genome.fa.s9.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  147  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43716604--43716661	22	2.6	22	83	0	71	18	24	20	36	1.95
43716747--43716807	32	1.9	32	83	6	79	24	19	21	34	1.96
43716835--43716927	27	3.5	26	83	5	87	23	21	18	36	1.95
43735913--43736423	27	19.1	27	85	2	647	36	18	19	25	1.95
43736787--43736832	22	2.1	22	83	0	56	21	23	17	36	1.94
43736918--43736978	32	1.9	32	83	6	79	24	19	21	34	1.96
43737006--43737098	27	3.5	26	83	5	87	23	21	18	36	1.95
43745746--43745771	12	2.2	12	100	0	52	69	15	7	7	1.35
43746482--43746516	18	1.9	18	88	11	54	37	0	14	48	1.44
43753029--43753067	18	2.2	18	85	0	51	15	33	35	15	1.89
43754264--43754327	25	2.6	25	82	2	76	39	15	15	29	1.89
43756724--43756761	19	2.0	20	85	15	53	39	23	0	36	1.55
43756986--43757158	46	3.7	46	74	10	154	30	27	19	22	1.98
43757581--43757637	30	1.9	30	85	0	78	33	22	5	38	1.77
43761129--43761168	18	2.2	18	100	0	80	22	15	25	37	1.93
43773871--43774078	40	5.2	39	84	1	218	25	25	22	25	2.00
43773871--43774076	80	2.6	81	84	3	247	25	26	22	25	2.00
43781882--43782089	40	5.2	39	85	1	227	25	25	22	26	2.00
43781882--43782089	80	2.6	80	84	1	256	25	25	22	26	2.00
43784045--43784228	39	4.7	39	86	3	239	19	20	29	30	1.97
43792058--43792242	39	4.7	39	89	0	280	18	20	30	30	1.96
43797524--43797557	13	2.6	13	100	0	68	35	8	0	55	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43798127--43798168	11	3.6	11	81	12	57	59	4	0	35	1.19
43801711--43801911	109	1.8	110	88	3	307	26	19	17	36	1.94
43804841--43805016	46	3.8	46	81	10	223	19	21	30	28	1.98
43804837--43805008	93	1.8	93	94	0	308	19	22	30	27	1.98
43806270--43806318	24	2.0	24	100	0	98	16	38	16	28	1.90
43807994--43808072	15	5.4	15	77	10	83	10	17	13	58	1.63
43807985--43808071	29	3.0	29	81	8	95	10	17	16	56	1.67
43810445--43810616	46	3.8	46	78	15	205	20	21	29	28	1.98
43819392--43819429	20	1.9	20	84	10	51	23	10	21	44	1.83
43819433--43819479	22	2.1	22	88	0	67	44	14	14	25	1.84
43819598--43819690	37	2.5	37	73	1	87	30	12	17	39	1.87
43819598--43819694	19	5.2	19	75	2	88	31	12	16	39	1.86
43823570--43823594	11	2.3	11	100	0	50	40	0	0	60	0.97
43825441--43825607	40	4.2	40	81	2	176	24	27	22	25	2.00
43825457--43825607	80	1.9	79	83	6	198	23	27	22	25	2.00
43826433--43826478	17	2.5	19	74	22	53	34	23	17	23	1.96
43834378--43834478	28	3.5	28	86	6	114	29	26	13	29	1.94
43842330--43842430	28	3.5	28	86	6	114	29	26	13	29	1.94
43845327--43845534	40	5.2	39	84	5	247	24	20	27	26	1.99
43845323--43845534	80	2.7	79	87	3	284	25	20	27	26	1.99
43846759--43846806	25	1.9	25	86	0	69	33	25	16	25	1.96
43846843--43846933	20	4.6	20	94	0	155	34	10	21	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43846845--43846921	9	7.9	9	70	16	55	33	9	22	35	1.85
43846979--43847096	23	5.0	24	89	9	172	28	21	22	27	1.99
43848177--43848602	228	1.9	228	98	0	825	35	24	4	34	1.77
43852103--43852217	55	2.1	55	96	0	212	46	12	5	36	1.64
43852108--43852196	27	3.3	27	65	14	74	48	10	4	37	1.57
43858610--43858674	29	2.3	29	81	2	69	43	1	23	32	1.63
43861110--43861763	49	13.3	49	93	2	1073	30	29	8	31	1.86
43867571--43867607	14	2.5	16	87	12	53	16	2	13	67	1.34
43879999--43880048	23	2.2	23	92	0	82	16	16	24	44	1.86
43885062--43885167	27	3.9	26	80	7	113	16	24	21	36	1.94
43889564--43889750	71	2.7	68	91	5	263	18	29	18	33	1.95
43889587--43889750	71	2.3	71	97	0	310	18	28	18	34	1.95
43889587--43889784	71	2.8	70	90	3	249	20	28	17	32	1.96
43893618--43893662	14	3.3	14	84	6	65	48	13	0	37	1.42
43897843--43898009	40	4.2	40	79	6	169	26	22	26	24	2.00
43905766--43905932	40	4.2	40	79	6	169	26	22	26	24	2.00
43907304--43907368	31	2.1	31	97	0	121	23	21	15	40	1.91
43907559--43907677	24	5.0	24	83	9	145	26	25	21	26	2.00
43907584--43907675	47	2.0	47	93	4	159	27	26	22	23	2.00
43907728--43907787	20	3.0	20	95	0	111	33	20	10	36	1.86
43907728--43907782	11	5.4	11	70	16	55	30	20	10	38	1.87
43907830--43907877	25	1.9	25	86	0	69	25	16	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43913647--43913864	120	1.8	121	85	3	314	31	9	24	34	1.88
43913861--43913990	40	3.2	40	82	4	165	23	24	28	23	2.00
43913824--43913990	80	2.1	79	81	7	196	25	23	27	23	2.00
43921671--43921889	121	1.8	121	84	2	305	30	10	24	34	1.89
43921848--43922013	40	4.2	40	76	6	160	24	22	27	24	2.00
43925186--43925230	19	2.4	19	81	3	56	35	13	15	35	1.87
43925243--43925279	19	1.9	19	88	0	56	48	18	8	24	1.75
43925390--43925441	22	2.4	22	86	0	68	28	15	11	44	1.81
43933027--43933072	22	2.1	22	84	8	58	60	2	2	34	1.21
43935345--43935386	11	3.6	11	81	12	57	35	0	4	59	1.19
43937831--43937868	19	2.0	19	100	0	76	57	0	10	31	1.32
43941276--43941456	39	4.6	39	83	4	222	30	28	19	20	1.98
43941264--43941448	78	2.4	78	87	1	255	30	30	18	20	1.96
43945160--43945335	46	3.8	46	80	12	225	21	21	28	28	1.98
43945156--43945327	93	1.8	93	96	0	317	20	21	29	27	1.98
43948281--43948349	15	4.6	15	83	0	84	11	17	13	57	1.64
43948272--43948359	30	3.0	30	81	8	99	10	17	15	56	1.66
43950653--43950832	46	3.8	47	80	13	208	21	21	28	27	1.99
43956632--43956731	28	3.5	28	86	6	112	30	26	14	30	1.94
43956757--43956850	29	3.2	29	95	0	161	26	27	14	30	1.95
43956721--43956847	58	2.2	58	81	2	139	25	30	14	29	1.95
43960729--43960870	39	3.6	39	87	0	212	29	29	19	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43960927--43960952	2	13.0	2	100	0	52	50	0	0	50	1.00
43969458--43969521	31	2.1	31	91	2	103	23	23	15	37	1.93
43969713--43969855	24	6.0	24	91	4	209	26	22	22	28	1.99
43969713--43969854	47	3.0	48	90	5	207	26	22	22	28	1.99
43969712--43969855	71	2.0	72	89	4	220	26	22	22	29	1.99
43969906--43969944	20	2.0	20	94	0	69	28	23	12	35	1.91
43969988--43970035	25	1.9	25	86	0	69	25	16	25	33	1.96
43977463--43977526	31	2.1	31	91	2	103	23	23	15	37	1.93
43977736--43977812	22	3.6	22	83	10	97	29	19	23	27	1.98
43977714--43977820	44	2.4	45	83	13	134	28	22	22	26	1.99
43984209--43984375	40	4.2	40	81	2	176	24	27	22	25	2.00
43984225--43984375	80	1.9	79	83	6	198	23	27	22	25	2.00
43985200--43985245	17	2.5	19	74	22	53	34	23	17	23	1.96
43989034--43989072	14	2.8	14	88	7	53	58	20	0	20	1.39
43991228--43991273	23	2.0	23	95	0	83	45	26	15	13	1.82
43996892--43996916	13	1.9	13	100	0	50	68	16	0	16	1.22
43998702--43998726	13	1.9	13	100	0	50	24	24	24	28	2.00
44002810--44002838	2	14.5	2	100	0	58	51	0	0	48	1.00
44008529--44008600	36	2.0	38	83	8	96	27	9	19	43	1.82
44011271--44011296	12	2.2	12	100	0	52	69	15	7	7	1.35
44016783--44016846	31	2.1	31	90	0	101	25	23	15	35	1.94
44017038--44017226	23	8.0	23	88	4	254	27	22	22	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44017039--44017226	70	2.7	70	90	4	281	27	22	22	27	1.99
44017039--44017226	94	2.0	95	90	3	299	27	22	22	27	1.99
44017284--44017360	9	7.9	9	75	16	73	36	20	7	35	1.82
44017291--44017362	11	7.1	11	73	17	75	34	19	9	36	1.85
44017280--44017362	20	4.2	20	93	0	148	33	19	10	36	1.86
44018622--44018707	27	3.2	27	77	0	91	29	6	25	38	1.82
44018686--44019133	27	16.7	27	86	3	582	40	9	22	27	1.84
44022660--44022705	18	2.6	18	96	0	83	17	30	32	19	1.95
44023975--44024023	25	2.0	25	87	0	71	38	18	14	28	1.90
44023984--44024038	25	2.2	25	90	3	85	41	16	14	27	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292