genome.fa.s9.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  129  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38504025--38504159	48	2.8	48	88	2	191	22	19	25	32	1.97
38511465--38511538	29	2.6	29	95	0	139	27	31	14	27	1.95
38511406--38511538	58	2.3	58	80	2	133	24	33	17	24	1.96
38519303--38519376	29	2.6	29	95	0	139	27	31	14	27	1.95
38519244--38519376	58	2.3	58	80	2	133	24	33	17	24	1.96
38527181--38527254	29	2.6	29	95	0	139	27	31	14	27	1.95
38527122--38527254	58	2.3	58	80	2	133	24	33	17	24	1.96
38529778--38529865	24	3.6	24	75	6	88	28	26	17	28	1.97
38531976--38532219	29	8.5	29	79	10	250	28	24	13	33	1.93
38531976--38532219	59	4.2	59	79	10	263	28	24	13	33	1.93
38531976--38532211	84	2.8	85	90	3	341	29	24	13	33	1.93
38531976--38532219	30	8.5	30	81	8	256	28	24	13	33	1.93
38533742--38533819	37	2.1	37	90	4	122	26	29	21	21	1.99
38540939--38541113	46	3.8	45	77	13	194	21	21	28	28	1.99
38540936--38541106	93	1.8	93	92	0	288	21	21	28	28	1.99
38548475--38548598	46	2.7	46	87	0	158	21	20	25	33	1.97
38555049--38555093	22	2.0	22	86	0	63	13	28	26	31	1.94
38558493--38558537	22	2.0	22	100	0	90	13	26	26	33	1.93
38560059--38560232	93	1.9	93	93	0	303	28	29	21	20	1.98
38560061--38560228	46	3.6	46	80	13	200	28	29	21	20	1.98
38565869--38566092	40	5.7	40	88	5	273	25	26	20	27	1.99
38565897--38566092	40	4.9	40	90	6	278	25	26	20	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38574039--38574261	40	5.7	40	88	6	273	25	26	21	27	1.99
38574067--38574261	40	4.9	40	90	8	278	24	26	21	28	1.99
38577774--38577815	18	2.3	18	80	11	50	66	2	23	7	1.28
38577783--38577817	18	1.9	18	88	11	54	62	2	28	5	1.32
38579457--38579554	52	1.9	51	87	6	144	36	13	13	36	1.83
38581661--38581692	14	2.3	15	89	10	50	46	6	0	46	1.27
38584667--38584694	8	3.5	8	100	0	56	10	0	0	89	0.49
38584661--38584706	16	3.0	15	84	6	65	13	4	2	80	0.95
38587029--38587053	8	3.1	8	100	0	50	0	12	40	48	1.40
38587583--38587625	21	2.0	23	86	9	63	44	6	2	46	1.43
38591322--38591373	16	3.2	16	83	0	68	48	1	17	32	1.58
38591359--38591449	44	2.0	46	82	4	114	32	5	24	37	1.78
38591550--38591675	58	2.2	56	82	14	152	53	3	1	41	1.29
38591617--38591649	17	1.9	17	93	0	57	66	0	0	33	0.92
38596079--38596122	20	2.1	21	95	4	81	27	6	13	52	1.66
38597993--38598120	47	2.7	47	85	4	170	25	14	26	33	1.95
38610462--38610524	28	2.2	28	91	0	99	31	30	6	31	1.83
38613226--38613276	25	2.0	25	96	0	93	41	27	11	19	1.86
38619506--38619603	35	2.6	38	81	14	123	34	11	22	31	1.89
38621433--38621495	28	2.2	28	91	0	99	31	30	6	31	1.83
38625656--38625690	18	1.9	18	88	0	52	54	0	0	45	0.99
38625665--38625729	30	2.2	29	86	8	87	53	1	0	44	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38625747--38625809	28	2.3	27	81	8	72	49	0	6	44	1.28
38625765--38625820	13	4.2	13	79	6	51	53	0	3	42	1.18
38626213--38626290	31	2.6	31	79	4	88	35	8	14	41	1.77
38628756--38628815	30	2.0	30	90	0	93	28	10	23	38	1.87
38633956--38634082	41	3.1	40	84	5	148	36	21	20	22	1.95
38634310--38634363	14	3.9	14	80	7	65	40	42	1	14	1.57
38634371--38634453	14	5.8	14	72	9	69	50	20	3	25	1.64
38634371--38634446	28	2.6	28	85	4	89	51	18	3	26	1.63
38634499--38634541	21	2.0	21	86	0	59	25	2	27	44	1.66
38634952--38635038	15	6.0	14	78	10	77	72	1	0	26	0.92
38634987--38635048	15	4.2	15	81	4	81	61	1	0	37	1.06
38634927--38635041	7	14.9	8	81	10	82	69	1	0	28	0.98
38635134--38635171	17	2.2	17	90	0	58	78	0	2	18	0.86
38635540--38635573	8	4.1	8	92	7	59	0	11	2	85	0.71
38635540--38635573	17	2.1	17	94	5	61	0	11	2	85	0.71
38639426--38639473	20	2.4	21	82	10	64	22	2	6	68	1.23
38639598--38639699	43	2.4	42	88	6	159	23	21	29	25	1.99
38640007--38640130	51	2.4	51	86	6	171	31	10	18	39	1.85
38640368--38640429	28	2.2	28	91	0	97	30	20	16	32	1.95
38642989--38643152	23	7.1	23	87	4	224	28	25	21	25	1.99
38647477--38647745	46	5.7	49	80	11	255	27	17	30	24	1.97
38647732--38647807	38	2.0	38	94	0	134	27	14	34	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38652607--38652654	25	1.9	25	86	0	69	33	25	16	25	1.96
38652691--38652757	20	3.3	20	89	0	107	37	10	20	31	1.87
38652807--38652913	24	4.4	24	95	2	169	29	18	21	29	1.97
38660713--38660760	25	1.9	25	86	0	69	33	25	16	25	1.96
38660797--38660863	20	3.3	20	89	0	107	35	11	19	32	1.88
38660913--38661068	24	6.4	24	93	1	249	31	18	21	28	1.97
38666585--38666627	22	1.9	23	85	4	61	34	2	16	46	1.60
38674749--38674781	13	2.6	13	95	4	59	45	21	0	33	1.52
38681064--38681189	40	3.2	39	80	6	139	21	25	24	28	1.99
38681003--38681189	80	2.3	80	78	12	204	22	27	24	25	2.00
38689125--38689250	40	3.2	39	80	6	139	21	25	24	28	1.99
38693519--38693644	40	3.2	39	80	6	139	21	25	24	28	1.99
38693458--38693644	80	2.3	80	78	12	204	22	27	24	25	2.00
38701582--38701672	40	2.3	40	88	0	128	19	23	25	31	1.98
38713789--38713946	86	1.8	85	84	6	212	29	20	18	31	1.96
38719073--38719175	29	3.6	28	81	5	116	21	16	33	29	1.95
38727059--38727161	29	3.6	28	81	5	116	21	16	33	29	1.95
38736464--38736566	29	3.6	28	81	5	116	21	16	33	29	1.95
38744435--38744537	29	3.6	28	81	5	116	21	16	33	29	1.95
38747093--38747130	20	1.9	20	84	10	51	42	13	23	21	1.88
38748994--38749225	46	5.0	46	88	3	315	40	12	24	22	1.89
38751737--38751944	40	5.2	39	82	3	202	25	25	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38751737--38751943	80	2.6	80	82	3	238	25	26	23	25	2.00
38759572--38759754	40	4.6	41	78	9	164	25	24	26	24	2.00
38759572--38759756	79	2.3	82	81	7	211	24	23	27	24	2.00
38759625--38759789	79	2.1	79	81	4	190	25	23	27	24	2.00
38770501--38770601	28	3.5	28	86	6	114	29	13	26	29	1.94
38778456--38778556	28	3.5	28	86	6	114	29	13	26	29	1.94
38780771--38780886	41	2.8	41	72	13	103	30	27	18	24	1.98
38790106--38790163	29	2.0	29	100	0	116	41	10	17	31	1.83
38790976--38791030	28	1.9	29	82	10	69	30	1	20	47	1.60
38791555--38791790	87	2.7	86	78	4	258	37	13	26	22	1.92
38791555--38791791	29	8.1	29	76	7	178	37	13	26	22	1.92
38793083--38793144	26	2.4	26	94	0	106	16	11	24	48	1.78
38797510--38797552	12	3.3	13	84	15	54	37	6	0	55	1.27
38797611--38797680	29	2.4	29	85	0	95	38	12	22	25	1.90
38797637--38797767	58	2.3	58	81	2	156	41	10	24	23	1.86
38797668--38797867	29	6.9	29	78	6	147	38	11	27	23	1.89
38801550--38801731	40	4.6	40	90	2	269	28	25	21	23	1.99
38809982--38810163	40	4.6	40	89	2	260	29	25	21	23	1.99
38814935--38815078	49	2.9	49	88	0	207	27	18	25	28	1.98
38819397--38819434	20	1.9	20	84	10	51	44	10	21	23	1.83
38821336--38821647	46	6.8	46	90	2	439	38	15	24	21	1.92
38821340--38821647	91	3.3	92	89	2	431	37	15	25	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38825149--38825321	46	3.7	46	78	10	199	22	20	27	29	1.99
38825146--38825316	93	1.8	93	93	0	297	22	21	28	28	1.99
38831210--38831250	15	2.6	16	92	7	66	26	7	31	34	1.84
38832650--38832820	46	3.8	45	80	12	215	21	21	28	29	1.98
38841969--38842152	40	4.7	40	88	6	236	25	21	27	25	2.00
38841969--38842185	80	2.7	78	80	11	237	26	21	26	25	1.99
38849919--38850100	39	4.7	40	86	8	218	25	22	26	24	2.00
38849919--38850133	78	2.7	76	79	13	206	26	21	26	24	2.00
38852088--38852135	25	1.9	25	91	0	78	31	25	18	25	1.98
38852174--38852212	10	3.8	10	90	6	60	33	15	17	33	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292