genome.fa.s9.2.7.7.80.10.50.1000.181.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  181  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53903977--53904014	20	1.9	20	100	0	76	68	0	0	31	0.90
53904210--53904257	23	2.1	23	84	7	62	37	0	2	60	1.09
53904595--53904624	9	3.4	9	95	4	53	16	0	0	83	0.65
53909186--53909352	48	3.5	48	89	0	235	26	28	17	26	1.98
53914311--53914536	40	5.7	40	96	1	382	22	20	27	29	1.98
53914315--53914572	40	6.5	40	93	2	369	22	21	27	28	1.99
53922380--53922605	40	5.7	40	92	1	346	23	20	26	29	1.99
53922384--53922641	40	6.5	40	90	2	333	22	21	26	29	1.99
53922384--53922641	120	2.2	120	87	3	369	22	21	26	29	1.99
53931674--53931730	20	2.8	20	97	2	105	17	31	40	10	1.84
53932952--53933366	48	8.7	48	80	2	359	24	29	18	27	1.98
53932952--53933366	191	2.2	192	81	3	478	24	29	18	27	1.98
53940740--53941104	48	7.6	48	74	8	267	24	28	17	29	1.97
53940783--53941117	96	3.5	96	76	6	327	25	28	17	29	1.97
53940740--53941117	144	2.6	144	82	3	465	25	28	17	28	1.97
53940783--53941107	48	6.8	48	77	5	291	24	28	18	29	1.98
53947062--53947118	24	2.3	25	93	3	98	59	17	0	22	1.37
53948460--53948505	19	2.3	20	88	3	67	65	0	0	34	0.93
53948447--53948507	28	2.1	29	84	3	79	67	0	0	32	0.91
53948455--53948511	19	2.8	20	76	10	62	63	0	0	36	0.95
53948701--53948731	2	15.5	2	100	0	62	51	0	0	48	1.00
53949409--53949433	7	3.6	7	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53949473--53949546	27	2.7	27	82	2	76	33	1	0	64	1.02
53949855--53949900	24	1.9	24	86	0	65	43	4	17	34	1.69
53950123--53950194	23	3.2	22	75	9	74	61	1	2	34	1.19
53950147--53950212	32	2.1	32	83	11	82	62	3	4	30	1.30
53950361--53950422	30	2.1	30	90	3	99	56	4	14	24	1.58
53979292--53979320	14	2.1	14	100	0	58	65	20	0	13	1.26
53980366--53980432	5	12.6	5	79	17	73	5	17	0	76	0.99
53980976--53981138	63	2.6	63	79	1	193	22	21	28	26	1.99
53994051--53994083	13	2.6	13	90	4	50	39	0	12	48	1.40
53994364--53994389	5	5.2	5	100	0	52	42	0	0	57	0.98
53999483--53999536	18	3.2	17	79	7	56	14	7	1	75	1.09
54002426--54002458	13	2.6	13	90	4	50	39	0	12	48	1.40
54006849--54006899	21	2.4	22	87	12	79	60	5	1	31	1.31
54006992--54007028	16	2.3	17	81	13	51	59	0	2	37	1.12
54015935--54016034	34	2.9	34	83	0	119	33	22	20	25	1.97
54023359--54023399	14	2.9	15	75	10	50	60	7	2	29	1.36
54025121--54025165	18	2.5	18	85	7	56	48	0	4	46	1.22
54025716--54025754	20	2.0	20	84	0	51	58	7	0	33	1.26
54031577--54031762	104	1.8	105	89	3	288	51	5	3	39	1.42
54043031--54043079	25	2.0	25	83	0	62	48	10	6	34	1.62
54046081--54046210	40	3.2	40	76	4	129	24	24	27	23	2.00
54054070--54054220	40	3.8	40	77	13	134	27	23	26	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54054107--54054236	40	3.2	40	77	4	138	24	23	27	23	2.00
54058569--54058701	50	2.7	50	88	3	189	24	16	30	29	1.96
54061387--54061425	15	2.5	15	91	4	60	15	12	15	56	1.68
54063465--54063521	30	1.9	30	85	7	80	36	8	26	28	1.86
54064168--54064300	50	2.7	50	88	3	189	24	17	29	29	1.97
54065606--54065645	16	2.5	16	95	0	71	35	27	30	7	1.84
54066050--54066182	62	2.1	62	90	2	205	22	25	24	27	2.00
54076489--54076612	39	3.2	39	91	4	196	24	19	30	25	1.98
54078480--54078517	12	3.4	11	82	17	51	63	0	2	34	1.09
54082591--54082707	38	3.1	38	80	4	112	33	17	17	32	1.93
54082799--54082865	22	3.0	22	71	14	66	34	23	16	25	1.95
54084403--54084575	91	1.9	91	84	2	231	37	13	20	27	1.91
54094281--54094330	26	1.9	26	87	0	73	30	24	24	22	1.99
54095915--54095959	23	2.0	23	90	0	72	13	42	4	40	1.64
54107225--54107271	24	2.0	24	86	0	67	14	36	4	44	1.65
54112216--54112988	268	3.0	252	88	6	1161	31	10	19	38	1.86
54123257--54123432	46	3.8	46	79	12	216	20	21	29	28	1.98
54123254--54123425	93	1.8	93	96	0	317	20	21	29	27	1.98
54130778--54130906	46	2.8	46	95	0	222	19	21	29	29	1.98
54136665--54136749	24	3.5	24	96	0	161	21	17	24	36	1.94
54136665--54136772	48	2.2	48	90	3	164	25	16	23	35	1.95
54144237--54144321	38	2.3	38	83	2	100	36	15	11	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54144823--54145048	113	2.0	113	98	0	434	33	21	15	30	1.94
54146341--54146423	29	2.9	30	80	8	93	61	8	15	14	1.55
54146341--54146701	28	13.1	28	70	11	97	57	6	15	20	1.61
54146541--54146584	23	1.9	23	85	0	61	61	9	9	20	1.53
54146592--54146702	56	2.0	54	85	3	150	55	1	17	25	1.51
54149121--54149193	26	2.8	26	85	0	83	30	16	10	42	1.82
54149342--54149376	6	5.8	6	89	0	52	20	25	0	54	1.45
54149342--54149376	18	1.9	18	94	0	61	20	25	0	54	1.45
54158164--54158199	2	18.0	2	100	0	72	50	0	0	50	1.00
54162840--54162892	21	2.3	24	75	18	58	39	3	5	50	1.44
54163394--54163426	14	2.2	16	89	10	52	42	3	6	48	1.43
54166721--54166800	23	3.5	23	96	1	144	30	8	21	40	1.83
54167122--54167178	26	2.2	26	84	15	82	49	17	10	22	1.77
54167140--54167181	20	2.1	20	82	8	50	47	16	9	26	1.77
54167594--54167629	18	2.0	18	88	0	54	11	38	33	16	1.84
54168278--54168324	15	2.9	16	87	9	60	76	2	8	12	1.09
54169396--54169454	25	2.6	22	78	17	68	38	10	13	37	1.79
54174544--54174569	5	5.2	5	100	0	52	0	19	0	80	0.71
54177361--54177443	42	2.0	42	97	0	157	26	21	1	50	1.56
54181761--54181916	43	3.7	42	78	4	152	33	26	14	25	1.95
54183651--54184209	277	2.0	275	94	2	978	39	10	18	31	1.85
54184429--54184468	20	2.0	20	100	0	80	40	15	0	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54189835--54189947	58	2.0	57	98	1	217	49	7	15	28	1.70
54197680--54197782	50	2.1	50	96	0	188	42	11	15	30	1.82
54208504--54208563	13	4.7	13	74	15	54	58	3	1	36	1.25
54208518--54208579	12	5.0	12	77	14	63	53	6	4	35	1.48
54208498--54208575	38	2.1	38	95	0	138	56	5	2	35	1.35
54209120--54209183	23	2.7	23	87	2	92	40	12	12	34	1.81
54209128--54209166	12	3.3	12	78	7	53	41	15	12	30	1.85
54210763--54210804	22	1.9	22	90	0	66	45	9	7	38	1.64
54219939--54219987	25	2.0	25	91	0	80	26	24	8	40	1.83
54230243--54230270	13	2.2	13	100	0	56	39	7	21	32	1.80
54231961--54232158	98	2.0	98	97	0	369	44	15	7	33	1.73
54232805--54232843	2	19.5	2	89	0	60	43	0	5	51	1.24
54234751--54234852	29	3.6	28	89	4	141	27	14	31	26	1.95
54236679--54236744	31	2.1	31	88	0	96	53	21	10	15	1.72
54237452--54237480	13	2.1	14	93	6	51	55	10	0	34	1.34
54242540--54242957	9	45.7	9	67	17	132	36	2	15	45	1.60
54242544--54242944	16	25.0	16	66	20	135	36	2	15	45	1.60
54242559--54242862	46	6.7	46	78	15	328	35	2	15	46	1.61
54242623--54242800	82	2.2	81	94	1	311	37	2	14	45	1.60
54242786--54242944	80	2.0	78	91	2	255	36	2	15	45	1.60
54242671--54242842	31	5.5	30	72	17	102	37	3	14	44	1.62
54242977--54243010	17	2.0	17	100	0	68	35	5	5	52	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54244449--54244482	14	2.4	14	95	5	59	35	11	0	52	1.38
54245449--54245524	27	2.8	27	74	7	82	39	23	7	28	1.83
54245516--54245650	27	5.0	27	86	0	180	35	20	20	23	1.96
54245509--54245650	54	2.6	54	88	0	212	35	19	19	25	1.95
54245974--54246040	27	2.5	27	82	2	82	23	22	26	26	2.00
54246039--54246104	32	2.1	32	97	0	123	28	10	15	45	1.79
54246195--54246257	22	2.9	22	79	13	76	15	23	25	34	1.95
54246324--54246404	27	3.0	27	84	8	103	18	23	20	37	1.94
54246522--54246626	6	16.8	6	69	21	65	19	18	15	47	1.83
54246522--54246586	25	2.6	25	83	9	87	21	18	13	46	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292