genome.fa.s9.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  146  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43395647--43395834	100	1.9	100	93	0	322	26	18	25	30	1.98
43397179--43397242	31	2.1	31	90	0	101	25	23	15	35	1.94
43397450--43397577	24	5.4	24	92	5	192	28	21	19	29	1.98
43397631--43397693	20	3.2	20	97	0	117	31	19	12	36	1.89
43397635--43397691	9	5.9	9	73	15	51	35	21	8	35	1.84
43397730--43397777	25	1.9	25	86	0	69	25	16	25	33	1.96
43401171--43401223	20	2.6	19	80	11	61	1	18	20	58	1.49
43401246--43401300	25	2.2	25	83	6	67	10	18	12	58	1.63
43401805--43401859	16	3.4	16	89	0	92	36	5	27	30	1.79
43409816--43409896	28	3.2	28	60	26	70	24	16	16	43	1.87
43409810--43409905	48	2.0	48	100	0	192	25	16	16	41	1.89
43411234--43411268	3	11.7	3	93	0	61	31	2	0	65	1.07
43415181--43415205	3	8.3	3	100	0	50	32	0	0	68	0.90
43415794--43415931	70	2.0	70	98	0	267	35	15	23	25	1.94
43445791--43446096	49	6.4	49	92	4	464	30	8	31	29	1.88
43446198--43446282	37	2.3	37	95	0	152	24	20	34	21	1.97
43449961--43449999	19	2.1	19	95	0	69	35	5	12	46	1.65
43455977--43456008	16	2.0	16	100	0	64	50	12	6	31	1.65
43461560--43461599	21	2.0	20	90	5	62	42	22	0	35	1.54
43473946--43474202	49	5.3	49	95	1	439	31	8	30	29	1.86
43476264--43476329	32	2.1	32	91	0	105	42	24	10	22	1.85
43481241--43481395	42	3.5	42	75	11	159	23	25	20	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43481327--43481438	42	2.7	42	82	0	125	28	25	16	29	1.96
43481241--43481408	90	1.9	90	86	2	239	25	25	19	30	1.98
43481458--43481583	48	2.6	47	85	5	171	30	30	15	24	1.95
43490737--43490846	26	4.2	26	97	0	184	33	5	24	36	1.79
43492331--43492383	26	2.0	26	85	7	72	37	22	15	24	1.92
43496485--43496619	26	5.2	26	97	0	227	32	5	25	37	1.78
43498106--43498154	25	2.0	25	84	8	64	38	20	16	24	1.92
43512885--43513066	40	4.6	40	93	3	298	23	21	27	26	1.99
43517348--43517483	38	3.6	38	81	1	164	36	27	18	18	1.94
43517348--43517493	77	1.9	77	81	4	179	36	27	17	18	1.94
43518704--43518741	2	19.5	2	89	5	60	52	0	0	47	1.00
43521808--43521917	58	1.9	57	88	3	168	29	29	19	22	1.98
43521815--43521914	29	3.5	28	70	9	85	30	27	20	23	1.98
43523663--43523828	38	4.3	38	80	3	143	33	25	19	20	1.97
43527213--43527296	39	2.2	39	88	0	123	27	11	25	35	1.91
43527745--43527877	51	2.6	51	78	0	149	41	12	6	39	1.69
43528783--43528976	96	2.0	96	88	0	289	12	34	17	35	1.88
43530660--43530792	51	2.6	51	78	0	149	41	12	6	39	1.69
43531487--43531540	2	27.0	2	100	0	108	50	0	0	50	1.00
43532664--43532710	9	5.2	9	76	7	51	44	0	0	55	0.99
43536188--43536241	24	2.2	24	90	3	81	38	12	22	25	1.90
43537797--43537823	13	2.1	13	100	0	54	37	25	7	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43540288--43540537	95	2.6	94	84	2	313	26	26	16	31	1.96
43544571--43544640	27	2.5	28	88	2	106	31	25	14	28	1.95
43552492--43552561	27	2.5	28	88	2	106	31	25	14	28	1.95
43556808--43556991	94	1.9	94	83	3	235	31	26	9	33	1.88
43558121--43558187	28	2.4	28	82	5	82	31	7	10	50	1.64
43558373--43558455	43	1.9	44	85	2	114	22	18	24	34	1.96
43567989--43568118	40	3.2	40	91	4	215	24	19	23	33	1.97
43567991--43568118	42	3.1	42	93	2	215	24	19	23	32	1.97
43571421--43571587	46	3.6	45	78	11	151	22	28	20	27	1.99
43577215--43577252	2	19.0	2	94	0	67	47	0	2	50	1.15
43584398--43584651	55	4.8	52	77	9	214	35	17	25	21	1.95
43584408--43584604	107	1.8	110	86	5	294	34	17	25	22	1.96
43584843--43584873	16	1.9	16	93	0	53	41	0	22	35	1.54
43591417--43591551	40	3.4	40	92	0	225	28	28	20	22	1.98
43597550--43597641	42	2.2	42	84	3	114	40	20	10	28	1.86
43597783--43597948	23	7.1	23	89	2	260	28	21	22	27	1.99
43597781--43597948	47	3.6	47	92	0	275	27	22	22	27	1.99
43597783--43597950	70	2.4	71	91	2	268	27	21	22	27	1.99
43597995--43598045	20	2.5	20	93	0	84	31	21	11	35	1.90
43598082--43598129	25	1.9	25	91	0	78	25	14	25	35	1.94
43599176--43599240	27	2.4	27	84	5	87	20	24	20	35	1.96
43599294--43599345	27	1.9	27	88	7	79	36	11	11	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43599302--43599496	27	7.1	27	75	8	117	33	8	18	38	1.81
43599457--43599766	27	11.5	27	76	15	184	41	7	23	27	1.80
43599448--43599766	54	5.9	54	79	7	335	41	6	23	28	1.80
43599457--43599766	81	3.8	80	90	2	410	41	7	23	27	1.80
43599492--43599766	81	3.4	81	92	2	462	40	6	24	28	1.81
43599755--43599861	27	4.0	27	81	4	128	31	10	20	37	1.86
43599772--43599876	27	3.9	27	75	9	72	34	9	18	38	1.83
43602746--43602837	42	2.2	42	86	3	123	40	21	10	27	1.87
43602979--43603142	23	7.0	23	90	2	265	28	21	23	26	1.99
43602977--43603142	47	3.6	47	94	0	280	27	22	22	27	1.99
43602979--43603142	70	2.3	69	91	3	265	28	21	23	26	1.99
43603203--43603259	9	5.9	9	73	15	51	35	21	8	35	1.84
43603191--43603261	20	3.5	20	94	0	124	32	21	11	35	1.89
43603196--43603250	11	5.4	11	70	16	55	30	20	12	36	1.90
43603298--43603345	25	1.9	25	91	0	78	25	14	25	35	1.94
43604392--43604456	27	2.4	27	84	5	87	20	24	20	35	1.96
43604518--43604685	27	6.1	27	75	10	110	31	8	19	41	1.81
43604664--43604982	27	11.8	27	80	2	336	40	7	24	27	1.82
43604665--43604982	81	3.9	81	92	1	496	40	7	23	27	1.82
43604971--43605077	27	4.0	27	81	2	126	31	10	20	37	1.86
43608800--43608873	28	2.6	29	80	2	87	21	36	20	21	1.95
43616644--43616746	29	3.6	29	78	1	91	23	34	18	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43622783--43622912	40	3.2	40	82	4	165	23	28	24	23	2.00
43626827--43626880	26	2.0	27	82	10	67	33	14	9	42	1.78
43635951--43636013	30	2.1	30	93	0	108	23	23	15	36	1.94
43636219--43636276	24	2.4	24	94	2	98	27	22	18	31	1.97
43636325--43636390	20	3.3	20	93	2	116	33	19	12	34	1.89
43636325--43636380	11	5.5	11	71	16	57	32	19	12	35	1.89
43636427--43636474	25	1.9	25	86	0	69	25	16	25	33	1.96
43642409--43642614	53	3.8	54	76	3	200	20	24	17	37	1.94
43647982--43648253	50	5.6	47	79	8	219	26	29	16	27	1.97
43647998--43648267	95	2.8	96	82	5	301	27	29	15	27	1.96
43648030--43648264	50	4.8	50	82	5	257	26	29	15	28	1.96
43652148--43652319	40	4.3	40	80	5	197	25	20	25	27	1.99
43656646--43656725	29	2.7	29	86	5	108	27	32	15	25	1.95
43658486--43658524	20	2.0	20	89	0	60	48	2	12	35	1.55
43659905--43660111	27	7.7	27	74	6	134	36	20	10	32	1.86
43660098--43660326	27	8.5	27	86	3	300	36	20	20	22	1.95
43660589--43660640	27	2.0	26	84	3	68	17	26	21	34	1.95
43660679--43660738	27	2.3	26	82	2	66	21	21	20	36	1.95
43660861--43661011	57	2.6	57	79	12	175	29	19	21	29	1.97
43668053--43668162	43	2.6	42	71	16	100	31	29	19	20	1.96
43676869--43676908	21	1.9	21	94	0	71	37	17	0	45	1.49
43681506--43681872	47	7.7	49	91	6	576	32	7	30	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43681506--43681872	95	3.9	96	92	3	591	32	7	30	29	1.86
43685390--43685420	11	2.8	11	95	0	53	38	6	19	35	1.77
43687941--43688123	39	4.6	39	86	0	231	24	21	30	23	1.99
43693091--43693225	46	3.1	44	84	8	168	28	20	28	22	1.98
43696982--43697022	15	2.7	16	75	25	52	17	7	14	60	1.55
43699591--43699809	46	4.8	45	72	10	151	28	21	26	23	1.99
43706762--43706805	19	2.4	19	85	7	56	50	0	9	40	1.34
43708619--43708687	28	2.5	28	95	2	122	43	27	10	18	1.82
43715739--43716252	27	19.1	27	86	1	683	36	19	19	25	1.95
43716544--43716581	20	1.9	20	94	0	67	13	13	31	42	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292