genome.fa.s9.2.7.7.80.10.50.1000.258.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  258  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74457233--74457369	48	2.6	50	76	12	125	54	2	5	37	1.38
74457345--74457392	5	9.6	5	80	15	55	58	0	2	39	1.10
74457237--74457392	25	6.4	25	67	18	64	54	2	5	37	1.36
74457853--74457968	30	3.9	30	95	0	205	18	6	49	26	1.70
74457873--74457928	18	3.4	18	68	27	61	19	7	48	25	1.74
74458675--74458842	89	1.9	89	86	5	239	31	19	19	29	1.96
74458653--74459732	146	6.7	162	74	17	582	34	19	17	29	1.94
74458933--74459322	73	5.3	74	84	7	508	34	19	16	29	1.94
74458939--74459322	146	2.6	146	94	0	651	34	20	16	29	1.94
74459247--74459406	86	1.8	87	86	2	232	36	19	15	28	1.92
74459457--74459787	76	4.5	73	85	7	445	31	20	16	31	1.94
74459417--74459786	145	2.5	147	84	5	460	32	20	17	29	1.96
74459973--74460020	14	3.5	14	80	5	62	66	4	10	18	1.37
74459976--74460020	13	3.4	13	81	6	63	68	4	11	15	1.34
74459797--74460092	100	3.0	101	84	2	382	40	18	17	24	1.91
74460000--74460140	73	1.9	73	88	0	210	31	24	18	26	1.98
74461082--74461213	39	3.3	40	73	8	117	52	4	6	37	1.47
74461770--74461801	13	2.4	14	94	5	57	0	6	3	90	0.53
74462925--74462964	18	2.2	18	95	0	71	0	12	0	87	0.54
74469050--74469084	16	2.3	15	90	5	52	62	2	2	31	1.24
74469198--74469241	21	2.0	22	83	12	56	56	2	6	34	1.38
74469237--74469305	25	2.9	24	81	8	79	57	5	5	30	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74469330--74469444	25	4.6	25	71	8	83	53	3	6	36	1.43
74469408--74469459	18	3.2	16	81	10	52	59	0	3	36	1.16
74469938--74470083	30	4.9	30	96	0	256	18	6	48	26	1.71
74469958--74470013	18	3.4	18	68	27	61	19	7	48	25	1.74
74470462--74470645	18	10.2	18	75	13	101	34	10	15	39	1.83
74470443--74470640	36	5.5	35	74	5	146	34	10	15	39	1.81
74470443--74470646	54	3.8	54	76	7	157	34	10	15	39	1.82
74472221--74472452	3	76.3	3	64	16	59	56	4	7	31	1.49
74472593--74472709	3	38.7	3	87	1	171	66	1	2	29	1.14
74472759--74472802	13	3.5	12	78	9	52	70	0	4	25	1.06
74473448--74473528	22	4.0	22	67	23	79	72	3	9	13	1.23
74473447--74473518	36	2.0	36	100	0	144	72	2	11	13	1.23
74473470--74473496	14	1.9	14	100	0	54	74	0	14	11	1.08
74481184--74481245	27	2.3	27	80	0	70	53	4	1	40	1.32
74481201--74481249	19	2.7	18	78	6	62	51	2	0	46	1.12
74484352--74484450	30	3.3	30	89	0	162	17	5	49	28	1.67
74485153--74485697	87	6.0	91	79	8	478	38	18	16	27	1.91
74485501--74485533	14	2.4	14	94	0	57	63	6	12	18	1.48
74485276--74485697	183	2.3	180	82	8	498	38	18	16	27	1.91
74485276--74485697	91	4.7	86	83	8	409	38	18	16	27	1.91
74485610--74486044	147	3.0	146	95	0	789	32	20	16	30	1.95
74486234--74486278	13	3.4	13	87	6	72	68	6	11	13	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74486062--74486350	100	2.9	101	87	4	399	40	19	16	23	1.91
74486261--74486425	73	2.3	74	88	2	244	35	21	16	26	1.95
74486161--74486617	177	2.6	173	87	5	634	38	19	16	25	1.93
74486434--74486604	75	2.3	76	82	4	222	34	20	17	27	1.95
74486583--74486617	14	2.5	14	95	0	61	57	2	20	20	1.54
74486509--74487172	87	7.9	83	71	15	361	34	19	16	29	1.94
74486423--74487165	248	3.0	242	76	16	702	34	20	16	28	1.94
74486766--74487098	73	4.3	74	71	17	268	35	18	15	30	1.92
74486696--74487172	160	3.0	158	79	7	480	33	19	15	31	1.93
74487078--74487112	14	2.6	14	90	4	54	51	5	14	28	1.65
74490625--74490658	6	5.5	6	89	6	50	82	0	2	14	0.79
74490625--74490658	13	2.8	12	90	4	50	82	0	2	14	0.79
74491525--74491578	18	3.3	18	66	28	57	22	7	48	22	1.75
74491520--74491618	30	3.3	30	91	0	162	17	5	49	28	1.67
74505981--74506009	3	9.7	3	100	0	58	31	0	0	68	0.89
74507313--74507354	17	2.3	18	80	8	50	52	0	0	47	1.00
74509144--74509185	18	2.3	18	84	8	50	7	23	2	66	1.28
74519233--74519287	16	3.4	16	87	0	83	34	5	29	30	1.80
74519433--74519483	25	2.0	25	82	17	61	39	0	7	52	1.30
74519523--74519581	20	2.8	21	79	10	75	52	1	0	45	1.10
74519485--74519605	57	2.2	54	78	11	127	53	2	0	43	1.14
74519557--74519602	24	1.9	24	86	8	67	47	2	0	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74521946--74521974	14	2.1	14	100	0	58	51	20	6	20	1.70
74521960--74522035	40	1.9	40	100	0	152	38	14	13	34	1.85
74525013--74525044	15	2.1	15	94	0	55	34	12	21	31	1.91
74525606--74525633	13	2.2	13	100	0	56	35	7	7	50	1.57
74531904--74531931	2	14.0	2	100	0	56	50	0	0	50	1.00
74536436--74536527	44	2.0	45	86	12	127	39	6	3	51	1.44
74539554--74539582	15	1.9	15	100	0	58	24	13	20	41	1.89
74539624--74539657	4	8.8	4	93	6	61	26	73	0	0	0.83
74540055--74540095	4	10.2	4	85	15	50	46	29	0	24	1.53
74541863--74541941	33	2.4	33	86	0	122	24	17	29	29	1.97
74544962--74545025	29	2.2	30	86	8	96	45	1	0	53	1.10
74550363--74550429	34	2.0	34	91	5	109	38	0	5	55	1.25
74555261--74555292	12	2.6	12	95	5	55	90	0	9	0	0.45
74556410--74556536	66	1.9	66	95	0	227	32	19	12	35	1.90
74556818--74557411	86	6.8	88	74	10	287	35	22	22	20	1.96
74556587--74557411	217	3.8	218	93	1	1363	35	21	22	20	1.96
74556601--74557325	86	8.3	85	71	11	246	35	21	22	20	1.96
74556589--74557499	132	7.0	132	75	10	579	35	21	22	21	1.96
74556601--74557500	44	20.6	44	69	11	372	35	21	22	21	1.96
74557518--74557715	68	2.9	67	89	3	292	28	24	19	27	1.99
74557828--74558242	44	9.4	43	71	8	275	30	19	23	26	1.98
74557831--74558242	88	4.7	87	73	8	332	30	19	23	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74557769--74558242	132	3.6	132	98	0	894	30	19	23	26	1.98
74558417--74559056	88	7.3	87	73	11	359	35	21	21	21	1.96
74558463--74558880	44	9.6	44	68	12	209	35	21	22	20	1.96
74558405--74559056	175	3.8	172	75	11	510	35	21	21	21	1.96
74558506--74558969	131	3.6	132	91	2	733	35	22	20	21	1.96
74558417--74559002	43	13.4	43	70	12	345	35	21	21	21	1.96
74559074--74559272	68	2.9	67	86	5	267	28	23	21	27	1.99
74559325--74560036	132	5.4	132	96	0	1280	32	19	23	25	1.98
74559387--74559990	44	13.7	44	76	7	519	31	19	23	25	1.98
74560499--74560545	23	2.2	23	81	11	55	14	2	27	55	1.51
74560529--74560566	19	2.0	19	85	10	51	7	0	26	65	1.19
74560769--74560854	3	28.3	3	73	19	65	30	3	1	65	1.17
74560768--74560854	27	3.4	27	71	19	78	29	3	1	65	1.16
74560769--74560858	18	4.7	18	80	13	92	31	3	1	64	1.17
74563099--74563184	3	28.3	3	72	17	63	63	1	4	30	1.21
74563099--74563181	12	6.8	12	76	11	71	63	1	4	30	1.22
74563099--74563185	27	3.4	27	70	13	76	64	1	4	29	1.21
74563479--74563526	25	1.9	25	87	8	71	52	25	4	18	1.63
74563512--74563578	19	3.3	19	84	14	73	59	29	1	8	1.37
74563705--74563731	4	6.8	4	100	0	54	22	0	0	77	0.76
74564071--74564439	44	8.4	44	72	13	199	26	23	19	30	1.98
74564015--74564358	88	3.9	88	77	7	383	25	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74564014--74564454	132	3.3	132	84	2	548	26	22	19	31	1.97
74564034--74564402	176	2.1	176	92	1	605	26	22	19	31	1.98
74564027--74564395	88	4.2	87	76	8	352	26	22	19	31	1.97
74564146--74564439	88	3.3	87	72	12	278	26	23	18	31	1.98
74564514--74564701	68	2.8	69	86	8	260	25	21	21	30	1.98
74564817--74565112	132	2.2	132	92	0	484	19	21	23	35	1.96
74564784--74565063	88	3.2	88	74	8	266	21	19	23	35	1.96
74564730--74565281	175	3.2	174	81	7	525	20	22	21	35	1.96
74564730--74565325	43	13.7	43	74	6	362	20	22	21	35	1.96
74565389--74565515	66	1.9	66	96	0	236	35	11	19	33	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292