genome.fa.s9.2.7.7.80.10.50.1000.256.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  256  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74047728--74047816	12	7.8	11	80	11	92	20	3	1	75	1.01
74051997--74052021	13	1.9	13	100	0	50	48	28	8	16	1.74
74053337--74053401	22	3.0	22	79	0	85	44	15	23	16	1.86
74053810--74053891	41	2.0	41	100	0	164	39	21	12	26	1.89
74053981--74054063	5	16.8	5	97	2	159	59	0	0	40	0.98
74054303--74054328	13	2.0	13	100	0	52	53	0	0	46	1.00
74056858--74056900	18	2.4	18	96	0	77	48	0	27	23	1.51
74057505--74057534	2	15.0	2	100	0	60	50	0	0	50	1.00
74057715--74057789	35	2.1	35	100	0	150	30	12	13	44	1.80
74058197--74058254	29	2.0	29	100	0	116	55	6	10	27	1.59
74058670--74058778	21	5.2	21	74	10	73	18	22	15	43	1.88
74059024--74059058	8	4.4	8	92	0	61	40	0	11	48	1.39
74059205--74059230	13	2.0	13	100	0	52	30	7	23	38	1.83
74061299--74061367	34	2.0	34	97	0	129	33	14	15	36	1.89
74063416--74063476	30	2.0	30	90	0	95	39	6	24	29	1.80
74066201--74066278	19	4.4	19	73	18	62	42	11	6	39	1.67
74066178--74066310	51	2.6	51	84	0	185	42	12	6	39	1.67
74086272--74086366	41	2.3	41	81	0	109	24	14	15	45	1.84
74095705--74095774	24	2.9	23	77	8	59	60	7	8	24	1.51
74095882--74095944	32	2.0	32	84	6	83	39	4	9	46	1.58
74101627--74101671	22	2.0	24	83	16	60	60	6	13	20	1.55
74105457--74105504	19	2.6	18	90	9	78	72	0	10	16	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74105473--74105528	23	2.4	23	75	21	55	73	1	3	21	1.08
74106391--74106461	11	6.5	11	76	12	58	66	2	1	29	1.15
74106400--74106447	15	3.1	16	83	16	57	70	2	0	27	0.98
74110649--74110696	19	2.6	18	90	9	78	72	0	10	16	1.10
74119742--74119789	16	3.1	15	80	19	62	27	0	2	70	0.98
74120677--74120716	19	2.1	19	100	0	80	15	10	0	75	1.05
74121899--74121949	24	2.1	25	96	3	95	31	13	27	27	1.94
74124971--74125018	16	3.1	15	80	19	62	27	0	2	70	0.98
74125906--74125945	19	2.1	19	100	0	80	15	10	0	75	1.05
74129390--74129502	57	2.0	57	100	0	226	30	23	14	32	1.94
74132931--74133038	44	2.4	44	87	3	144	29	23	13	33	1.93
74140299--74140406	44	2.4	44	87	3	144	29	23	13	33	1.93
74143975--74144089	44	2.6	44	85	2	149	35	13	22	27	1.92
74143975--74144108	46	3.0	45	82	4	153	35	14	23	26	1.93
74145761--74145791	6	5.2	6	92	0	53	80	0	0	19	0.71
74153424--74153449	12	2.2	12	100	0	52	46	15	7	30	1.74
74155673--74155701	3	9.7	3	100	0	58	34	34	0	31	1.58
74156723--74156759	2	18.5	2	94	0	65	45	0	0	54	1.00
74159965--74160013	24	2.0	24	96	0	89	53	2	4	40	1.32
74160061--74160113	14	3.7	14	80	5	52	26	1	22	49	1.60
74160102--74160147	21	2.1	22	84	11	60	15	0	41	43	1.46
74160520--74160583	22	2.9	23	77	15	71	64	3	3	29	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74160588--74160697	39	2.8	40	91	2	186	42	19	20	18	1.89
74160863--74160900	18	2.1	19	85	10	60	7	42	2	47	1.46
74166772--74166838	33	2.0	33	88	0	98	14	23	14	46	1.83
74166863--74167538	241	2.8	241	97	0	1289	33	18	14	33	1.91
74167658--74167785	9	13.6	9	76	9	121	46	21	0	31	1.57
74167675--74167752	39	2.0	39	97	0	147	46	21	0	32	1.52
74167671--74167783	57	2.0	57	89	0	172	46	23	0	30	1.58
74173650--74173716	31	2.2	31	83	0	80	17	4	17	59	1.53
74173787--74173898	43	2.6	43	92	0	188	25	31	18	25	1.98
74173839--74173962	62	2.0	62	91	0	203	24	26	17	31	1.97
74173901--74174094	43	4.5	43	87	1	264	24	27	18	29	1.98
74173796--74174005	105	2.0	105	90	1	332	23	28	18	29	1.98
74173901--74174101	86	2.3	85	87	1	294	23	26	18	31	1.97
74174406--74174430	12	2.1	12	100	0	50	40	8	0	52	1.31
74178564--74178617	18	3.3	18	66	28	57	24	50	7	18	1.72
74178554--74178622	30	2.3	30	100	0	138	27	52	5	14	1.64
74179102--74179246	23	6.2	23	69	16	77	36	5	2	55	1.38
74179177--74179246	25	2.8	25	79	12	72	38	4	1	55	1.28
74179200--74179243	12	3.8	12	80	17	56	40	4	0	54	1.21
74179221--74179247	14	1.9	14	100	0	54	40	0	0	59	0.98
74179239--74179320	25	3.4	23	77	12	76	30	7	6	56	1.51
74179315--74179363	23	2.1	23	85	7	64	32	6	2	59	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74179480--74179514	16	2.3	15	90	5	52	31	2	2	62	1.24
74180961--74181075	47	2.5	46	83	8	126	30	24	14	30	1.95
74181084--74181112	7	4.1	7	100	0	58	13	27	13	44	1.82
74181111--74181288	31	5.7	31	84	5	225	26	25	18	28	1.98
74181111--74181288	62	2.9	62	90	0	275	26	25	18	28	1.98
74181118--74181288	93	1.8	93	92	0	288	26	25	18	29	1.98
74181313--74181449	50	2.7	50	93	0	238	28	21	15	35	1.94
74183627--74183796	39	4.4	39	95	0	304	22	20	27	29	1.98
74183694--74183961	39	6.8	39	90	3	240	21	20	27	29	1.98
74187641--74187674	5	6.8	5	100	0	68	17	0	0	82	0.67
74195605--74195648	16	2.8	16	82	6	54	38	11	0	50	1.39
74202459--74202493	2	17.5	2	100	0	70	48	0	0	51	1.00
74204747--74205106	46	7.8	46	91	1	488	21	23	14	40	1.90
74207530--74207558	12	2.3	13	94	5	51	24	0	0	75	0.80
74208640--74208691	13	4.2	12	80	11	52	0	13	1	84	0.70
74208638--74208691	18	3.0	17	82	17	65	0	14	1	83	0.73
74209696--74210141	46	9.8	46	92	3	663	21	24	14	38	1.92
74209696--74210132	135	3.2	136	91	4	668	21	24	14	38	1.91
74215280--74215317	6	6.7	6	87	6	53	0	21	0	78	0.74
74226897--74226954	19	3.4	17	77	13	57	46	5	1	46	1.35
74226899--74226955	18	3.3	17	83	13	64	49	5	1	43	1.35
74227195--74227219	13	1.9	13	100	0	50	72	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74229696--74229722	14	1.9	14	100	0	54	48	14	14	22	1.81
74231961--74231993	17	1.9	17	93	0	57	54	3	9	33	1.47
74232794--74232943	39	3.9	38	91	0	201	28	18	5	47	1.71
74234477--74235745	210	6.1	210	90	3	1900	30	22	17	28	1.97
74246487--74246517	15	2.1	15	100	0	62	6	38	0	54	1.26
74246561--74246610	15	3.5	14	79	15	50	42	8	24	26	1.82
74247840--74247871	15	2.1	15	94	0	55	31	25	12	31	1.92
74250248--74250286	18	2.0	20	90	9	64	56	2	5	35	1.35
74250377--74250403	2	13.5	2	100	0	54	51	0	0	48	1.00
74250454--74250478	2	12.5	2	100	0	50	52	0	0	48	1.00
74251017--74251162	38	3.9	38	84	7	165	29	17	5	47	1.69
74251018--74251162	39	3.9	37	82	8	168	29	16	5	48	1.69
74252758--74252833	23	3.3	23	74	7	64	39	2	0	57	1.12
74253916--74253988	33	2.3	33	88	4	105	43	9	8	38	1.67
74254004--74254031	8	3.5	8	100	0	56	35	0	0	64	0.94
74255003--74255099	33	2.9	34	74	20	87	50	1	2	46	1.20
74259473--74259547	31	2.5	31	86	2	98	60	0	2	37	1.11
74261679--74261712	13	2.6	13	90	0	50	44	2	0	52	1.16
74261742--74261776	17	2.1	17	88	0	52	74	5	14	5	1.19
74263294--74263428	39	3.4	39	75	6	121	23	20	27	28	1.99
74269475--74269508	13	2.6	13	90	0	50	44	2	0	52	1.16
74269542--74269576	17	2.1	17	88	0	52	74	5	14	5	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74271095--74271229	39	3.4	39	75	6	121	23	20	27	28	1.99
74274494--74274546	21	2.7	18	81	16	61	66	0	1	32	1.03
74280666--74280692	8	3.4	8	100	0	54	11	0	0	88	0.50
74281044--74281070	3	9.0	3	100	0	54	0	33	0	66	0.92
74281385--74281460	21	3.5	22	69	18	61	40	1	1	56	1.16
74283257--74283290	13	2.6	13	85	0	50	38	11	26	23	1.89
74283243--74283313	26	2.7	26	78	8	81	33	8	26	30	1.86
74283846--74283877	12	2.7	12	100	0	64	40	15	6	37	1.73
74283958--74283997	21	1.9	21	89	0	62	22	37	10	30	1.87
74285390--74285628	72	3.3	72	91	1	383	55	14	5	24	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292