genome.fa.s9.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  142  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42181321--42181430	26	4.2	26	92	0	175	37	23	5	33	1.78
42182280--42182438	27	5.9	27	82	11	184	35	22	23	18	1.96
42182298--42182438	54	2.6	54	93	2	239	35	24	23	17	1.95
42184026--42184133	26	4.2	26	93	0	189	36	24	7	32	1.83
42184740--42184785	23	2.0	23	86	4	65	41	15	8	34	1.78
42193124--42193335	46	4.6	44	73	11	149	28	19	27	23	1.98
42194298--42194355	28	2.0	28	83	9	73	22	22	39	15	1.91
42198751--42198785	19	1.9	19	88	11	56	45	5	5	42	1.51
42198780--42198853	37	2.0	38	97	2	141	56	2	2	37	1.28
42199690--42199747	27	2.1	28	84	9	75	31	20	6	41	1.79
42199688--42199751	13	4.8	13	73	17	60	35	20	6	37	1.78
42200914--42200952	3	13.0	3	88	0	60	69	0	28	2	1.02
42204037--42204062	3	8.7	3	100	0	52	30	0	0	69	0.89
42212483--42212521	18	2.2	17	86	9	51	41	2	0	56	1.13
42212507--42212549	22	2.0	20	82	8	50	55	4	0	39	1.20
42212542--42212600	26	2.2	27	79	11	68	49	1	1	47	1.21
42212609--42212658	14	3.3	15	78	15	59	50	0	4	46	1.20
42213006--42213046	22	2.0	21	90	9	66	51	9	0	39	1.35
42217214--42217308	40	2.4	40	98	0	181	20	20	30	29	1.97
42225248--42225462	40	5.4	40	96	0	394	22	19	29	28	1.98
42235589--42235642	20	2.7	20	70	0	54	31	18	27	22	1.97
42244886--42244962	33	2.3	34	84	6	95	24	22	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42251040--42251219	40	4.5	40	79	6	186	23	26	23	26	2.00
42259100--42259292	80	2.4	80	82	4	219	22	26	23	26	2.00
42259114--42259293	40	4.5	39	81	6	173	23	26	23	26	2.00
42260000--42260027	2	14.0	2	100	0	56	50	0	0	50	1.00
42261340--42261426	24	3.6	24	90	4	131	36	25	16	21	1.94
42261318--42261429	24	4.7	24	85	6	122	34	23	16	25	1.95
42267865--42267951	24	3.6	24	90	4	131	36	25	16	21	1.94
42267843--42267954	24	4.7	24	85	6	122	34	23	16	25	1.95
42272011--42272181	43	4.0	43	76	6	159	33	25	14	27	1.94
42273420--42273795	182	2.1	183	84	3	481	22	22	29	25	1.99
42283691--42283781	27	3.4	26	84	4	110	18	21	17	41	1.90
42283691--42283805	53	2.1	54	84	4	144	18	19	20	42	1.89
42283797--42283949	27	5.7	27	92	0	234	35	14	16	33	1.89
42286260--42286321	26	2.3	27	83	10	83	37	29	8	25	1.85
42286426--42286542	28	4.2	28	84	2	148	20	20	21	37	1.94
42292798--42292971	84	2.1	84	97	0	330	23	17	36	22	1.94
42294922--42295105	40	4.7	40	80	10	218	26	27	21	25	1.99
42294922--42295105	78	2.3	80	80	9	207	26	27	21	25	1.99
42297046--42297177	29	4.6	29	83	1	149	25	32	16	25	1.96
42304393--42304524	29	4.6	29	83	1	149	25	32	16	25	1.96
42308260--42308368	28	3.9	28	79	5	114	22	18	21	37	1.94
42308256--42308372	56	2.1	54	81	10	139	21	18	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42311435--42311687	129	2.0	130	89	2	393	37	18	16	26	1.93
42317402--42317603	79	2.5	79	85	5	273	27	29	19	23	1.98
42317418--42317603	40	4.7	40	87	3	252	25	29	20	24	1.99
42325451--42325618	40	4.2	40	72	7	108	25	26	21	27	1.99
42329068--42329177	56	2.0	54	82	10	134	37	18	16	28	1.92
42330368--42330523	40	3.9	39	76	15	142	26	21	27	23	1.99
42330411--42330539	40	3.2	40	81	2	152	24	23	27	24	2.00
42334949--42335139	39	4.9	39	94	0	310	24	21	30	22	1.99
42334947--42335198	78	3.2	78	85	4	258	25	21	30	23	1.99
42337268--42337345	35	2.3	34	80	8	79	24	24	25	25	2.00
42346329--42346410	41	2.0	41	100	0	164	41	21	9	26	1.84
42350346--42350513	40	4.2	40	82	2	196	25	27	22	25	2.00
42353723--42353791	27	2.5	28	90	2	113	28	13	26	31	1.93
42355788--42355830	2	21.5	2	100	0	86	48	0	0	51	1.00
42369226--42369375	27	5.6	27	80	3	88	38	22	7	32	1.81
42369264--42369375	54	2.1	54	84	0	143	40	21	6	32	1.78
42369280--42369403	54	2.3	54	91	0	194	42	18	7	31	1.77
42369280--42369403	27	4.6	27	85	2	169	42	18	7	31	1.77
42369386--42369447	27	2.3	27	94	0	106	41	16	14	27	1.87
42369280--42369429	54	2.8	54	85	4	160	42	18	8	30	1.80
42369280--42369432	81	1.9	81	85	5	211	41	18	8	31	1.80
42370067--42370135	28	2.5	28	95	2	122	43	27	10	18	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42398893--42399075	39	4.6	39	87	0	240	24	22	30	22	1.99
42406322--42406504	39	4.6	39	87	0	240	24	22	30	22	1.99
42416530--42416672	38	3.5	40	80	15	154	25	21	29	23	1.99
42424497--42424647	40	3.8	40	77	13	134	27	23	26	22	2.00
42424534--42424663	40	3.2	40	77	4	138	24	23	27	23	2.00
42426598--42426642	23	2.0	22	86	4	63	53	33	2	11	1.49
42427179--42427325	43	3.4	42	80	5	152	33	21	17	27	1.96
42427162--42427325	86	1.9	85	82	8	208	32	23	16	27	1.96
42430264--42430426	32	5.0	33	87	3	179	33	22	11	32	1.90
42430419--42430517	29	3.4	29	88	2	153	26	31	9	33	1.87
42434990--42435023	16	2.1	17	88	5	52	8	14	2	73	1.19
42444317--42444410	40	2.3	40	81	0	116	27	13	26	31	1.94
42446252--42446459	40	5.2	40	82	1	184	21	26	24	27	1.99
42446278--42446459	80	2.3	80	83	0	220	21	26	23	28	1.99
42453778--42453999	46	4.8	46	81	6	252	21	20	28	29	1.98
42453775--42453945	93	1.8	93	93	0	297	21	21	28	29	1.98
42460337--42460370	16	2.2	15	89	5	50	55	0	0	44	0.99
42460436--42460494	30	2.0	30	83	6	75	49	11	5	33	1.62
42466409--42466626	40	5.5	40	91	2	307	23	28	24	23	2.00
42475851--42476058	40	5.2	40	81	1	175	21	26	23	28	1.99
42475877--42476058	80	2.3	80	82	0	211	21	26	23	28	1.99
42480478--42480570	42	2.2	43	83	9	127	29	26	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42483307--42483337	16	1.9	16	93	0	53	35	22	0	41	1.54
42483304--42483343	20	2.0	20	85	0	53	37	22	0	40	1.54
42483529--42483780	55	4.8	53	79	8	214	22	25	17	34	1.96
42490993--42491023	16	1.9	16	93	0	53	35	22	0	41	1.54
42490990--42491029	20	2.0	20	85	0	53	37	22	0	40	1.54
42491270--42491465	55	3.6	53	78	6	198	21	27	18	32	1.97
42497796--42497979	67	2.8	64	78	10	196	30	17	29	22	1.96
42497772--42497925	67	2.3	64	83	7	182	33	16	28	20	1.95
42499881--42499907	8	3.4	8	100	0	54	51	14	11	22	1.73
42501798--42502109	156	2.0	156	99	0	615	28	27	17	27	1.98
42503863--42503982	43	2.8	43	78	3	118	33	22	13	30	1.92
42504099--42504124	5	5.2	5	100	0	52	42	19	0	38	1.51
42507613--42507729	42	2.8	41	79	13	139	29	23	16	31	1.96
42507897--42507938	20	2.1	20	90	0	66	40	11	2	45	1.54
42508431--42508538	26	4.2	25	87	4	155	35	5	23	36	1.78
42513219--42513267	21	2.3	21	96	3	89	38	4	20	36	1.72
42515636--42515683	11	4.4	11	79	10	53	64	2	0	33	1.05
42517966--42518016	3	17.0	3	100	0	102	66	0	0	33	0.92
42521063--42521101	19	2.1	19	86	13	55	71	2	25	0	0.98
42527561--42527628	32	2.1	32	88	0	100	20	42	19	17	1.89
42527580--42527641	32	1.9	32	90	0	97	24	41	16	17	1.89
42532216--42532403	100	1.9	100	93	0	322	27	20	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42532113--42532408	49	5.9	49	80	3	306	27	19	25	28	1.99
42535694--42535839	37	3.9	37	93	1	231	28	30	17	23	1.97
42535884--42536077	48	4.0	48	93	0	316	30	27	6	35	1.83
42546302--42546415	30	3.4	34	76	11	83	28	2	11	57	1.48
42546345--42546407	30	2.1	30	90	0	99	25	1	15	57	1.48
42546529--42546559	11	2.8	11	90	0	53	67	0	0	32	0.91
42546529--42546563	11	3.1	11	91	4	52	65	0	0	34	0.93
42552042--42552111	35	2.0	35	100	0	140	25	20	20	34	1.96
42558941--42559085	60	2.4	60	90	4	238	35	22	14	27	1.93
42563015--42563595	27	21.6	27	85	3	726	28	22	9	39	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292