genome.fa.s9.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  123  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36905162--36905237	29	2.6	29	78	0	89	22	19	35	22	1.96
36905105--36905237	58	2.3	58	80	2	133	24	17	33	24	1.96
36909602--36909724	45	2.8	44	80	7	135	33	26	16	24	1.96
36910842--36910870	14	2.0	15	93	6	51	51	20	0	27	1.47
36911175--36911203	14	2.0	15	93	6	51	27	0	20	51	1.47
36916153--36916178	13	2.0	13	100	0	52	38	23	15	23	1.92
36918081--36918263	39	4.6	39	86	0	231	23	30	21	24	1.99
36920367--36920579	47	4.6	44	82	8	214	25	30	16	27	1.97
36920367--36920582	94	2.3	90	81	8	249	25	30	17	26	1.97
36925921--36926002	27	3.0	27	78	7	103	35	15	21	26	1.94
36925913--36926017	54	2.0	54	84	1	140	36	18	20	24	1.95
36927105--36927444	27	12.6	27	84	6	411	28	23	9	39	1.85
36927423--36927508	27	3.2	27	74	0	82	38	25	6	29	1.82
36928766--36928822	9	5.9	9	73	15	51	35	8	21	35	1.84
36928764--36928826	20	3.2	20	95	0	117	36	12	19	31	1.89
36928880--36929044	23	7.0	24	87	5	221	29	23	21	26	1.99
36928880--36929045	24	7.0	23	86	7	219	29	22	21	26	1.99
36928880--36929044	71	2.3	70	90	4	251	29	23	21	26	1.99
36929235--36929298	31	2.1	31	90	0	101	35	15	23	25	1.94
36930579--36930662	27	3.1	27	74	16	75	19	17	21	41	1.90
36930579--36930686	54	2.0	53	82	5	128	19	18	20	41	1.90
36930804--36930903	6	16.3	6	70	15	71	21	18	14	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36930807--36930871	25	2.6	25	90	0	94	21	20	15	43	1.88
36933038--36933132	29	3.2	30	92	4	158	32	15	26	25	1.96
36933034--36933169	59	2.3	58	82	5	159	28	15	30	25	1.96
36936258--36936391	27	5.0	27	84	0	180	36	18	20	24	1.95
36937002--36937059	28	2.1	27	83	3	71	18	20	22	37	1.94
36937211--36937268	25	2.3	25	78	0	62	24	17	10	48	1.78
36938728--36938772	17	2.5	17	80	19	56	17	31	35	15	1.92
36939469--36939576	27	4.0	27	77	8	105	19	19	22	38	1.93
36939469--36939576	54	2.0	53	83	1	135	19	19	22	38	1.93
36939694--36939880	6	30.3	6	68	19	100	20	17	12	48	1.80
36939697--36939761	25	2.6	25	80	0	76	20	18	13	47	1.82
36939717--36939798	37	2.2	37	86	0	110	21	17	13	47	1.81
36939753--36939816	25	2.6	25	79	0	74	20	18	12	48	1.80
36939694--36939860	62	2.7	62	89	0	253	20	17	12	48	1.80
36939784--36939871	37	2.4	37	82	0	113	19	18	12	50	1.78
36939717--36939829	31	3.6	31	75	13	115	22	16	12	48	1.79
36940887--36940948	31	2.0	31	100	0	124	19	25	29	25	1.99
36950482--36950717	50	4.9	46	77	8	204	25	29	17	27	1.98
36950528--36950719	50	3.9	50	85	4	259	25	30	17	27	1.97
36955593--36955652	20	3.0	21	90	7	97	35	11	18	35	1.87
36955702--36955848	24	6.2	23	88	3	204	29	21	20	27	1.98
36955702--36955848	47	3.1	47	87	2	206	29	21	20	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36955702--36955848	71	2.1	71	90	0	240	29	21	20	27	1.98
36956060--36956123	31	2.1	31	87	0	92	37	15	23	23	1.93
36968612--36968777	40	4.2	40	81	1	174	24	26	22	26	2.00
36976582--36976645	31	2.1	31	93	0	110	23	23	15	37	1.93
36976852--36976979	24	5.4	24	89	2	179	25	21	21	30	1.99
36976859--36976978	23	5.1	23	90	1	168	26	20	22	30	1.99
36977032--36977075	20	2.2	20	100	0	88	34	18	11	36	1.86
36979790--36979881	29	3.2	29	89	4	134	26	15	30	28	1.96
36979773--36979881	57	1.9	56	83	7	139	25	14	30	29	1.95
36981758--36982045	143	2.0	144	98	0	560	30	12	20	36	1.89
36985097--36985131	12	3.0	12	91	4	54	42	2	0	54	1.15
36986508--36986692	40	4.7	40	85	2	205	25	25	23	24	2.00
36992792--36992834	16	2.7	16	96	0	77	60	18	11	9	1.57
36993054--36993133	29	2.8	28	83	7	99	23	16	33	26	1.95
37012071--37012169	25	4.0	25	74	0	72	27	26	22	24	2.00
37014204--37014251	25	1.9	25	86	0	69	33	25	16	25	1.96
37014288--37014354	20	3.3	20	91	0	107	32	11	20	34	1.90
37014402--37014506	23	4.4	24	86	3	142	27	20	20	31	1.97
37014404--37014499	47	2.1	46	88	5	140	27	20	19	32	1.97
37014713--37014776	31	2.1	31	90	0	101	37	14	23	25	1.92
37017272--37017419	42	3.5	42	77	8	131	26	16	25	31	1.97
37019250--37019457	40	5.2	40	82	2	202	25	23	25	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37019252--37019457	80	2.6	80	83	3	236	25	23	26	24	2.00
37027300--37027507	40	5.2	40	82	2	202	25	23	25	25	2.00
37027302--37027507	80	2.6	80	83	3	236	25	23	26	24	2.00
37029090--37029119	15	2.0	15	100	0	60	40	0	33	26	1.57
37034642--37034801	29	5.5	29	80	4	171	26	30	16	27	1.97
37042485--37042650	43	3.9	42	70	13	117	28	16	22	33	1.95
37045656--37045715	30	2.0	30	87	6	86	40	6	25	28	1.80
37050651--37050704	27	2.0	27	85	3	74	35	20	22	22	1.96
37050705--37050850	27	5.4	27	86	3	168	26	19	17	36	1.94
37056696--37056727	2	16.0	2	100	0	64	50	0	0	50	1.00
37056762--37056813	27	2.0	26	84	3	68	34	21	26	17	1.95
37057069--37057102	18	2.0	17	88	11	52	5	35	29	29	1.81
37057410--37057463	27	2.0	27	89	3	83	37	20	20	22	1.95
37057464--37057609	27	5.4	27	86	0	184	26	19	18	35	1.95
37060553--37060723	93	1.8	93	96	0	315	28	28	21	21	1.99
37060548--37060720	46	3.7	46	78	13	210	28	27	21	21	1.99
37061141--37061200	30	2.0	30	90	0	93	30	25	8	36	1.85
37068121--37068291	93	1.8	93	97	0	324	28	28	21	21	1.98
37068116--37068288	46	3.7	46	79	13	219	29	27	20	21	1.98
37068709--37068768	30	2.0	30	90	0	93	30	25	8	36	1.85
37069684--37069842	27	5.9	27	84	2	185	25	15	19	39	1.91
37070705--37070794	45	2.0	45	97	0	171	31	21	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37075221--37075320	29	3.5	29	83	1	121	27	18	28	27	1.98
37077074--37077217	27	5.3	27	87	3	191	28	23	6	40	1.80
37077236--37077335	27	3.7	27	88	7	96	40	19	10	31	1.84
37077249--37077427	81	2.2	80	84	4	234	41	18	7	31	1.79
37077249--37077511	27	9.7	27	79	6	201	40	18	8	32	1.81
37077530--37077603	27	2.7	27	76	12	71	37	20	20	21	1.94
37077543--37077607	27	2.4	27	82	5	78	35	18	24	21	1.96
37078411--37078502	25	3.7	25	91	0	139	27	26	21	25	2.00
37078409--37078541	50	2.6	51	77	8	139	30	22	21	25	1.98
37078653--37078742	42	2.2	41	93	2	153	27	12	22	37	1.90
37081152--37081227	6	12.3	6	76	15	75	51	15	14	18	1.77
37081592--37081650	22	2.7	21	78	5	55	32	22	25	20	1.98
37081826--37081856	16	1.9	16	100	0	62	32	19	19	29	1.96
37081998--37082405	27	15.3	27	88	3	531	26	22	18	32	1.97
37082390--37082461	27	2.7	26	89	6	108	29	9	23	37	1.87
37082507--37082757	27	9.3	27	82	6	273	37	8	23	30	1.84
37082507--37082757	81	3.1	80	87	2	340	37	8	23	30	1.84
37082508--37082759	54	4.7	54	90	0	369	38	8	22	30	1.84
37082770--37082941	26	6.5	27	81	9	194	30	11	19	38	1.86
37082770--37082941	53	3.3	52	83	6	213	30	11	19	38	1.86
37084557--37084646	27	3.3	27	92	0	144	24	24	11	40	1.87
37084659--37084802	27	5.4	27	85	2	130	39	22	9	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37084645--37084799	54	2.9	54	84	2	170	38	20	10	30	1.87
37084678--37084827	27	5.6	27	85	2	196	42	22	7	28	1.80
37084678--37084826	81	1.9	80	88	4	228	42	21	7	28	1.80
37084678--37084909	54	4.3	54	78	6	202	40	20	8	30	1.82
37084839--37084890	27	1.9	27	88	7	79	40	13	11	34	1.81
37084943--37085007	27	2.4	27	82	5	78	35	18	24	21	1.96
37085816--37085907	25	3.7	25	88	2	123	29	23	20	26	1.99
37086058--37086145	42	2.1	42	93	0	149	29	11	18	40	1.85
37086239--37086293	29	1.9	28	88	3	83	21	23	27	27	1.99
37089905--37089934	14	2.1	15	93	6	53	63	13	10	13	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292