genome.fa.s9.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  121  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36463516--36463624	40	2.7	41	75	2	130	27	26	23	22	1.99
36468167--36468339	46	3.7	46	77	10	190	23	20	26	29	1.99
36468164--36468334	93	1.8	93	92	0	288	22	21	27	28	1.99
36468563--36468600	19	2.0	20	85	15	53	36	0	23	39	1.55
36476171--36476437	27	9.5	27	76	9	194	30	22	7	40	1.81
36476240--36476365	64	2.0	65	88	1	191	27	26	6	38	1.81
36476268--36476348	38	2.2	37	86	2	108	24	30	6	38	1.80
36476308--36476638	27	12.2	27	77	9	140	36	20	8	34	1.83
36476305--36476463	81	2.0	81	81	2	185	33	20	7	38	1.81
36476389--36476582	81	2.4	80	78	10	198	39	21	8	31	1.83
36478008--36478070	20	3.2	20	97	0	117	36	14	19	30	1.91
36478125--36478290	24	7.0	24	89	4	239	28	23	21	25	1.99
36478125--36478291	47	3.5	48	89	4	241	29	23	21	25	1.99
36478125--36478290	71	2.3	71	90	3	253	28	23	21	25	1.99
36478484--36478547	31	2.1	31	84	0	83	34	14	25	26	1.94
36484893--36484956	31	2.1	31	90	0	101	25	23	15	35	1.94
36485170--36485309	23	6.1	23	88	2	185	28	20	22	28	1.98
36485168--36485310	47	3.1	45	83	8	173	27	20	22	29	1.98
36485360--36485426	20	3.3	20	93	0	116	32	20	11	34	1.90
36485360--36485415	11	5.5	11	71	16	57	32	19	12	35	1.89
36485463--36485510	25	1.9	25	86	0	69	25	16	25	33	1.96
36499568--36499728	29	5.6	29	85	2	96	25	31	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36503106--36503172	33	2.0	33	100	0	134	23	32	20	22	1.98
36509027--36509187	29	5.6	29	85	2	96	25	32	16	26	1.96
36513860--36513960	28	3.5	29	86	6	125	29	27	13	28	1.95
36521670--36521740	29	2.5	29	90	6	110	29	28	14	28	1.95
36524607--36524637	15	2.1	15	100	0	62	51	12	6	29	1.65
36528627--36528764	54	2.6	52	84	5	159	22	22	19	35	1.96
36528749--36528911	47	3.5	47	92	4	267	26	24	13	35	1.92
36528892--36528948	28	2.0	28	80	12	64	19	19	21	40	1.92
36529792--36529824	17	1.9	17	88	11	50	21	6	12	60	1.53
36530888--36530983	25	3.7	26	94	4	160	27	23	21	27	1.99
36531033--36531079	20	2.3	20	92	7	78	34	19	10	36	1.86
36531158--36531205	19	2.5	19	100	0	96	45	6	8	39	1.59
36535276--36535332	27	2.1	27	86	0	78	29	14	14	42	1.84
36535300--36535434	54	2.5	53	77	9	130	31	9	22	36	1.87
36535316--36535434	27	4.4	27	78	4	107	30	8	25	36	1.85
36542341--36542379	21	1.9	20	89	5	60	46	20	0	33	1.51
36550329--36550482	27	5.5	27	82	4	173	28	14	25	31	1.95
36550379--36550482	55	1.9	55	100	0	208	26	13	24	35	1.92
36558158--36558311	27	5.5	27	82	4	173	28	14	25	31	1.95
36558208--36558311	55	1.9	55	100	0	208	26	13	24	35	1.92
36560461--36560572	56	2.1	53	81	11	129	37	17	16	27	1.92
36561761--36561926	40	4.2	40	78	8	153	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36568128--36568294	40	4.2	40	82	2	185	25	27	21	25	1.99
36568128--36568294	80	2.1	79	83	7	205	25	27	21	25	1.99
36569120--36569165	17	2.5	19	74	22	53	34	23	17	23	1.96
36570954--36571022	29	2.4	29	92	0	120	17	20	34	27	1.95
36573049--36573113	28	2.3	28	94	0	112	33	27	7	30	1.85
36573217--36573306	28	3.2	27	84	10	103	18	23	24	33	1.97
36573217--36573331	55	2.1	56	80	11	130	18	23	22	35	1.95
36579724--36579788	28	2.3	28	94	0	112	33	27	7	30	1.85
36579894--36579983	28	3.2	27	84	7	110	20	25	23	31	1.98
36579906--36579994	27	3.2	28	80	4	72	23	28	17	30	1.97
36579894--36580008	55	2.1	56	80	8	128	20	25	20	33	1.97
36582329--36582492	71	2.3	71	97	0	310	18	28	17	35	1.94
36582329--36582526	71	2.8	70	90	3	267	20	28	17	33	1.95
36584126--36584163	20	1.9	20	84	10	51	44	2	28	23	1.67
36585313--36585353	20	2.0	20	86	9	57	36	9	7	46	1.65
36587206--36587533	48	6.8	48	78	7	317	29	18	28	23	1.98
36587206--36587527	96	3.4	96	79	6	357	29	18	28	23	1.98
36587202--36587527	144	2.3	144	83	5	401	29	18	28	23	1.98
36590600--36590732	48	2.8	48	80	6	171	36	27	15	19	1.93
36595130--36595224	40	2.4	39	80	7	102	26	27	16	29	1.97
36599477--36599592	27	4.3	26	80	8	117	20	22	21	35	1.96
36604526--36604786	48	5.4	48	95	0	459	33	8	28	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36604959--36605061	37	2.8	37	90	0	161	22	19	31	27	1.98
36606347--36606692	40	8.8	40	91	4	490	19	21	30	27	1.98
36610164--36610617	48	9.5	48	95	0	777	34	7	28	29	1.85
36610164--36610617	190	2.4	192	94	0	786	34	7	28	29	1.85
36610787--36610889	37	2.8	37	96	0	188	23	20	32	24	1.98
36611299--36611354	28	2.0	28	100	0	112	39	17	10	32	1.84
36612958--36613047	28	3.3	28	87	7	123	20	23	22	34	1.97
36612957--36613071	27	4.3	26	84	9	133	20	22	21	35	1.96
36616836--36616924	27	3.3	28	79	6	94	40	17	8	32	1.81
36616931--36617338	27	14.8	27	83	6	374	28	23	7	40	1.82
36616931--36617337	81	4.9	81	83	8	471	28	23	7	40	1.82
36617236--36617484	27	9.1	27	80	7	137	37	18	8	35	1.81
36617441--36617492	27	1.9	27	88	7	79	40	11	11	36	1.78
36617555--36617610	27	2.1	27	86	6	78	32	23	23	21	1.98
36618768--36618815	25	1.9	25	86	0	69	33	25	16	25	1.96
36618859--36618917	20	3.0	20	92	0	100	35	11	20	32	1.89
36618968--36619086	24	5.0	24	88	5	170	28	21	22	26	1.99
36618968--36619086	47	2.5	48	89	5	170	28	21	22	26	1.99
36619278--36619372	31	3.1	31	98	0	181	38	15	22	23	1.92
36621764--36621853	27	3.3	28	81	6	105	38	18	10	32	1.84
36621788--36621863	27	2.8	26	76	7	80	38	19	10	31	1.86
36621864--36622168	27	11.3	27	83	7	345	27	24	7	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36621870--36622168	164	1.8	165	93	3	523	27	25	7	40	1.82
36622141--36622179	20	2.0	20	95	5	71	20	20	10	48	1.78
36622145--36622187	20	2.2	20	91	4	70	18	23	9	48	1.76
36622174--36622341	27	6.1	27	72	14	85	41	20	8	30	1.81
36622118--36622208	47	1.9	47	84	0	119	26	23	8	41	1.83
36622298--36622349	27	1.9	27	88	7	79	40	11	11	36	1.78
36622419--36622469	26	2.0	26	84	3	68	31	21	23	23	1.98
36623621--36623668	25	1.9	25	86	0	69	33	25	16	25	1.96
36623712--36623770	20	3.0	20	92	0	100	35	11	20	32	1.89
36623821--36623939	24	5.0	24	84	9	154	28	21	22	27	1.99
36624131--36624223	31	3.1	31	92	6	163	38	15	22	23	1.92
36627882--36627930	17	2.8	18	74	22	50	24	18	22	34	1.96
36628753--36628919	40	4.2	40	79	6	169	25	21	27	25	1.99
36631029--36631122	43	2.2	42	84	5	134	28	14	22	34	1.94
36632092--36632206	55	2.1	56	83	8	146	34	21	24	19	1.96
36632117--36632206	27	3.2	27	85	7	119	32	23	24	20	1.98
36632312--36632376	28	2.3	28	94	0	112	30	7	27	33	1.85
36634413--36634481	29	2.4	29	92	0	120	27	34	20	17	1.95
36636205--36636356	43	3.5	43	76	5	146	26	17	25	30	1.97
36638027--36638197	93	1.8	93	93	2	299	28	29	21	21	1.98
36638019--36638199	46	3.9	46	79	11	217	28	29	20	21	1.98
36641944--36641969	13	2.0	13	100	0	52	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36642622--36642669	24	2.0	24	100	0	96	41	12	16	29	1.85
36649097--36649290	40	4.9	39	86	1	244	24	20	30	24	1.98
36649108--36649259	79	1.9	79	91	2	252	25	20	30	24	1.99
36658052--36658238	71	2.7	68	93	5	281	18	28	18	34	1.95
36658075--36658238	71	2.3	71	100	0	328	18	28	17	35	1.94
36658075--36658272	71	2.8	70	92	3	276	20	28	17	33	1.95
36665620--36665806	71	2.7	68	93	5	281	18	28	18	34	1.95
36665643--36665806	71	2.3	71	100	0	328	18	28	17	35	1.94
36665643--36665840	71	2.8	70	92	3	276	20	28	17	33	1.95
36667712--36667897	53	3.5	53	75	5	142	21	23	18	37	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292