Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  117  of  292  ( 35004 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35455709--35456050
27
12.7
27
77
6
185
37
20
8
32
1.84
35456032--35456255
27
8.3
27
88
0
286
36
20
18
24
1.95
35456610--35456660
22
2.3
22
82
0
66
21
27
21
29
1.99
35457048--35457099
6
8.8
6
81
12
63
19
17
17
46
1.85
35457055--35457088
17
2.0
17
94
0
59
17
14
17
50
1.79
35459107--35459224
41
3.1
41
60
28
98
32
17
28
21
1.96
35459075--35459238
71
2.3
71
100
0
328
35
17
28
18
1.94
35466683--35466800
41
3.1
41
60
28
98
32
17
28
21
1.96
35466651--35466814
71
2.3
71
100
0
328
35
17
28
18
1.94
35471364--35471481
41
3.1
41
60
28
98
32
17
28
21
1.96
35471332--35471495
71
2.3
71
100
0
328
35
17
28
18
1.94
35474130--35474161
5
6.6
5
92
7
57
18
0
0
81
0.70
35475305--35475522
40
5.5
40
84
4
230
23
22
27
25
2.00
35475305--35475522
80
2.7
80
85
6
257
23
22
27
25
2.00
35477412--35477698
27
10.6
27
86
0
385
39
21
8
31
1.83
35477406--35477809
27
15.0
27
80
3
294
37
21
8
32
1.84
35477791--35477978
27
7.0
27
91
0
286
33
19
21
25
1.97
35478335--35478393
22
2.7
22
81
5
66
20
27
22
30
1.98
35478758--35478833
6
12.3
6
76
15
75
18
14
15
51
1.77
35486715--35486787
27
2.7
27
91
0
110
38
24
8
28
1.84
35486723--35486819
27
3.6
27
81
5
90
39
18
11
30
1.86
35487200--35487323
31
3.9
32
91
1
180
25
16
22
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35487200--35487323
63
2.0
63
87
3
178
25
16
22
35
1.95
35487235--35487330
32
3.0
32
90
1
113
25
19
21
33
1.97
35487336--35487388
26
2.0
26
85
0
70
22
16
16
43
1.88
35487510--35487562
27
1.9
28
84
3
72
20
18
26
33
1.96
35488938--35489019
34
2.4
35
79
8
105
30
24
20
24
1.99
35489421--35489533
27
4.1
28
75
9
97
38
21
15
25
1.92
35489570--35489641
27
2.6
27
95
2
126
19
20
18
41
1.90
35497840--35497971
39
3.4
39
88
0
183
31
19
25
23
1.98
35506815--35506850
14
2.6
14
95
4
65
11
5
8
75
1.19
35506814--35506852
13
2.7
15
88
11
64
10
7
7
74
1.22
35516623--35516653
16
1.9
16
93
0
53
48
12
25
12
1.77
35517042--35517220
27
6.7
27
86
5
213
41
20
17
20
1.91
35517042--35517236
53
3.7
53
83
4
225
41
19
17
21
1.90
35517042--35517236
80
2.5
80
81
7
236
41
19
17
21
1.90
35519982--35520052
30
2.4
29
81
6
88
57
16
15
9
1.64
35519978--35520048
15
4.7
15
73
0
61
59
16
15
8
1.60
35525099--35525153
24
2.3
24
87
0
83
50
21
1
25
1.58
35526057--35526140
15
5.7
15
80
1
89
55
16
15
11
1.68
35527176--35527215
18
2.4
16
84
12
53
15
0
2
82
0.77
35527862--35528269
3
136.7
3
66
15
100
27
6
3
62
1.36
35528084--35528225
17
7.9
17
68
22
69
28
4
1
64
1.22
35528185--35528234
20
2.5
20
86
0
64
30
2
4
64
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35528199--35528269
23
3.2
23
76
9
60
26
5
5
61
1.40
35544061--35544158
30
3.3
30
75
0
97
29
16
26
27
1.97
35544593--35544631
16
2.4
16
86
0
51
17
28
12
41
1.87
35549273--35549310
19
2.0
20
85
15
53
39
23
0
36
1.55
35549535--35549659
46
2.8
45
92
1
205
30
26
21
21
1.98
35557353--35557433
27
3.2
27
61
25
68
33
6
32
28
1.82
35556880--35557640
48
15.9
48
95
1
1352
35
6
27
30
1.82
35557789--35557891
37
2.8
37
90
0
152
24
18
30
27
1.98
35559169--35559321
40
4.0
40
88
9
246
20
22
31
26
1.98
35562651--35562892
48
5.0
48
96
0
430
35
6
28
30
1.82
35562740--35562820
28
3.2
28
60
26
70
35
6
29
28
1.81
35563033--35563134
37
2.7
37
93
1
168
27
20
27
24
1.99
35566095--35566132
19
2.0
20
85
15
53
39
23
0
36
1.55
35566364--35566534
93
1.8
93
91
0
279
29
28
20
22
1.98
35566359--35566531
46
3.7
46
76
10
190
30
27
20
22
1.98
35566954--35567013
30
2.0
30
83
0
75
35
25
3
36
1.72
35570538--35570596
21
2.9
21
77
7
68
0
40
0
59
0.97
35570816--35570911
51
1.9
50
81
14
117
21
5
3
69
1.22
35572432--35572511
6
13.3
6
85
8
74
15
8
1
75
1.11
35572459--35572511
6
8.8
6
97
0
79
16
9
0
73
1.08
35573956--35574029
22
3.3
21
77
19
69
4
20
1
74
1.06
35576668--35576694
10
2.7
10
100
0
54
40
29
11
18
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35578278--35578308
11
2.7
11
95
5
53
77
6
6
9
1.12
35578276--35578309
12
2.8
13
86
13
54
76
5
8
8
1.15
35583466--35583492
10
2.7
10
100
0
54
40
29
11
18
1.85
35592775--35592872
30
3.3
30
72
4
90
27
26
16
29
1.97
35599525--35599622
30
3.3
30
75
0
97
29
16
26
27
1.97
35601819--35601901
30
2.7
30
81
9
89
13
21
1
63
1.35
35601852--35601907
18
3.1
18
76
5
51
7
19
3
69
1.27
35601877--35601901
12
2.1
12
100
0
50
8
16
0
76
1.02
35601904--35601934
12
2.6
12
94
0
53
29
16
9
45
1.79
35601982--35602038
5
11.0
5
75
20
55
1
17
3
77
1.00
35601982--35602038
16
3.7
14
82
15
60
1
17
3
77
1.00
35601982--35602049
21
3.2
21
76
15
61
1
17
4
76
1.03
35604638--35604735
30
3.3
30
75
0
97
29
16
26
27
1.97
35613577--35613624
20
2.4
20
75
0
60
20
29
18
31
1.97
35616073--35616140
21
3.2
21
65
8
57
58
7
22
11
1.57
35616051--35616147
42
2.3
42
91
1
151
56
5
23
14
1.58
35616144--35616225
24
3.4
24
77
0
92
59
0
28
12
1.33
35616162--35616200
18
2.2
18
90
0
60
56
0
28
15
1.40
35616142--35616262
48
2.5
48
80
5
120
59
0
27
13
1.34
35616218--35616256
18
2.1
19
85
4
53
66
0
23
10
1.22
35617918--35617966
11
4.4
11
78
12
55
77
6
4
12
1.09
35617918--35617961
12
3.8
12
93
3
72
75
6
4
13
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35618872--35618939
21
3.2
21
78
15
70
76
4
16
2
1.07
35618894--35618939
16
3.1
14
82
14
56
76
4
17
2
1.06
35618987--35619017
12
2.6
12
100
0
62
45
12
16
25
1.83
35619020--35619044
12
2.1
12
100
0
50
76
0
16
8
1.02
35619014--35619069
18
3.1
18
76
5
51
69
3
19
7
1.27
35619020--35619101
30
2.7
31
81
5
105
64
1
21
12
1.33
35621313--35621410
30
3.3
30
72
4
81
27
25
16
30
1.96
35630137--35630240
12
8.6
12
72
23
60
72
0
18
8
1.16
35630137--35630240
18
6.4
17
75
21
75
72
0
18
8
1.16
35630146--35630205
25
2.4
24
81
15
77
75
1
18
5
1.07
35630137--35630223
20
4.7
18
72
20
65
72
1
18
8
1.15
35631227--35631388
45
3.6
45
85
3
195
27
25
20
25
1.99
35632051--35632098
14
3.4
14
85
0
60
43
6
31
18
1.75
35634163--35634187
13
1.9
13
100
0
50
36
16
32
16
1.90
35634671--35634767
30
3.2
30
73
2
88
29
13
26
29
1.94
35638842--35638898
10
5.6
10
81
4
60
10
24
21
43
1.83
35646168--35646195
12
2.3
12
100
0
56
21
14
14
50
1.78
35646246--35646302
5
11.0
5
75
20
55
1
17
3
77
1.00
35646246--35646302
16
3.7
14
82
15
60
1
17
3
77
1.00
35646246--35646313
21
3.2
21
76
15
61
1
17
4
76
1.03
35648441--35648479
20
2.0
20
89
0
60
43
12
2
41
1.56
35650410--35650436
10
2.7
10
100
0
54
40
29
11
18
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35652044--35652079
12
2.8
12
91
8
54
75
5
8
11
1.19
35660497--35660536
19
2.1
19
86
9
55
27
35
15
22
1.94
35662487--35662524
20
1.9
20
88
0
58
34
2
10
52
1.50
35664152--35664220
28
2.5
28
95
2
122
43
27
10
18
1.82
35670495--35670532
20
1.9
20
88
0
58
34
2
10
52
1.50
35672160--35672228
28
2.5
28
95
2
122
43
27
10
18
1.82
35675858--35676014
40
4.0
40
89
5
230
26
28
21
23
1.99
35678994--35679187
27
7.2
27
85
0
235
34
18
21
25
1.96
35679683--35679733
27
1.9
26
84
4
66
19
27
17
35
1.94
35679769--35679798
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292