genome.fa.s9.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  210  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62164744--62164846	9	11.1	9	79	6	107	47	20	0	32	1.50
62164761--62164838	39	2.0	39	97	0	147	46	21	0	32	1.52
62164757--62164869	57	2.0	57	89	0	172	46	21	0	31	1.58
62164814--62164856	18	2.4	18	88	0	59	46	18	2	32	1.62
62164758--62164856	27	3.6	27	78	8	81	45	21	1	32	1.59
62168308--62168372	34	2.0	34	84	6	89	30	26	16	26	1.97
62167574--62169347	887	2.0	889	92	2	2983	33	22	18	25	1.96
62171101--62171208	25	4.2	26	92	4	184	36	25	5	33	1.79
62171101--62171208	51	2.1	51	93	3	182	36	25	5	33	1.79
62171703--62171755	26	2.0	27	82	13	67	28	16	18	35	1.93
62173233--62173339	26	4.2	26	92	2	189	36	25	6	31	1.81
62173233--62173339	51	2.1	52	94	1	189	36	25	6	31	1.81
62177007--62177036	15	1.9	16	93	6	53	40	40	13	6	1.71
62177021--62177120	44	2.3	44	82	1	121	29	28	16	27	1.97
62181141--62181176	16	2.2	17	90	5	56	33	0	13	52	1.41
62182200--62182230	2	15.5	2	100	0	62	51	0	0	48	1.00
62182243--62182303	24	2.5	23	82	12	70	54	3	13	29	1.55
62182438--62182551	21	5.2	22	79	11	101	59	2	3	34	1.28
62182438--62182551	44	2.6	43	82	10	133	59	2	3	34	1.28
62182490--62182553	11	5.7	11	76	9	58	62	1	1	34	1.14
62182514--62182570	19	3.2	16	76	18	51	59	1	1	36	1.18
62182793--62182944	3	50.7	3	65	18	50	59	2	7	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62182874--62182942	35	1.9	36	82	2	86	60	2	8	27	1.40
62184656--62184690	14	2.5	14	90	0	52	57	5	17	20	1.60
62184653--62184861	85	2.5	84	83	6	269	41	16	16	25	1.89
62184828--62184861	13	2.5	14	85	9	52	64	2	11	20	1.39
62184940--62185163	72	3.0	73	82	5	263	33	21	16	27	1.95
62185145--62185176	14	2.3	14	94	0	55	68	3	9	18	1.30
62197558--62197610	28	1.9	27	84	3	70	26	26	18	28	1.98
62197572--62197706	60	2.2	59	83	8	157	25	25	20	27	1.99
62197699--62197744	20	2.3	20	82	14	60	28	28	17	26	1.98
62199438--62199465	14	2.0	14	100	0	56	42	14	7	35	1.73
62201379--62201407	2	14.5	2	100	0	58	51	0	0	48	1.00
62201624--62201726	21	4.8	22	80	10	106	58	2	3	34	1.31
62201620--62201741	46	2.7	44	83	10	140	59	2	3	35	1.27
62201665--62201743	12	6.8	12	75	22	71	60	2	1	35	1.18
62201681--62201758	12	6.2	13	78	16	60	60	2	1	35	1.19
62202062--62202130	35	1.9	36	82	2	86	60	2	8	27	1.40
62204244--62204482	127	1.9	127	88	1	363	35	17	18	28	1.94
62204912--62204958	20	2.3	20	85	10	60	61	8	4	25	1.43
62205257--62205312	18	3.3	17	83	11	62	66	5	3	25	1.29
62205332--62205375	17	2.5	18	85	3	63	65	0	9	25	1.21
62205361--62205420	18	3.2	18	76	11	50	63	5	5	26	1.36
62206099--62206138	15	2.6	15	84	4	53	82	0	10	7	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62207549--62207658	41	2.8	38	76	13	105	28	20	25	26	1.99
62207801--62207857	22	2.6	21	76	15	62	28	1	5	64	1.25
62208064--62208110	15	3.2	15	88	8	62	17	0	40	42	1.49
62208068--62208123	22	2.6	21	86	5	76	19	0	39	41	1.52
62208926--62209300	157	2.4	155	78	8	384	34	13	22	29	1.92
62209555--62209616	25	2.4	25	86	2	88	3	43	14	38	1.62
62211734--62211928	99	2.0	97	82	9	234	43	7	6	43	1.57
62211896--62212038	43	3.2	42	64	23	103	35	4	5	53	1.46
62212030--62212054	5	5.0	5	100	0	50	20	0	0	80	0.72
62211939--62212242	94	3.2	95	88	7	461	34	5	4	54	1.45
62211883--62212242	195	1.9	187	89	6	557	34	6	5	54	1.47
62212124--62212153	10	3.0	10	95	0	51	26	0	0	73	0.84
62212125--62212155	15	2.1	15	93	0	53	29	0	0	70	0.87
62212657--62212739	26	3.2	26	91	1	132	31	4	26	37	1.77
62214359--62214473	27	4.3	26	82	7	131	17	22	22	37	1.94
62215498--62215603	9	11.6	9	75	13	83	44	15	1	38	1.57
62215504--62215603	18	5.4	18	73	13	96	45	15	2	38	1.57
62221083--62221111	15	2.0	15	93	6	51	34	6	51	6	1.55
62221092--62221131	21	1.9	21	84	0	53	30	17	50	2	1.59
62221498--62221598	43	2.4	42	85	5	130	24	20	22	31	1.98
62222121--62222163	18	2.3	19	88	4	61	34	4	2	58	1.32
62222797--62222850	22	2.4	22	84	3	63	7	14	20	57	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62223356--62223398	12	3.3	12	84	12	50	60	0	0	39	0.97
62223356--62223397	13	3.2	13	86	10	50	61	0	0	38	0.96
62223388--62223472	20	4.2	20	81	11	84	55	0	1	43	1.07
62223407--62223488	33	2.5	32	75	14	87	57	0	0	42	0.98
62223460--62223492	10	3.4	10	91	8	59	60	0	0	39	0.97
62223388--62223492	41	2.6	41	79	14	110	56	0	0	42	1.06
62223420--62223492	19	4.2	19	72	24	70	58	0	0	41	0.98
62223449--62223494	24	1.9	24	82	8	58	60	0	0	39	0.97
62223440--62223501	31	2.0	31	84	12	83	61	0	0	38	0.96
62223485--62223599	33	3.5	33	82	8	135	74	4	9	11	1.19
62224214--62224408	92	2.1	92	97	0	363	24	18	8	48	1.76
62225233--62225295	29	2.2	28	82	2	72	22	15	25	36	1.94
62228290--62228327	20	1.9	20	89	10	60	28	10	0	60	1.30
62228435--62228479	23	2.1	20	88	12	63	8	31	0	60	1.28
62232618--62232819	72	2.8	71	82	5	244	22	26	30	20	1.98
62234452--62234931	159	3.0	157	84	3	584	24	25	12	36	1.91
62236046--62236080	4	8.8	4	93	0	61	54	25	0	20	1.45
62240589--62240640	20	2.9	18	78	16	54	53	0	1	44	1.11
62240587--62240666	31	2.6	31	82	3	83	53	0	3	42	1.18
62240606--62240666	31	2.0	31	86	0	86	54	0	3	42	1.17
62242521--62242614	24	3.8	25	80	8	95	17	27	23	31	1.96
62242518--62242660	25	5.8	24	77	10	110	18	25	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62242518--62242655	49	2.8	49	81	10	156	18	26	23	32	1.97
62244065--62244150	28	3.1	28	76	6	102	25	13	33	26	1.94
62244065--62244179	56	2.1	56	91	0	185	26	16	31	25	1.96
62244080--62244179	28	3.6	28	78	10	123	28	18	29	25	1.98
62244257--62244355	32	3.1	32	81	5	94	39	9	21	30	1.84
62247710--62247779	23	3.0	23	82	0	86	42	18	18	20	1.89
62259921--62259953	7	4.9	7	96	3	59	30	27	27	15	1.96
62260157--62260317	78	2.1	79	82	5	193	33	8	6	51	1.58
62260739--62260790	14	3.7	14	73	0	59	34	5	0	59	1.21
62261371--62261396	12	2.2	12	100	0	52	23	0	7	69	1.14
62269033--62269065	16	2.1	16	100	0	66	18	18	36	27	1.94
62270015--62270041	5	5.4	5	100	0	54	59	0	0	40	0.98
62271080--62271142	23	2.7	24	78	7	85	12	6	34	46	1.68
62271726--62271763	20	1.9	20	89	10	60	42	0	2	55	1.14
62271953--62271994	3	14.0	3	100	0	84	33	0	0	66	0.92
62272345--62272432	42	2.1	42	95	0	158	35	5	19	39	1.75
62272771--62272806	3	12.0	3	93	0	63	69	0	0	30	0.89
62272979--62273029	20	2.6	21	81	12	63	56	1	1	39	1.22
62272993--62273032	20	2.0	20	90	9	64	55	0	0	45	0.99
62272993--62273039	20	2.7	17	84	15	53	53	0	0	46	1.00
62281100--62281138	20	2.0	20	90	10	62	41	0	2	56	1.13
62281325--62281365	3	13.7	3	100	0	82	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62281516--62281549	15	2.4	14	90	9	52	82	8	8	0	0.85
62281710--62281787	40	2.0	40	92	0	129	34	1	19	44	1.59
62282842--62282870	11	2.5	12	94	5	51	27	0	0	72	0.85
62285942--62285969	2	14.0	2	100	0	56	50	0	0	50	1.00
62300821--62301079	46	5.6	46	86	0	340	41	13	24	20	1.88
62304944--62305057	40	3.1	37	71	16	117	31	21	18	28	1.97
62304944--62305120	75	2.4	75	89	3	259	32	20	18	28	1.97
62309243--62309338	32	3.0	32	96	0	174	38	19	17	23	1.93
62310186--62310227	13	2.9	14	80	13	50	54	0	0	45	0.99
62310190--62310226	16	2.3	16	86	13	58	59	0	0	40	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292