19	50	1.73
49298050--49298210	76	2.1	76	87	2	225	34	13	27	25	1.93
49299272--49299301	15	1.9	16	93	6	53	26	0	33	40	1.57
49302610--49302711	33	3.2	32	75	15	111	34	22	10	32	1.89
49302616--49302729	33	3.5	32	75	13	106	33	23	11	31	1.90
49306022--49306064	19	2.3	19	79	0	50	13	4	2	79	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49308836--49308893	14	4.1	14	88	0	62	41	1	8	48	1.44
49308861--49308893	2	16.5	2	100	0	66	48	0	0	51	1.00
49309580--49309659	38	2.1	38	95	0	142	32	13	3	50	1.60
49313988--49314527	272	2.0	276	89	5	833	34	17	17	30	1.93
49314944--49314975	16	2.1	16	88	11	50	59	18	0	21	1.38
49315027--49315073	21	2.2	21	85	7	60	65	8	2	23	1.31
49319583--49319631	21	2.4	21	82	3	55	10	8	4	77	1.10
49321997--49322341	154	2.2	153	82	7	430	26	20	24	28	1.99
49321997--49322389	154	2.5	155	81	7	410	26	19	24	29	1.98
49322287--49322430	42	3.5	40	80	7	146	29	15	23	31	1.96
49322906--49322956	14	3.6	14	71	12	50	45	25	3	25	1.71
49323458--49323527	7	9.7	7	75	6	59	22	1	35	40	1.63
49323445--49323524	22	3.7	21	76	5	70	25	1	36	37	1.64
49323459--49323527	29	2.4	28	79	11	77	23	1	36	39	1.64
49323430--49323617	80	2.3	80	83	5	245	25	1	37	36	1.66
49326907--49327208	64	4.7	64	97	0	541	38	10	3	47	1.57
49328472--49328539	24	2.8	24	84	8	93	27	16	7	48	1.72
49328716--49328771	15	3.8	15	80	20	73	46	0	0	53	1.00
49328876--49329065	18	10.3	18	75	9	150	47	12	1	38	1.49
49328876--49329048	9	18.6	9	79	8	132	46	13	1	38	1.50
49329423--49329501	31	2.5	32	79	4	88	15	3	18	62	1.47
49329577--49329691	43	2.7	42	94	2	194	23	34	20	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49332445--49332593	80	1.9	80	81	2	183	22	30	24	22	1.99
49332486--49332593	40	2.7	38	85	8	128	21	29	25	23	1.99
49335047--49335075	4	7.5	4	92	7	51	48	0	0	51	1.00
49338039--49338206	40	4.2	40	79	1	158	22	27	23	26	2.00
49338055--49338204	80	1.9	80	84	5	205	21	27	24	26	1.99
49345671--49345724	17	3.2	15	76	20	54	46	46	3	3	1.38
49346973--49346999	2	13.5	2	100	0	54	48	0	0	51	1.00
49347572--49347636	3	22.0	3	77	3	69	30	7	0	61	1.24
49347588--49347660	15	4.9	15	77	12	53	27	10	0	61	1.29
49356082--49356155	28	2.6	28	89	4	114	31	13	22	32	1.93
49359222--49359375	40	3.8	40	80	1	157	25	26	21	26	1.99
49364545--49364642	3	32.7	3	76	8	92	61	4	5	29	1.36
49365630--49365683	12	4.5	12	72	22	51	81	3	7	7	0.97
49365630--49365683	25	2.3	23	84	12	65	81	3	7	7	0.97
49366437--49366771	43	7.7	43	68	14	213	20	22	22	34	1.97
49366460--49366792	87	3.8	85	91	2	522	19	23	21	35	1.96
49366441--49366794	173	2.0	174	90	1	559	19	23	21	35	1.96
49374855--49374891	19	1.9	19	88	0	56	45	8	18	27	1.77
49379639--49379718	3	26.7	3	71	9	56	60	5	6	28	1.43
49380705--49380761	25	2.2	25	84	9	71	80	3	7	8	1.00
49380854--49380892	19	2.0	20	85	5	53	41	30	0	28	1.57
49382259--49382292	14	2.7	12	90	9	50	58	0	2	38	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49382259--49382292	6	5.3	6	86	13	50	58	0	2	38	1.13
49390281--49390361	40	2.0	40	100	0	162	32	14	14	38	1.87
49390764--49390901	73	1.9	73	92	0	231	40	13	16	28	1.87
49402841--49402878	20	1.9	19	89	5	58	15	7	2	73	1.17
49415713--49415811	45	2.2	45	80	3	119	23	21	14	41	1.89
49424301--49424338	16	2.4	16	83	12	51	36	7	0	55	1.29
49434321--49434359	18	2.2	18	86	4	53	10	2	2	84	0.81
49434329--49434372	18	2.4	18	80	0	52	11	4	4	79	1.02
49443986--49444012	13	2.1	13	100	0	54	22	0	0	77	0.76
49447622--49447660	12	3.2	12	88	3	51	23	0	5	71	1.05
49448151--49448325	60	2.9	58	79	10	176	24	20	29	26	1.99
49448831--49448866	14	2.6	14	90	0	54	27	22	8	41	1.82
49456670--49456718	20	2.4	20	96	3	89	53	10	12	24	1.69
49457762--49457927	24	7.0	24	88	4	239	26	21	22	28	1.99
49457761--49457927	47	3.5	48	89	4	241	26	21	22	29	1.99
49457762--49457928	71	2.3	71	91	3	264	26	21	23	28	1.99
49457973--49458043	20	3.5	20	92	0	115	32	19	12	35	1.90
49457978--49458032	11	5.4	11	70	16	55	30	20	12	36	1.90
49458080--49458127	25	2.0	24	83	4	60	25	18	25	31	1.98
49459366--49459705	27	12.6	27	85	4	382	40	8	21	28	1.83
49462567--49462646	36	2.2	36	100	0	160	31	2	13	52	1.54
49462587--49462650	19	3.5	19	71	16	71	26	3	15	54	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49468352--49468395	17	2.4	19	81	11	56	18	6	6	68	1.35
49469527--49469573	24	2.0	24	86	0	67	17	10	48	23	1.77
49469595--49469641	24	2.0	24	87	8	69	34	14	12	38	1.85
49475095--49475175	20	4.1	20	73	6	74	38	19	30	11	1.87
49477710--49477777	34	2.0	35	91	2	111	29	35	5	29	1.81
49479258--49479282	13	1.9	13	100	0	50	48	16	4	32	1.64
49479305--49479537	9	25.3	9	67	20	65	55	15	3	25	1.54
49479305--49479467	13	12.0	13	70	20	68	57	15	1	25	1.49
49479355--49479419	19	3.4	20	81	14	75	58	9	3	29	1.44
49479369--49479465	41	2.5	38	78	14	99	57	14	3	24	1.51
49479311--49479609	69	4.4	68	84	3	345	55	15	2	26	1.53
49479333--49479618	15	19.3	15	66	23	74	55	14	3	26	1.54
49479311--49479609	137	2.2	136	84	3	379	55	15	2	26	1.53
49479651--49479809	13	12.4	13	68	17	82	51	21	6	20	1.69
49479643--49479764	54	2.3	54	86	2	174	50	22	4	22	1.65
49484655--49484876	39	5.6	39	87	0	291	24	21	30	23	1.99
49494675--49494723	24	2.0	24	100	0	98	38	16	12	32	1.86
49505575--49505843	46	5.8	47	82	9	302	28	18	28	23	1.98
49505575--49505842	93	2.9	94	86	5	357	29	18	28	23	1.98
49505578--49505841	139	1.9	142	88	7	405	29	18	28	23	1.98
49507543--49507587	22	2.0	22	100	0	90	35	0	46	17	1.49
49520561--49520980	49	8.7	49	92	1	677	32	7	29	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49526196--49526362	40	4.2	40	82	2	185	24	26	22	26	2.00
49527819--49527861	17	2.5	17	88	7	61	30	32	6	30	1.84
49534188--49534355	40	4.2	40	82	1	185	24	26	22	26	2.00
49536238--49536415	40	4.5	40	88	3	236	24	28	24	22	1.99
49544321--49544538	40	5.5	40	92	2	316	24	28	24	22	1.99
49559543--49559654	58	1.9	58	94	0	197	31	17	20	30	1.96
49567342--49567547	64	3.1	64	61	19	148	31	25	17	25	1.97
49567295--49567581	137	2.1	137	98	0	547	31	24	19	24	1.98
49567829--49567882	26	2.1	27	82	6	67	24	14	24	37	1.93
49569368--49569607	26	9.2	26	93	0	408	35	25	6	32	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292