genome.fa.s9.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  138  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40924563--40924614	18	2.7	19	80	14	63	1	9	5	82	0.90
40935791--40935815	13	1.9	13	100	0	50	40	24	4	32	1.73
40941624--40941739	42	2.7	42	73	15	103	34	25	14	25	1.94
40942886--40942912	13	2.1	13	100	0	54	48	22	0	29	1.51
40944680--40944715	18	2.0	18	94	0	63	30	5	11	52	1.59
40947228--40947312	24	3.5	24	90	3	118	25	16	24	32	1.96
40951558--40951658	28	3.5	28	86	6	114	29	13	26	29	1.94
40959519--40959619	28	3.5	28	86	6	114	29	13	26	29	1.94
40961112--40961153	16	2.6	16	82	17	52	21	0	26	52	1.47
40967037--40967376	40	8.6	40	89	1	488	23	19	29	27	1.98
40968847--40968882	18	2.1	17	89	5	54	11	30	36	22	1.89
40970751--40970789	12	3.3	11	86	13	51	84	0	2	12	0.72
40975449--40975486	20	1.9	20	88	0	58	34	2	10	52	1.50
40977115--40977183	28	2.5	28	95	2	122	43	27	10	18	1.82
40981667--40981747	4	20.2	4	100	0	162	24	0	24	50	1.49
40984926--40984977	20	2.6	20	93	0	86	17	34	23	25	1.96
40988202--40988285	28	3.2	28	65	25	83	23	16	29	29	1.96
40988148--40988429	49	5.7	49	81	6	300	26	18	26	28	1.98
40988157--40988436	100	2.8	100	86	3	359	26	18	26	28	1.98
40991413--40991477	15	4.4	15	78	16	73	9	13	13	63	1.53
40993653--40993736	28	3.2	28	65	25	83	23	16	29	29	1.96
40993600--40993865	48	5.7	46	79	12	244	25	18	27	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40993656--40993879	46	4.9	44	81	11	195	25	17	28	29	1.98
40993706--40993872	86	1.9	87	95	4	302	24	18	27	29	1.98
40996856--40996920	15	4.4	15	78	16	73	9	12	13	64	1.49
40999056--40999226	93	1.8	93	96	0	315	28	29	21	21	1.98
40999048--40999223	46	3.8	46	80	12	225	28	28	21	21	1.98
41001588--41001676	30	3.0	30	79	11	94	56	15	17	10	1.67
41001588--41001670	15	5.6	14	73	10	58	55	16	18	9	1.68
41001599--41001676	15	5.2	15	75	9	70	55	15	17	11	1.69
41004624--41004794	93	1.8	93	96	0	315	28	29	21	21	1.98
41004616--41004791	46	3.8	46	80	12	225	28	28	21	21	1.98
41007393--41007665	51	5.5	50	82	4	282	26	18	26	28	1.98
41007489--41007676	100	1.9	100	96	0	349	25	19	26	28	1.99
41007386--41007681	49	5.9	49	82	3	313	26	18	26	28	1.98
41011680--41011719	21	2.0	20	85	5	53	10	30	7	52	1.62
41019735--41019905	93	1.8	93	93	2	299	28	28	20	23	1.99
41019727--41019902	46	3.8	46	76	11	189	28	27	19	23	1.98
41023207--41023275	28	2.5	28	95	2	122	18	10	27	43	1.82
41024904--41024941	20	1.9	20	88	0	58	52	10	2	34	1.50
41031218--41031286	28	2.5	28	95	2	122	18	10	27	43	1.82
41032913--41032950	20	1.9	20	88	0	58	52	10	2	34	1.50
41033686--41033734	15	3.4	15	86	5	66	59	12	18	10	1.60
41036659--41036829	93	1.8	93	96	0	315	28	29	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41036651--41036826	46	3.8	46	81	10	223	28	29	20	21	1.98
41039793--41039826	12	2.8	12	100	0	68	26	44	14	14	1.84
41048104--41048139	10	3.7	10	85	7	56	25	11	13	50	1.75
41050244--41050280	8	4.6	8	89	0	56	5	24	16	54	1.63
41050244--41050280	16	2.3	16	100	0	74	5	24	16	54	1.63
41053529--41053695	40	4.2	40	78	6	160	25	22	27	24	2.00
41063330--41063369	20	1.9	22	85	10	57	47	0	10	42	1.37
41065313--41065360	25	1.9	25	86	0	69	33	25	16	25	1.96
41065404--41065462	20	3.0	20	97	0	109	37	10	20	32	1.86
41065408--41065462	11	5.4	11	70	16	55	38	10	20	30	1.87
41065513--41065631	24	5.0	24	88	5	170	28	21	22	26	1.99
41065513--41065631	47	2.5	48	89	5	170	28	21	22	26	1.99
41065823--41065886	31	2.1	31	96	0	119	39	15	21	23	1.92
41067892--41067931	20	1.9	22	85	10	57	47	0	10	42	1.37
41070582--41070682	28	3.5	28	84	4	103	28	13	27	29	1.95
41070611--41070682	29	2.5	29	91	6	112	30	13	26	29	1.94
41073074--41073127	11	5.4	11	70	20	55	37	11	20	31	1.88
41073069--41073127	19	3.0	20	95	5	111	35	10	20	33	1.86
41073178--41073296	24	5.0	24	88	5	170	28	21	22	26	1.99
41073178--41073296	47	2.5	48	89	5	170	28	21	22	26	1.99
41073488--41073551	31	2.1	31	96	0	119	39	15	21	23	1.92
41082655--41082821	40	4.2	40	79	6	169	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41090650--41090791	40	3.5	40	83	1	124	27	23	26	22	1.99
41090689--41090817	40	3.2	39	84	6	152	24	22	27	25	2.00
41098898--41098988	45	2.0	45	95	0	164	39	4	10	45	1.60
41106943--41107091	57	2.6	57	76	7	149	31	17	21	29	1.96
41121468--41121647	40	4.5	40	80	7	188	25	26	22	26	2.00
41121468--41121645	79	2.2	81	84	4	227	24	26	23	25	2.00
41128223--41129651	773	1.9	767	89	4	2223	29	21	14	34	1.93
41130266--41130335	27	2.6	27	93	2	113	30	28	14	27	1.95
41132621--41132879	40	6.4	40	87	2	295	23	26	23	26	2.00
41135249--41135311	19	3.2	20	71	22	62	60	0	4	34	1.18
41135234--41135316	9	8.9	9	72	12	60	59	1	3	36	1.23
41135486--41135517	3	10.7	3	100	0	64	68	0	0	31	0.90
41135651--41135681	15	2.1	15	100	0	62	19	6	6	67	1.35
41138670--41138701	13	2.5	13	94	0	55	9	12	12	65	1.47
41141276--41141317	21	2.0	21	90	0	66	26	40	7	26	1.81
41156373--41156460	31	2.8	32	91	3	142	17	10	42	30	1.82
41157895--41157951	30	1.9	30	100	0	114	10	21	24	43	1.83
41162822--41162871	25	2.0	26	92	4	84	44	18	0	38	1.50
41163786--41163824	20	2.0	20	84	0	51	38	12	0	48	1.42
41175253--41175445	40	4.8	40	83	6	189	23	24	26	25	2.00
41178272--41178318	23	2.0	23	100	0	94	25	21	36	17	1.94
41188360--41188526	40	4.2	40	81	2	176	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41188376--41188526	80	1.9	79	83	6	198	23	27	22	25	2.00
41196374--41196540	40	4.2	40	81	2	176	24	27	22	25	2.00
41196390--41196540	80	1.9	79	83	6	198	23	27	22	25	2.00
41206977--41207276	33	9.1	33	79	1	235	20	21	14	43	1.87
41206986--41207276	66	4.4	66	77	3	271	19	21	15	43	1.88
41207003--41207278	99	2.8	99	81	3	322	19	21	15	43	1.88
41209942--41210217	49	5.6	50	85	6	377	27	13	23	35	1.92
41214234--41214416	79	2.3	80	81	8	212	23	27	24	24	2.00
41214234--41214418	40	4.7	40	78	6	180	23	27	24	24	2.00
41232246--41232332	24	3.6	24	95	0	156	21	17	26	34	1.95
41232246--41232354	48	2.3	48	90	3	166	24	17	24	33	1.96
41234425--41234491	33	2.0	33	100	0	134	46	20	5	26	1.74
41241529--41241695	40	4.2	40	82	2	185	24	26	22	26	2.00
41249513--41249679	40	4.2	40	82	2	185	24	26	22	26	2.00
41255783--41255831	24	2.0	24	88	7	73	42	26	8	22	1.81
41259481--41259610	29	4.5	29	86	6	165	27	26	13	32	1.94
41267237--41267366	29	4.5	29	86	6	165	27	26	13	32	1.94
41272396--41272498	29	3.5	28	79	7	91	20	16	33	29	1.94
41277001--41277101	28	3.5	28	86	6	114	29	26	13	29	1.94
41283530--41283602	29	2.5	29	93	0	101	26	31	16	26	1.96
41295819--41295891	29	2.5	29	93	0	101	26	31	16	26	1.96
41300582--41300682	28	3.5	28	86	6	114	29	26	13	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41302857--41302927	24	3.0	23	81	8	79	18	14	33	33	1.90
41310750--41310862	24	5.0	23	70	20	76	20	14	32	32	1.92
41310747--41310831	42	2.0	42	100	0	170	24	14	30	30	1.94
41314150--41314326	46	3.8	46	76	10	171	22	19	28	29	1.98
41314148--41314319	93	1.8	93	88	0	263	22	20	28	29	1.98
41317731--41318172	27	16.6	27	85	5	578	27	22	9	40	1.84
41317731--41318172	53	8.3	54	85	5	571	27	22	9	40	1.84
41317731--41318172	80	5.5	81	86	6	580	27	22	9	40	1.84
41319491--41319567	9	7.9	9	72	16	64	35	9	20	35	1.85
41319500--41319571	11	7.1	11	70	17	66	36	12	19	31	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292