genome.fa.s9.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  113  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34414982--34415113	29	4.5	29	97	1	246	24	24	14	37	1.92
34414982--34415113	59	2.3	59	97	1	248	24	24	14	37	1.92
34416414--34416449	18	1.9	18	88	5	54	11	25	0	63	1.27
34418474--34418627	27	5.5	27	82	4	164	31	25	14	28	1.95
34418474--34418627	29	5.5	28	81	6	145	31	25	14	28	1.95
34418474--34418577	55	1.9	55	100	0	208	35	24	13	26	1.92
34419261--34419294	2	17.0	2	93	0	59	47	0	2	50	1.16
34422143--34422202	31	1.9	31	89	0	93	50	11	8	30	1.68
34426228--34426432	102	2.0	102	100	0	410	31	23	13	31	1.93
34433432--34433481	15	3.3	15	83	11	57	52	0	18	30	1.46
34433436--34433481	7	6.1	7	87	5	56	52	0	17	30	1.45
34443495--34443542	25	1.9	25	86	0	69	33	25	16	25	1.96
34443586--34443644	20	3.0	20	97	0	109	37	10	20	32	1.86
34443590--34443644	11	5.4	11	70	16	55	38	10	20	30	1.87
34443695--34443813	24	5.0	24	86	5	161	27	22	22	26	1.99
34443697--34443788	47	2.0	47	93	0	157	25	23	22	28	2.00
34444010--34444098	31	2.9	31	94	0	151	40	14	20	24	1.90
34456770--34456841	28	2.6	26	76	10	63	26	8	9	55	1.60
34459635--34459805	93	1.8	93	91	0	279	28	28	20	22	1.98
34459630--34459802	46	3.7	46	78	10	190	29	27	20	22	1.98
34459680--34459821	46	3.1	45	73	18	123	28	28	19	23	1.99
34460227--34460286	30	2.0	30	86	0	84	33	25	5	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34471837--34471900	29	2.2	29	82	0	74	29	17	32	20	1.95
34472970--34473004	18	2.0	18	88	5	54	37	20	14	28	1.91
34472197--34475567	843	4.0	844	95	1	5850	27	14	23	34	1.93
34477754--34477791	18	2.1	18	85	9	51	23	31	2	42	1.68
34479561--34479690	40	3.2	40	77	13	142	24	26	24	23	2.00
34479577--34479727	40	3.8	40	80	6	155	22	27	23	26	2.00
34479577--34479727	80	1.9	79	83	6	198	22	27	23	26	2.00
34486072--34486250	27	6.7	27	88	1	245	41	20	7	30	1.79
34486072--34486304	81	2.9	81	82	5	233	40	21	8	30	1.82
34486234--34486308	27	2.8	27	87	4	107	38	24	10	26	1.88
34486300--34486645	27	12.8	27	88	2	392	28	22	8	40	1.82
34486124--34486377	54	4.7	54	80	4	149	36	21	9	32	1.86
34486327--34486689	81	4.5	81	81	6	214	29	22	8	39	1.83
34487489--34487536	25	1.9	25	86	0	69	33	25	16	25	1.96
34487580--34487638	20	3.0	20	92	0	100	35	11	20	32	1.89
34487688--34487830	24	6.0	24	91	4	209	28	22	22	26	1.99
34487688--34487830	47	3.0	47	90	5	207	28	22	22	26	1.99
34487688--34487831	71	2.0	72	89	4	220	29	22	22	26	1.99
34488022--34488116	31	3.1	31	98	0	181	38	15	22	23	1.92
34490923--34491101	27	6.7	27	88	1	245	41	20	7	30	1.79
34490923--34491155	81	2.9	81	82	5	233	40	21	8	30	1.82
34491085--34491159	27	2.8	27	87	4	107	38	24	10	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34490975--34491282	54	5.7	54	81	5	144	35	21	9	34	1.86
34491151--34491496	27	12.8	27	88	2	419	28	22	8	40	1.82
34491209--34491540	81	4.1	81	80	6	215	29	22	8	39	1.83
34492395--34492442	25	1.9	25	86	0	69	33	25	16	25	1.96
34492486--34492544	20	3.0	20	92	0	100	35	11	20	32	1.89
34492595--34492688	24	4.0	24	98	1	181	29	23	21	25	1.99
34492643--34492749	55	1.9	54	85	10	146	29	18	22	28	1.97
34492937--34493031	31	3.1	31	98	0	181	38	15	22	23	1.92
34496260--34496411	40	3.8	39	81	6	153	21	26	25	26	2.00
34499965--34500073	42	2.6	41	80	11	123	28	24	17	29	1.97
34501870--34501911	20	2.2	20	91	8	70	26	19	2	52	1.58
34507516--34507646	47	2.8	49	81	11	166	25	16	31	26	1.97
34515210--34515269	28	2.1	29	82	14	72	26	16	3	53	1.59
34516045--34516088	18	2.4	18	84	3	61	45	11	15	27	1.81
34518031--34518070	18	2.1	19	86	13	55	45	5	0	50	1.23
34521319--34521449	27	4.8	27	90	1	190	22	15	21	40	1.90
34525492--34525623	29	4.5	29	97	1	246	24	24	14	37	1.92
34525492--34525623	59	2.3	59	97	1	248	24	24	14	37	1.92
34530373--34530503	47	2.8	49	81	11	166	25	16	31	26	1.97
34543336--34543489	40	3.8	40	80	1	157	25	26	21	26	1.99
34555930--34555985	25	2.3	25	81	3	78	26	23	17	32	1.97
34561255--34561292	15	2.5	15	91	4	58	36	7	21	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34563339--34563392	21	2.6	22	82	11	69	24	31	25	18	1.97
34563352--34563393	21	2.0	21	95	0	75	21	33	26	19	1.97
34565989--34566042	18	2.8	19	73	21	58	31	7	1	59	1.36
34567358--34567428	33	2.2	33	84	5	90	36	22	16	23	1.94
34572490--34572546	22	2.6	22	97	0	105	24	24	28	22	2.00
34574883--34575051	84	2.0	84	95	0	302	29	2	20	46	1.65
34578181--34578540	47	7.7	47	72	13	231	22	28	20	28	1.98
34578181--34578533	94	3.8	93	79	10	355	22	28	19	28	1.98
34580775--34580835	30	2.0	30	83	0	77	31	22	8	37	1.84
34584475--34584526	26	2.0	27	84	3	70	30	3	28	36	1.75
34585001--34585309	29	10.8	29	79	8	298	23	16	22	37	1.93
34585217--34585309	28	3.3	28	86	8	143	26	13	23	35	1.93
34585085--34585325	57	4.2	57	81	11	235	23	15	22	39	1.92
34609081--34609145	33	2.0	33	100	0	130	56	3	6	33	1.39
34617128--34617180	28	1.9	27	84	3	70	26	26	18	28	1.98
34617142--34617276	60	2.2	59	83	8	157	25	25	20	27	1.99
34617269--34617324	20	2.8	20	83	2	69	33	23	16	26	1.95
34619443--34619486	19	2.4	18	85	7	54	40	9	0	50	1.34
34622959--34623390	48	9.0	48	90	2	654	35	6	27	30	1.83
34623437--34623543	37	2.9	37	94	0	178	22	18	32	26	1.97
34633932--34634013	24	3.4	24	86	9	114	35	20	19	24	1.96
34633932--34634023	24	3.9	22	80	11	76	36	20	18	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34648150--34648377	50	4.7	48	76	7	167	24	27	18	29	1.98
34648368--34648462	46	2.1	45	81	11	106	25	27	18	28	1.98
34648146--34648558	47	8.7	47	72	15	198	24	28	19	28	1.98
34657061--34657126	33	2.0	33	96	0	123	28	15	16	39	1.89
34660288--34660346	20	3.0	20	97	0	109	37	10	20	32	1.86
34660292--34660346	11	5.4	11	70	16	55	38	10	20	30	1.87
34660397--34660513	23	5.0	24	85	8	152	29	21	22	27	1.99
34660705--34660798	31	3.1	31	96	1	172	39	14	22	23	1.91
34663330--34663537	40	5.2	39	82	3	202	25	25	23	25	2.00
34663330--34663536	80	2.6	80	82	3	238	25	26	23	25	2.00
34671370--34671495	40	3.2	40	86	0	180	24	26	23	24	2.00
34679661--34679719	20	3.0	20	97	0	109	37	10	20	32	1.86
34679665--34679719	11	5.4	11	70	16	55	38	10	20	30	1.87
34679770--34679888	24	5.0	24	88	5	170	28	21	22	26	1.99
34679770--34679888	47	2.5	48	89	5	170	28	21	22	26	1.99
34680080--34680142	30	2.1	31	93	3	110	39	14	22	23	1.91
34681710--34681758	20	2.5	20	86	0	62	32	12	14	40	1.83
34686606--34686652	18	2.6	18	86	0	67	48	14	17	19	1.81
34686999--34687058	27	2.2	27	93	0	102	40	15	18	26	1.90
34686999--34687071	27	2.7	27	89	0	92	36	16	17	28	1.92
34687189--34687228	18	2.2	18	86	8	55	22	45	22	10	1.82
34697443--34697669	40	5.7	40	86	0	175	26	22	26	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34697493--34697690	40	4.9	40	88	2	247	24	23	28	23	2.00
34697443--34697690	80	3.1	80	80	5	261	25	22	27	25	2.00
34716550--34716676	44	2.9	43	77	13	134	25	17	25	31	1.97
34720975--34721034	24	2.4	26	83	8	79	40	3	40	16	1.65
34725743--34725791	24	2.0	24	92	0	80	32	4	36	26	1.75
34730057--34730120	6	10.5	6	74	3	56	6	21	1	70	1.18
34730013--34730076	24	2.7	24	71	7	60	7	31	1	59	1.35
34730055--34730120	18	3.6	19	83	6	73	6	22	1	69	1.19
34730105--34730163	21	2.8	21	80	10	59	10	25	0	64	1.25
34732551--34732774	123	1.8	123	85	1	315	30	10	24	34	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292