genome.fa.s9.2.7.7.80.10.50.1000.243.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  243  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70615234--70615281	25	1.9	25	100	0	96	43	10	4	41	1.58
70615241--70615294	25	2.2	25	83	6	65	48	11	3	37	1.57
70620087--70620120	13	2.6	14	86	13	54	32	17	5	44	1.73
70622875--70622914	6	6.5	6	91	5	62	87	0	12	0	0.54
70622875--70622925	12	4.0	12	85	10	66	84	0	15	0	0.63
70623549--70623600	25	2.1	25	100	0	104	34	25	11	28	1.91
70625382--70625443	33	1.9	33	83	9	83	56	8	1	33	1.38
70630586--70630625	17	2.3	18	91	4	64	67	2	15	15	1.34
70630645--70630700	12	4.8	12	78	10	53	67	0	7	25	1.15
70633857--70633891	18	1.9	18	88	0	52	11	20	11	57	1.64
70639069--70639147	39	2.1	38	95	2	140	31	11	15	41	1.82
70639761--70639819	30	2.0	30	93	0	100	55	11	3	28	1.52
70641306--70641361	29	1.9	29	82	7	69	41	1	5	51	1.35
70641913--70641937	6	4.2	6	100	0	50	68	0	0	32	0.90
70643409--70643456	23	2.0	24	96	4	89	70	2	0	27	0.98
70647128--70647166	19	2.1	19	90	4	62	48	2	2	46	1.29
70652826--70652878	22	2.3	23	78	21	58	41	13	0	45	1.43
70655053--70655091	9	4.0	10	83	16	55	69	2	0	28	1.02
70655053--70655091	19	2.0	20	90	5	62	69	2	0	28	1.02
70655053--70655093	10	4.3	9	84	9	55	70	2	0	26	0.99
70656278--70656347	33	2.1	34	91	2	115	25	24	12	37	1.91
70657083--70657134	27	1.9	27	84	7	70	19	23	15	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70657095--70657154	27	2.2	27	82	5	77	18	26	15	40	1.90
70662854--70662911	30	1.9	30	93	6	100	51	0	0	48	1.00
70662855--70662910	17	3.6	17	73	26	61	50	0	0	50	1.00
70663021--70663065	23	1.9	23	86	4	63	57	0	2	40	1.11
70663309--70663348	12	3.2	13	85	7	55	67	7	0	25	1.16
70663839--70663864	5	5.2	5	100	0	52	61	0	0	38	0.96
70665238--70665421	3	61.3	3	71	14	87	25	7	4	62	1.41
70665238--70665306	31	2.2	31	81	0	84	26	10	4	59	1.48
70665544--70665606	3	21.0	3	93	0	108	33	3	0	63	1.10
70665747--70665803	24	2.3	25	77	17	64	29	1	1	66	1.12
70665766--70665799	15	2.3	15	89	0	50	32	2	2	61	1.26
70672324--70672353	14	2.1	14	93	0	51	30	13	16	40	1.87
70681850--70681917	26	2.6	25	90	9	102	35	4	5	54	1.45
70681850--70681905	26	2.2	26	100	0	112	35	3	7	53	1.46
70681896--70681934	18	2.3	18	86	8	55	35	2	2	58	1.25
70681919--70682010	3	30.3	3	68	22	50	29	5	2	63	1.29
70681826--70681962	12	11.3	12	68	25	51	34	3	4	57	1.36
70683964--70684182	3	72.3	3	74	14	157	27	5	3	63	1.33
70697888--70697950	3	21.0	3	96	0	117	33	1	0	65	1.03
70697973--70698013	4	10.8	4	84	10	50	19	0	4	75	0.98
70698093--70698149	24	2.3	25	77	17	64	29	1	1	66	1.12
70698112--70698145	15	2.3	15	89	0	50	32	2	2	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70710980--70711022	21	2.0	21	86	8	61	55	16	0	27	1.41
70723404--70723578	46	3.8	46	76	13	187	30	29	19	20	1.97
70723412--70723582	93	1.8	93	93	0	297	29	29	19	20	1.97
70724136--70724172	20	1.9	18	89	10	56	35	21	0	43	1.53
70724738--70724769	16	2.0	16	93	0	55	40	40	6	12	1.68
70725335--70725367	16	2.0	17	88	5	50	81	0	3	15	0.80
70726343--70726400	2	28.0	2	94	3	98	48	1	1	48	1.22
70730783--70730897	44	2.6	44	85	2	149	35	13	22	27	1.92
70730783--70730916	46	3.0	45	82	4	153	35	14	23	26	1.93
70736925--70737039	44	2.6	44	85	2	149	35	13	22	27	1.92
70736925--70737058	46	3.0	45	82	4	153	35	14	23	26	1.93
70747665--70747979	74	4.3	71	80	6	335	28	15	21	33	1.94
70747665--70747979	144	2.2	145	81	5	366	28	15	21	33	1.94
70748036--70748203	88	1.9	88	87	2	248	27	18	19	35	1.95
70749076--70749107	16	2.0	16	93	0	55	40	40	6	12	1.68
70749618--70749646	7	4.1	7	100	0	58	86	0	0	13	0.58
70750633--70750671	2	18.5	2	92	5	60	46	2	2	48	1.29
70752632--70752665	2	17.0	2	100	0	68	50	0	0	50	1.00
70753006--70753035	16	1.9	15	93	6	51	90	0	10	0	0.47
70758500--70758729	36	6.7	36	70	12	135	36	14	12	35	1.85
70758593--70758783	18	10.6	18	73	10	149	37	16	11	34	1.85
70758592--70758783	54	3.5	55	76	5	178	36	16	11	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70758959--70759067	45	2.4	45	85	0	155	43	19	17	20	1.89
70759045--70759069	12	2.1	12	100	0	50	40	20	24	16	1.91
70760250--70760311	31	2.0	31	100	0	124	32	16	0	51	1.44
70760839--70760901	31	2.0	32	84	9	85	47	4	0	47	1.23
70764339--70764388	6	8.2	6	95	4	91	84	0	0	16	0.63
70764339--70764388	19	2.7	18	96	3	91	84	0	0	16	0.63
70771021--70771138	59	2.0	59	100	0	236	25	13	23	37	1.92
70773696--70773720	3	8.3	3	100	0	50	68	0	0	32	0.90
70774691--70774730	9	4.4	9	87	12	64	32	2	0	65	1.06
70777344--70777424	42	1.9	42	84	0	108	14	34	24	25	1.94
70779774--70779829	13	4.0	13	74	17	58	28	17	14	39	1.89
70784801--70785025	107	2.2	104	80	11	241	39	10	12	37	1.78
70790058--70790087	14	2.1	14	93	0	51	30	0	0	70	0.88
70793089--70793114	4	6.5	4	100	0	52	76	0	0	23	0.78
70793951--70793985	2	17.5	2	100	0	70	51	0	0	48	1.00
70795648--70795758	44	2.5	44	75	5	100	32	23	19	24	1.98
70795994--70796210	88	2.5	88	79	3	231	27	19	21	32	1.97
70802817--70802869	26	2.0	26	82	7	63	26	15	20	37	1.92
70804354--70804489	26	5.2	26	96	0	245	35	25	6	33	1.82
70811167--70811192	4	6.5	4	100	0	52	76	0	0	23	0.78
70815068--70815153	46	1.9	45	85	4	120	29	29	20	20	1.98
70819352--70819381	14	2.1	14	93	0	51	53	3	3	40	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70821738--70821864	33	3.8	32	69	11	94	33	14	22	28	1.94
70825326--70825371	17	2.8	16	86	6	65	73	2	0	23	0.94
70846682--70846761	35	2.3	36	77	12	85	37	1	2	58	1.19
70848724--70848757	15	2.3	15	90	5	52	88	2	8	0	0.62
70848753--70848787	15	2.3	15	85	0	52	60	31	0	8	1.27
70851339--70851374	12	3.0	12	95	0	63	27	25	5	41	1.77
70856312--70856698	70	6.0	64	71	19	277	27	14	22	35	1.93
70856478--70856899	70	6.2	68	76	12	399	24	14	22	39	1.91
70856314--70856902	262	2.3	257	94	3	1024	25	14	22	36	1.93
70856620--70856865	121	2.0	124	89	3	383	24	13	22	39	1.90
70856740--70856905	72	2.3	71	88	4	244	22	15	21	41	1.89
70857130--70857274	74	1.9	76	88	5	224	30	18	22	28	1.97
70856970--70857447	165	2.9	166	90	3	705	29	17	20	31	1.96
70857304--70857810	72	6.5	73	75	12	397	29	16	19	34	1.94
70857662--70857697	14	2.7	13	86	4	54	30	13	5	50	1.65
70857606--70857767	88	1.8	88	85	2	227	26	17	19	36	1.94
70857792--70857853	30	2.1	30	90	6	99	19	9	29	41	1.83
70857443--70858021	254	2.3	248	85	6	744	28	16	18	36	1.93
70858665--70858700	16	2.3	16	90	4	56	88	2	8	0	0.59
70858696--70858730	15	2.3	15	85	0	52	60	31	0	8	1.27
70862070--70862184	42	2.7	42	85	4	151	29	24	13	32	1.94
70862114--70862277	47	3.6	47	79	11	146	31	23	14	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70862299--70862447	31	4.8	31	94	1	246	25	26	19	28	1.99
70862423--70862598	50	3.5	50	92	0	271	26	23	15	34	1.94
70866491--70866603	43	2.6	41	82	8	120	29	13	23	33	1.93
70877575--70877660	26	3.3	26	88	0	127	39	22	20	17	1.92
70877575--70877680	52	2.0	52	85	3	142	38	20	21	18	1.93
70877442--70877675	26	9.4	26	70	12	93	35	21	25	17	1.96
70878685--70878712	13	2.2	13	100	0	56	14	14	0	71	1.15
70881265--70881302	2	19.5	2	86	5	51	50	47	2	0	1.15
70881302--70881361	2	30.0	2	89	0	93	0	51	0	48	1.00
70883907--70884011	25	4.2	26	89	6	171	35	24	6	33	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292