genome.fa.s9.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  112  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34078104--34078177	29	2.6	29	95	0	139	27	31	14	27	1.95
34078045--34078177	58	2.3	58	80	2	133	24	33	17	24	1.96
34085977--34086050	29	2.6	29	95	0	139	27	31	14	27	1.95
34085918--34086050	58	2.3	58	80	2	133	24	33	17	24	1.96
34090450--34090525	32	2.4	31	86	2	98	39	3	3	52	1.38
34094864--34095088	40	5.7	40	89	4	289	26	20	26	26	1.99
34094864--34095121	80	3.2	79	85	7	274	27	20	25	26	1.99
34097981--34098064	43	2.0	43	95	0	150	19	17	32	30	1.95
34098369--34098478	41	2.7	41	88	2	150	40	20	21	18	1.92
34098394--34098530	41	3.4	40	86	5	177	37	22	21	18	1.94
34098805--34098831	2	13.5	2	100	0	54	51	0	0	48	1.00
34098830--34098873	21	2.1	21	82	0	52	15	0	40	43	1.47
34098830--34098908	35	2.3	35	80	8	90	17	0	37	44	1.49
34098850--34098916	35	1.9	35	81	6	82	19	0	37	43	1.51
34099345--34099513	80	2.1	80	87	2	250	36	14	20	27	1.92
34099345--34099612	81	3.3	80	78	10	269	38	14	21	25	1.91
34104448--34104934	241	2.0	241	96	0	902	34	17	14	33	1.91
34105114--34105280	9	17.6	9	74	10	136	46	20	0	31	1.56
34105131--34105247	39	3.0	39	94	0	207	46	21	0	32	1.52
34105170--34105278	57	1.9	57	88	0	164	44	23	0	30	1.60
34105114--34105265	39	4.1	37	87	6	184	46	21	0	31	1.56
34105125--34105280	48	3.3	47	78	3	168	45	21	0	32	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34107151--34107213	24	2.6	24	100	0	126	20	17	26	34	1.95
34115359--34115403	21	2.2	20	92	4	72	26	17	55	0	1.42
34115697--34115805	43	2.5	43	87	0	164	22	19	28	30	1.98
34115736--34115876	71	2.0	71	91	0	228	19	17	29	33	1.95
34115807--34115997	43	4.4	43	94	0	337	17	19	28	34	1.94
34115697--34115919	114	2.0	114	89	1	340	20	18	28	31	1.97
34119049--34119266	40	5.5	40	92	2	316	24	28	24	22	1.99
34127175--34127391	40	5.5	40	91	3	307	24	28	24	22	1.99
34136040--34136097	29	2.0	29	100	0	116	34	24	13	27	1.93
34140248--34140318	21	3.3	21	67	11	63	21	25	36	16	1.94
34141743--34141908	46	3.6	46	75	13	169	31	27	18	22	1.97
34141751--34141922	93	1.8	93	89	0	272	29	27	20	22	1.98
34146224--34146401	40	4.5	40	92	2	270	23	23	28	24	2.00
34154275--34154452	40	4.5	40	92	2	279	23	23	27	25	2.00
34161973--34162070	50	2.0	50	81	0	115	41	14	13	30	1.84
34164674--34164734	32	1.9	32	83	6	79	42	8	8	40	1.64
34167702--34167738	18	2.0	19	89	5	58	37	0	8	54	1.30
34168087--34168131	21	2.1	22	87	4	65	22	6	11	60	1.54
34171747--34171792	23	2.0	23	86	4	65	28	45	4	21	1.71
34172386--34172503	28	4.2	28	76	7	114	23	33	13	29	1.93
34172720--34172750	16	1.9	16	93	0	53	12	9	19	58	1.62
34176296--34176436	27	5.2	27	82	11	182	34	23	24	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34176296--34176439	54	2.7	54	94	2	245	34	23	24	17	1.96
34178057--34178164	26	4.2	26	93	0	189	36	24	7	32	1.83
34183432--34183544	27	4.2	27	83	8	133	34	21	23	21	1.97
34183414--34183544	27	4.9	26	80	9	131	34	19	23	22	1.97
34183440--34183544	53	2.0	52	90	1	165	34	20	23	21	1.97
34185163--34185270	26	4.2	26	93	0	189	36	24	7	32	1.83
34187419--34187624	40	5.2	40	91	1	308	28	27	21	22	1.99
34189709--34189753	19	2.4	18	85	3	54	40	15	4	40	1.67
34191003--34191095	28	3.3	28	76	11	84	26	33	11	27	1.92
34191275--34191306	16	2.0	16	93	0	55	9	25	21	43	1.82
34195892--34196099	40	5.2	40	79	4	195	25	25	23	25	2.00
34195892--34196098	80	2.6	80	80	3	220	25	25	23	25	2.00
34211753--34211974	124	1.8	122	83	3	293	31	11	23	32	1.90
34211932--34212059	40	3.2	40	81	4	134	26	23	27	22	2.00
34216268--34216435	40	4.2	40	81	4	162	23	26	23	26	2.00
34224277--34224444	40	4.2	40	82	1	185	24	26	22	26	2.00
34250914--34251039	40	3.2	39	80	6	139	21	25	24	28	1.99
34250853--34251039	80	2.3	80	78	12	204	22	27	24	25	2.00
34256838--34256871	13	2.6	13	95	0	59	5	38	32	23	1.79
34261405--34261557	39	3.9	39	92	0	252	23	20	32	23	1.98
34261406--34261587	39	4.6	39	89	0	247	23	21	31	23	1.98
34269478--34269619	39	3.6	39	86	1	185	23	21	31	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34277482--34277624	39	3.6	39	88	0	187	23	22	31	23	1.98
34285181--34285221	20	2.0	20	95	0	73	31	19	12	36	1.89
34285496--34285582	42	2.1	41	85	4	113	34	24	14	26	1.94
34285496--34285602	40	2.6	41	80	5	110	34	24	14	26	1.94
34291949--34292042	28	3.3	28	83	2	125	25	14	29	29	1.95
34293418--34293453	12	2.9	12	95	4	63	25	25	25	25	2.00
34294301--34294413	42	2.8	40	85	5	145	35	26	15	22	1.94
34294321--34294405	42	2.0	42	95	0	152	37	24	14	23	1.92
34294307--34294439	40	3.3	40	84	4	140	35	25	15	24	1.94
34294991--34295018	11	2.5	11	100	0	56	60	7	21	10	1.53
34296531--34296633	37	2.8	37	90	0	170	26	32	18	23	1.97
34296774--34296967	48	4.0	48	95	0	343	30	28	6	34	1.82
34299973--34300157	40	4.6	40	78	2	201	28	23	23	24	2.00
34305831--34305878	25	1.9	25	91	0	78	31	14	18	35	1.91
34305841--34305980	50	2.8	48	80	11	129	29	15	20	35	1.92
34305907--34305980	25	3.0	23	73	13	67	27	16	20	36	1.93
34308130--34308253	43	2.9	41	71	12	106	33	24	15	27	1.95
34315098--34315155	20	2.9	19	80	14	64	6	25	25	41	1.80
34316510--34316668	43	3.7	44	74	13	116	30	28	20	21	1.98
34321098--34321139	2	21.0	2	90	0	66	50	2	2	45	1.27
34321726--34321799	29	2.6	29	89	4	105	25	16	32	25	1.96
34328531--34328641	43	2.6	42	82	5	125	31	27	16	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34330505--34330555	25	2.0	25	100	0	102	15	47	3	33	1.64
34336369--34336519	40	3.8	40	77	13	134	27	23	26	22	2.00
34336406--34336535	40	3.2	40	77	4	138	24	23	27	23	2.00
34344376--34344503	40	3.2	40	78	8	120	28	21	25	24	1.99
34347441--34347568	40	3.2	40	78	8	120	28	21	25	24	1.99
34349244--34349359	43	2.7	43	82	4	137	21	16	31	31	1.95
34350113--34350156	19	2.4	19	85	7	56	50	0	9	40	1.34
34354025--34354068	19	2.4	19	85	7	56	50	0	9	40	1.34
34364202--34364286	43	2.0	43	92	0	143	25	17	28	28	1.98
34366345--34366383	19	2.1	19	100	0	78	33	35	0	30	1.58
34368260--34368442	39	4.6	39	87	0	240	22	30	22	24	1.99
34375655--34375837	39	4.6	39	87	0	240	22	30	22	24	1.99
34384047--34384092	24	1.9	24	86	0	65	34	26	13	26	1.92
34384135--34384195	20	3.0	20	90	0	95	36	11	19	32	1.88
34384244--34384386	24	6.0	24	91	4	209	28	22	22	26	1.99
34384244--34384386	47	3.0	47	90	5	207	28	22	22	26	1.99
34384244--34384387	71	2.0	72	89	4	220	29	22	22	26	1.99
34384578--34384639	30	2.1	30	90	0	97	37	16	22	24	1.94
34392030--34392077	25	1.9	25	86	0	69	33	25	16	25	1.96
34392116--34392191	9	7.9	9	70	18	55	34	9	21	35	1.85
34392114--34392195	20	4.2	20	95	1	148	35	12	19	32	1.89
34392249--34392367	48	2.5	47	88	9	170	28	21	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34392249--34392367	23	5.0	24	87	9	172	28	21	22	27	1.99
34392559--34392639	31	2.6	31	88	5	119	34	17	25	22	1.95
34398144--34398207	31	2.1	31	96	0	119	23	21	15	39	1.92
34398399--34398517	24	5.0	24	85	9	154	26	24	21	27	1.99
34398399--34398517	47	2.5	48	89	8	172	26	24	21	27	1.99
34398568--34398627	20	3.0	20	90	0	102	31	20	11	36	1.88
34398670--34398717	25	1.9	25	86	0	69	25	16	25	33	1.96
34407290--34407421	29	4.5	29	97	1	246	24	24	14	37	1.92
34407290--34407421	59	2.3	59	97	1	248	24	24	14	37	1.92
34408719--34408754	18	1.9	18	88	5	54	11	25	0	63	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292