genome.fa.s9.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  141  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41861272--41861309	17	2.2	17	86	9	51	18	42	26	13	1.87
41865459--41865650	40	4.8	40	92	1	314	25	28	22	23	2.00
41868131--41868251	37	3.3	37	95	2	217	21	33	19	25	1.96
41868353--41868606	49	5.4	49	87	9	375	29	33	8	28	1.86
41868347--41868606	88	2.8	90	86	7	355	30	32	8	28	1.86
41868410--41868487	39	2.0	39	100	0	156	33	35	2	28	1.71
41873637--41873730	47	2.0	47	100	0	188	23	29	12	34	1.92
41878555--41878657	29	3.6	29	89	0	152	25	32	15	27	1.96
41878526--41878657	58	2.3	58	81	0	156	25	33	15	25	1.95
41885487--41885617	29	4.6	29	92	1	210	25	32	15	26	1.95
41885429--41885617	86	2.2	87	80	5	213	25	33	15	24	1.95
41885458--41885617	57	2.8	58	86	1	214	25	33	15	25	1.95
41886924--41887107	53	3.4	53	77	2	152	20	25	17	36	1.95
41886936--41887107	55	3.2	52	74	5	146	19	25	19	36	1.95
41892786--41892855	21	3.2	21	67	25	63	18	14	25	41	1.88
41901510--41901761	55	4.8	53	79	7	212	22	25	16	35	1.95
41907786--41907822	18	2.1	18	100	0	74	37	5	5	51	1.48
41909131--41909740	27	22.6	27	85	4	737	26	22	9	40	1.85
41910981--41911028	25	1.9	25	86	0	69	33	25	16	25	1.96
41911071--41911131	20	3.0	20	92	0	104	34	11	21	32	1.89
41911181--41911323	24	6.0	24	91	4	209	28	22	22	26	1.99
41911181--41911323	47	3.0	47	90	5	207	28	22	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41911181--41911324	71	2.0	72	89	4	220	29	22	22	26	1.99
41911515--41911578	31	2.1	31	90	0	101	35	15	23	25	1.94
41913436--41913538	29	3.6	29	89	0	152	26	33	14	26	1.95
41917739--41918068	40	8.3	40	92	0	491	23	20	28	26	1.99
41918100--41918234	57	2.4	57	78	9	141	22	19	30	27	1.98
41921656--41921991	47	7.1	47	91	3	467	33	11	29	26	1.91
41921754--41921828	23	3.2	23	62	23	57	29	10	32	28	1.90
41921930--41922100	46	3.7	46	85	3	202	33	8	30	26	1.87
41924862--41924892	16	1.9	16	93	0	53	35	22	0	41	1.54
41924859--41924898	20	2.0	20	85	0	53	37	22	0	40	1.54
41925115--41925315	108	1.8	110	88	4	309	23	25	16	34	1.95
41925068--41925319	55	4.8	54	80	9	263	22	25	16	35	1.95
41927377--41927463	37	2.3	36	94	5	147	26	33	19	20	1.97
41927512--41927703	49	3.8	51	91	5	307	30	26	8	34	1.87
41932257--41932382	40	3.2	39	80	6	139	21	25	24	28	1.99
41932196--41932382	80	2.3	80	78	12	204	22	27	24	25	2.00
41939914--41939939	8	3.2	8	100	0	52	61	15	23	0	1.33
41940346--41940471	40	3.2	39	80	6	139	21	25	24	28	1.99
41940285--41940471	80	2.3	80	78	12	204	22	27	24	25	2.00
41944267--41944430	40	4.1	40	81	4	170	25	28	21	24	1.99
41944253--41944430	80	2.2	80	81	3	198	24	28	21	25	1.99
41958558--41958769	27	7.9	26	78	10	169	33	9	18	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41958558--41958768	54	3.9	52	78	10	194	34	9	18	37	1.83
41969285--41969502	39	5.6	38	83	3	229	29	26	23	21	1.99
41969295--41969502	78	2.7	78	84	1	274	30	26	22	20	1.98
41972565--41972713	80	1.9	80	81	2	183	22	30	24	22	1.99
41972606--41972713	40	2.7	38	85	8	128	21	29	25	23	1.99
41980682--41980830	80	1.9	80	81	2	183	22	30	24	22	1.99
41980723--41980830	40	2.7	38	85	8	128	21	29	25	23	1.99
41984647--41984867	40	5.6	41	85	8	298	24	22	26	26	2.00
41985095--41985136	22	1.9	22	85	9	59	33	9	14	42	1.78
41992902--41993122	40	5.6	41	85	8	298	24	22	26	26	2.00
41993349--41993390	22	1.9	22	85	9	59	33	9	14	42	1.78
41995813--41995925	55	2.1	55	84	3	147	23	30	27	17	1.97
41997872--41998014	40	3.6	40	78	6	139	27	21	25	24	1.99
42006443--42006498	27	2.0	28	86	13	80	30	14	30	25	1.95
42011614--42011763	35	4.3	35	76	3	131	29	22	17	30	1.97
42015126--42015171	23	2.0	23	95	0	83	36	10	13	39	1.79
42015338--42015367	13	2.3	13	94	0	51	30	6	23	40	1.80
42018324--42018367	6	7.3	6	100	0	88	15	0	0	84	0.63
42021323--42021363	21	2.0	20	95	4	73	48	24	0	26	1.51
42026372--42026507	40	3.3	40	74	12	107	27	11	27	33	1.92
42026361--42026548	83	2.3	80	77	8	198	25	12	27	35	1.92
42030901--42031074	48	3.6	48	86	3	226	28	22	25	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42030898--42031074	96	1.8	96	86	4	259	28	22	25	23	1.99
42051182--42051365	40	4.6	39	75	6	138	26	23	27	22	2.00
42051222--42051410	80	2.4	81	77	4	186	23	24	29	22	1.99
42059874--42059903	11	2.7	11	89	0	51	60	0	0	40	0.97
42059877--42059916	20	2.0	20	90	0	62	57	5	0	37	1.21
42060699--42060740	15	2.9	14	93	6	75	0	0	35	64	0.94
42060713--42060791	38	2.1	38	82	0	95	3	1	21	73	1.06
42061705--42061982	74	3.8	74	89	2	377	28	21	18	31	1.97
42061705--42062299	158	3.9	144	89	5	481	30	21	17	29	1.96
42062008--42062141	71	1.9	71	92	0	223	29	22	16	31	1.96
42061851--42062390	158	3.4	159	97	1	985	31	21	17	29	1.96
42062166--42062299	71	1.9	71	90	0	214	29	23	16	30	1.96
42073928--42073973	20	2.3	20	88	3	67	58	4	0	36	1.18
42074767--42074810	17	2.5	17	85	3	61	6	2	25	65	1.28
42075643--42075826	40	4.6	39	75	6	138	26	23	27	22	2.00
42075683--42075871	80	2.4	81	77	4	186	23	24	29	22	1.99
42077514--42077554	21	2.0	20	95	4	73	48	24	0	26	1.51
42080229--42080401	93	1.9	93	89	4	269	28	28	20	21	1.98
42080222--42080397	46	3.8	47	76	14	177	29	28	20	21	1.98
42087020--42087127	36	3.0	36	78	6	103	39	14	9	36	1.79
42087054--42087206	18	7.9	19	68	13	73	40	14	11	33	1.82
42087317--42087442	53	2.4	53	83	0	180	42	19	18	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42090497--42090607	24	4.6	24	87	3	134	27	16	22	34	1.95
42096080--42096139	30	2.0	30	100	0	120	30	20	16	33	1.94
42099413--42099542	41	3.2	40	84	2	161	52	7	20	19	1.70
42102319--42102471	39	3.9	39	92	0	252	23	20	32	23	1.98
42102320--42102490	39	4.4	39	89	0	243	23	21	30	23	1.99
42104935--42105116	46	4.0	46	88	1	240	21	23	15	39	1.91
42105212--42105267	27	2.1	27	100	0	112	26	37	17	17	1.93
42107043--42107080	20	1.9	20	89	10	60	23	23	10	42	1.85
42109132--42109165	13	2.6	13	100	0	68	17	50	26	5	1.69
42109573--42109601	2	14.5	2	100	0	58	51	0	0	48	1.00
42115215--42115249	2	17.5	2	100	0	70	48	0	0	51	1.00
42115878--42115986	25	4.4	25	71	7	89	34	19	24	21	1.96
42117828--42117897	27	2.5	28	95	2	124	28	14	27	30	1.95
42117828--42117909	27	3.0	27	85	8	78	29	15	24	30	1.96
42125590--42125659	27	2.5	28	95	2	124	28	14	27	30	1.95
42125590--42125671	27	3.0	27	85	8	78	29	15	24	30	1.96
42127307--42127345	5	7.6	5	82	5	51	41	17	2	38	1.64
42140141--42140191	11	4.3	12	75	9	52	23	1	3	70	1.14
42143544--42143586	17	2.6	17	82	7	54	32	0	2	65	1.06
42144071--42144112	19	2.2	20	87	12	61	52	0	0	47	1.00
42144077--42144121	22	2.0	22	87	12	65	55	2	0	42	1.12
42145299--42145357	31	1.9	31	86	3	84	49	10	5	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42147679--42147722	21	2.0	21	86	8	61	34	0	0	65	0.93
42148852--42148909	24	2.4	24	97	0	107	44	3	6	44	1.47
42157802--42157915	36	3.1	36	69	14	104	35	22	19	21	1.96
42157802--42157969	76	2.2	76	84	0	210	37	22	16	23	1.94
42161881--42162001	50	2.4	52	88	2	183	37	14	15	33	1.88
42162017--42162105	39	2.3	39	92	0	151	47	15	8	28	1.76
42170848--42170891	20	2.1	21	87	4	63	43	6	15	34	1.74
42173323--42173608	136	2.1	137	96	0	520	32	25	18	24	1.97
42175395--42175502	26	4.2	25	92	2	171	37	23	5	34	1.78
42179252--42179537	136	2.1	137	96	0	520	32	25	18	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292