genome.fa.s9.2.7.7.80.10.50.1000.289.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  289  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83458550--83458707	83	1.9	83	92	5	266	41	16	10	31	1.82
83468206--83468232	14	1.9	14	100	0	54	44	3	0	51	1.19
83471561--83471963	195	2.0	195	83	7	503	48	16	10	23	1.78
83477696--83477740	22	2.0	22	82	0	54	24	4	4	66	1.29
83478823--83479050	99	2.3	97	79	13	225	45	1	2	50	1.23
83478834--83479056	100	2.2	99	81	11	245	45	1	2	51	1.22
83479157--83479196	18	2.2	18	95	0	71	22	35	5	37	1.76
83479240--83479267	14	2.0	14	100	0	56	42	21	0	35	1.53
83479985--83480045	31	2.0	31	96	0	113	36	19	18	26	1.94
83494014--83494058	19	2.4	20	78	14	51	60	11	2	26	1.42
83502623--83502665	21	2.1	21	91	4	70	34	11	0	53	1.37
83509550--83509619	28	2.4	29	82	15	92	48	2	0	48	1.16
83521143--83522251	266	4.0	273	81	11	1131	45	18	11	24	1.83
83525427--83525486	31	1.9	32	93	3	104	60	0	3	36	1.14
83528267--83528310	5	8.0	5	85	14	52	77	4	0	18	0.94
83528267--83528321	11	4.9	11	80	12	58	78	7	0	14	0.96
83528267--83528328	22	2.8	22	87	2	79	77	8	0	14	0.98
83528268--83528316	6	8.5	6	88	4	57	79	6	0	14	0.91
83535121--83535182	31	2.0	31	84	6	81	37	14	9	38	1.79
83536542--83536574	16	2.0	17	94	5	59	63	0	0	36	0.95
83536622--83536677	25	2.2	25	78	6	60	58	0	0	41	0.98
83536635--83536676	15	2.6	16	85	14	59	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83537543--83537585	16	2.7	16	82	7	52	27	13	16	41	1.86
83542008--83542051	23	1.9	23	100	0	88	29	9	11	50	1.69
83546358--83546415	30	1.9	30	100	0	116	36	18	6	37	1.78
83548006--83548031	2	13.0	2	100	0	52	50	0	0	50	1.00
83556867--83556899	16	2.1	16	94	0	57	27	9	12	51	1.69
83559077--83559124	22	2.2	21	89	7	78	41	27	18	12	1.86
83561789--83561821	17	1.9	17	93	0	57	42	24	3	30	1.70
83564174--83564641	138	3.4	135	77	10	450	27	15	21	36	1.93
83565213--83565271	24	2.6	22	89	10	68	40	5	15	38	1.69
83565221--83565271	24	2.1	24	100	0	102	43	3	13	39	1.63
83576631--83576722	47	2.1	43	75	19	100	40	10	10	38	1.75
83576650--83576744	47	2.0	47	100	0	190	37	8	14	38	1.77
83579758--83579848	33	2.8	33	91	0	155	30	42	8	17	1.80
83582616--83582665	25	2.0	25	100	0	100	40	20	20	20	1.92
83586011--83586054	23	1.9	23	90	0	70	56	15	6	20	1.62
83603347--83603376	11	2.7	11	89	0	51	60	0	0	40	0.97
83603906--83603944	17	2.3	17	86	8	53	71	0	10	17	1.12
83611024--83611137	35	3.3	35	79	0	120	28	7	20	42	1.80
83614078--83614118	19	2.2	19	100	0	82	63	9	0	26	1.25
83617997--83618043	24	2.0	25	88	12	73	68	4	0	27	1.08
83621736--83621768	17	1.9	17	88	11	50	36	0	0	63	0.95
83621734--83621784	26	2.0	26	84	7	68	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83625736--83625772	3	12.3	3	100	0	74	64	0	0	35	0.94
83634212--83634242	16	1.9	16	93	0	53	32	0	9	58	1.31
83638928--83638978	24	2.1	24	82	13	61	35	0	13	50	1.42
83645506--83645553	16	3.0	16	82	11	62	54	8	2	35	1.42
83645944--83645971	2	14.0	2	100	0	56	50	0	0	50	1.00
83650652--83650678	6	4.5	6	100	0	54	18	33	48	0	1.49
83656161--83656218	27	2.1	29	84	9	77	53	5	6	34	1.50
83656812--83656876	23	2.9	21	80	19	69	35	1	3	60	1.22
83656846--83656944	53	1.9	51	81	4	117	33	5	9	52	1.55
83657106--83657145	16	2.5	16	88	8	55	32	5	12	50	1.62
83657268--83657297	2	15.0	2	92	0	51	46	0	0	53	1.00
83659497--83659543	24	2.0	24	86	0	67	12	55	8	23	1.64
83659504--83659581	24	3.2	24	76	8	61	21	56	7	14	1.63
83660190--83660262	32	2.3	31	77	15	78	42	1	5	50	1.34
83660192--83660256	31	2.1	30	83	11	78	41	1	6	50	1.36
83661942--83662081	9	15.2	9	68	10	59	22	60	3	12	1.48
83661981--83662069	24	3.5	24	64	16	61	20	59	3	16	1.51
83662035--83662135	42	2.4	42	81	6	123	21	59	7	10	1.56
83662143--83662376	24	9.5	24	67	18	133	22	58	8	10	1.58
83662114--83662208	30	3.2	30	73	11	86	23	57	8	10	1.59
83662191--83662243	21	2.5	21	72	6	54	28	56	3	11	1.51
83662108--83662376	48	5.4	48	74	12	166	22	57	8	10	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83665152--83665274	61	2.0	61	98	0	237	35	21	7	35	1.81
83670450--83670521	16	4.6	16	84	1	92	27	23	5	43	1.76
83677654--83677720	23	2.8	23	70	19	57	46	1	0	52	1.09
83678139--83678176	2	19.0	2	100	0	76	50	0	0	50	1.00
83680734--83680758	6	4.2	6	100	0	50	84	16	0	0	0.63
83681251--83681308	30	1.9	31	92	3	100	55	8	5	31	1.52
83689459--83689491	18	1.9	18	88	11	52	33	0	12	54	1.37
83699475--83699613	73	1.9	73	88	2	208	24	14	20	40	1.90
83731606--83731630	13	1.9	13	100	0	50	24	8	20	48	1.76
83742113--83742170	6	9.3	6	88	7	80	77	5	0	17	0.94
83742189--83742247	9	6.6	9	82	0	64	30	6	16	45	1.74
83742189--83742247	18	3.3	18	87	0	82	30	6	16	45	1.74
83743163--83743207	4	11.2	4	100	0	90	48	26	0	24	1.51
83747029--83747294	95	2.8	92	75	9	232	34	17	24	23	1.96
83747169--83747284	47	2.5	47	95	0	205	36	13	24	25	1.92
83747263--83747579	55	5.8	54	80	6	336	36	16	23	23	1.94
83747270--83747579	109	2.8	109	90	1	469	35	17	23	23	1.95
83751710--83751884	46	3.8	45	76	7	190	28	29	20	22	1.98
83751718--83751889	93	1.8	93	92	0	290	27	29	20	22	1.98
83751715--83751904	46	4.1	46	70	15	133	28	28	20	22	1.98
83754262--83754311	15	3.4	15	86	2	66	60	12	18	10	1.59
83754273--83754320	15	3.2	15	79	5	53	56	14	16	12	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83757236--83757408	94	1.8	93	95	1	310	27	29	21	21	1.98
83757228--83757404	47	3.8	46	79	11	216	28	28	20	21	1.98
83767565--83767606	3	14.0	3	100	0	84	33	0	0	66	0.92
83787946--83788197	134	1.9	131	86	4	353	26	11	12	50	1.73
83787994--83788411	215	1.9	220	84	4	569	23	11	13	50	1.74
83788216--83789111	129	6.9	128	78	8	886	27	9	14	48	1.75
83787783--83788684	472	1.9	474	80	7	1042	26	10	13	49	1.74
83790518--83790784	132	2.0	132	97	0	507	37	9	9	43	1.70
83790930--83790993	32	2.0	32	84	0	83	39	12	23	25	1.90
83791605--83792989	199	6.9	198	83	5	1504	28	19	21	30	1.97
83791608--83792959	598	2.3	587	81	6	1545	28	19	20	30	1.97
83795252--83795283	16	2.0	16	100	0	64	25	18	6	50	1.70
83800534--83800613	40	2.0	40	87	0	115	42	3	25	28	1.72
83802920--83802970	25	2.0	25	100	0	102	31	3	19	45	1.69
83807970--83808023	20	2.7	20	80	16	58	31	0	12	55	1.38
83820068--83820101	15	2.2	16	89	5	52	82	0	14	2	0.79
83824063--83824093	3	10.3	3	100	0	62	32	0	0	67	0.91
83824931--83824955	12	2.1	12	100	0	50	24	36	24	16	1.94
83826667--83826719	26	2.0	27	85	7	74	24	15	22	37	1.92
83828197--83828306	26	4.2	26	93	4	170	37	23	4	34	1.75
83831951--83832003	15	3.5	15	81	0	70	49	11	1	37	1.50
83832910--83832958	13	3.7	13	79	20	57	0	16	6	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83832917--83832959	23	1.9	22	86	13	61	0	16	4	79	0.90
83833616--83833647	13	2.4	13	94	5	55	43	3	0	53	1.16
83837057--83837086	12	2.5	12	100	0	60	13	13	53	20	1.72
83842890--83842948	28	2.1	28	100	0	118	30	11	16	40	1.85
83843141--83843436	150	2.0	150	99	0	583	25	14	19	41	1.88
83843934--83844051	54	2.2	54	100	0	200	27	16	33	22	1.96
83846713--83846750	19	2.0	19	100	0	76	26	10	15	47	1.78
83849608--83849640	11	3.1	11	86	8	50	66	0	0	33	0.92
83851285--83851353	31	2.1	32	89	7	104	46	7	33	13	1.70
83852473--83852502	12	2.5	12	100	0	60	13	13	53	20	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292