genome.fa.s9.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  150  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44476277--44476363	27	3.2	26	87	9	113	19	18	19	42	1.89
44476247--44476363	54	2.2	54	83	6	139	21	17	18	41	1.90
44476355--44476509	27	5.7	27	87	0	166	34	16	17	31	1.93
44476355--44476507	81	1.9	81	87	0	216	34	16	16	32	1.92
44476378--44476510	27	4.9	27	90	0	203	33	15	18	33	1.91
44478265--44478498	40	5.8	40	91	3	330	25	24	20	29	1.99
44478237--44478498	120	2.2	120	85	8	363	25	25	20	28	1.99
44484182--44484343	39	4.2	39	91	2	245	23	20	32	24	1.98
44484194--44484343	77	1.9	78	93	2	257	24	20	32	23	1.98
44489771--44489996	40	5.7	40	85	6	255	25	26	20	27	1.99
44491960--44492149	24	8.0	24	89	4	278	25	21	23	29	1.99
44491985--44492149	47	3.5	47	93	1	276	26	20	24	29	1.99
44491960--44492150	71	2.7	72	89	4	289	25	20	23	29	1.99
44492261--44492308	25	1.9	25	82	0	60	25	14	25	35	1.94
44493549--44494024	27	17.6	27	85	5	586	40	9	21	27	1.85
44505132--44505291	29	5.5	30	89	5	229	33	13	25	27	1.93
44505132--44505291	59	2.8	57	90	2	230	33	13	25	27	1.93
44516538--44516697	29	5.5	30	88	8	222	33	13	25	27	1.94
44516538--44516697	59	2.8	57	89	4	223	33	13	25	27	1.94
44524455--44524554	28	3.4	30	83	6	125	31	14	26	29	1.94
44524455--44524554	29	3.4	29	81	9	114	31	14	26	29	1.94
44528052--44528248	55	3.6	54	78	5	211	40	17	22	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44528052--44528255	53	3.8	54	79	3	223	40	17	23	19	1.91
44534811--44534859	20	2.5	20	100	0	98	28	24	16	30	1.96
44539623--44539696	24	3.1	24	86	0	94	33	33	12	20	1.89
44549782--44549989	40	5.2	39	84	1	218	25	25	22	25	2.00
44549782--44549987	80	2.6	81	84	3	247	25	26	22	25	2.00
44553505--44553630	39	3.2	39	70	6	117	29	25	19	25	1.99
44553541--44553672	42	3.2	41	67	10	108	28	26	18	26	1.98
44553488--44553673	81	2.3	81	89	1	284	28	26	19	25	1.99
44556618--44556659	21	2.0	21	100	0	84	33	28	4	33	1.78
44561353--44561494	39	3.6	39	77	7	160	27	26	21	24	1.99
44561392--44561536	42	3.5	42	74	5	143	27	27	19	25	1.99
44561352--44561537	81	2.3	81	92	1	302	27	26	19	26	1.99
44567092--44567122	16	1.9	16	100	0	62	19	51	22	6	1.69
44584798--44584906	40	2.7	40	100	0	218	23	27	22	25	2.00
44600320--44600462	51	3.0	49	70	11	120	31	27	16	23	1.96
44605561--44605613	27	2.0	27	92	0	88	15	24	22	37	1.92
44605726--44605784	31	1.9	31	96	0	109	27	16	18	37	1.93
44608386--44608543	7	22.0	7	71	7	75	42	36	0	20	1.57
44608394--44608546	43	3.5	43	75	9	132	42	35	0	21	1.58
44608496--44608543	15	3.3	15	85	5	62	45	33	2	18	1.61
44608386--44608546	22	7.5	22	72	10	109	42	36	0	21	1.58
44610083--44610136	28	1.9	28	92	0	90	40	20	7	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44612034--44612082	25	1.9	26	87	4	73	40	0	2	57	1.10
44612080--44612118	2	19.5	2	100	0	78	48	0	0	51	1.00
44613891--44613986	47	2.0	47	97	0	183	39	11	5	43	1.63
44617046--44617111	31	2.1	33	88	5	100	57	3	0	39	1.14
44619835--44619868	2	17.0	2	100	0	68	50	0	0	50	1.00
44621777--44621900	63	2.0	63	91	0	203	30	13	14	41	1.85
44633430--44633504	39	1.9	39	81	10	91	37	6	4	52	1.47
44633656--44633689	2	17.5	2	93	6	61	52	0	0	47	1.00
44635742--44635802	31	2.0	31	83	6	79	42	8	11	37	1.71
44636281--44636335	16	3.5	16	82	5	67	38	5	25	30	1.79
44636317--44636405	44	2.0	44	84	8	117	37	5	19	38	1.75
44636529--44636649	61	2.0	61	85	6	163	53	4	1	40	1.30
44641699--44641777	38	2.1	38	80	0	86	40	29	17	12	1.87
44649364--44649568	40	5.1	40	85	4	245	27	27	20	24	1.99
44657514--44657694	39	4.7	40	84	10	225	27	27	20	24	1.99
44657514--44657692	77	2.3	80	83	10	228	26	27	20	25	1.99
44662480--44662598	49	2.5	49	80	11	140	42	22	11	23	1.87
44662588--44662639	26	2.0	26	100	0	104	38	23	19	19	1.93
44665343--44665405	31	2.0	31	100	0	126	46	3	22	28	1.67
44667428--44667742	48	6.6	48	76	7	255	28	18	28	23	1.98
44667413--44667742	96	3.4	96	83	0	374	28	18	29	23	1.98
44667835--44667878	22	2.0	22	100	0	88	36	4	27	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44673323--44673392	34	2.1	34	97	0	131	27	4	20	48	1.68
44677790--44677837	25	1.9	25	86	0	69	33	25	16	25	1.96
44677881--44677939	20	3.0	20	92	0	100	37	11	20	30	1.89
44677990--44678108	47	2.5	48	89	8	172	27	21	24	26	1.99
44677990--44678108	24	5.0	24	84	9	154	27	21	24	26	1.99
44678298--44678394	31	3.1	31	98	0	185	39	15	22	22	1.92
44687406--44687633	48	4.8	47	82	5	251	25	19	30	24	1.98
44687394--44687630	96	2.5	96	90	0	366	25	18	29	26	1.98
44689522--44689790	141	1.9	141	92	0	448	35	10	22	31	1.88
44693412--44693537	40	3.2	39	80	6	139	21	25	24	28	1.99
44693351--44693537	80	2.3	80	78	12	204	22	27	24	25	2.00
44701459--44701584	40	3.2	39	80	6	139	21	25	24	28	1.99
44701398--44701584	80	2.3	80	78	12	204	22	27	24	25	2.00
44707682--44707710	14	2.1	14	100	0	58	58	0	0	41	0.98
44710103--44710202	47	2.1	47	85	3	130	22	21	17	40	1.92
44714728--44714810	41	2.0	41	100	0	166	37	24	21	16	1.94
44714795--44714914	47	2.6	47	91	0	195	38	12	23	25	1.90
44714895--44715102	53	3.8	55	83	6	246	36	17	25	21	1.95
44714903--44715121	108	2.0	109	84	4	291	36	17	24	21	1.94
44717412--44717447	18	2.0	18	94	0	63	47	25	0	27	1.52
44720537--44720579	10	4.3	10	82	11	61	20	6	2	69	1.23
44726958--44727002	21	2.1	21	95	0	81	26	2	0	71	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44728951--44729002	10	5.1	10	88	2	68	23	5	0	71	1.07
44730825--44730920	45	2.1	45	86	0	129	26	16	28	29	1.97
44731497--44731540	18	2.4	18	96	0	79	27	18	20	34	1.96
44733797--44733853	22	2.6	22	81	13	64	31	22	0	45	1.53
44734757--44734784	2	14.0	2	100	0	56	50	0	0	50	1.00
44734901--44734977	5	15.8	5	71	24	58	55	2	0	41	1.13
44734907--44734961	8	6.2	8	82	15	56	56	1	0	41	1.10
44738108--44738163	25	2.2	25	93	0	94	16	30	32	21	1.95
44743074--44743239	43	3.9	43	76	10	169	32	27	16	23	1.96
44745061--44745190	40	3.2	40	91	0	206	31	20	22	25	1.98
44746192--44746267	7	10.3	7	84	8	89	68	2	2	26	1.16
44746192--44746262	15	4.7	15	84	6	83	70	2	2	23	1.14
44746192--44746267	23	3.4	21	80	10	89	68	2	2	26	1.16
44746295--44746340	23	2.0	24	82	4	58	63	8	2	26	1.35
44746422--44746560	41	3.3	41	84	2	152	31	12	23	31	1.93
44746451--44746579	41	3.1	41	84	2	161	37	14	21	26	1.92
44748146--44748247	28	3.5	29	81	6	109	28	27	14	29	1.95
44755985--44756086	28	3.5	29	81	6	109	28	27	14	29	1.95
44763130--44763274	43	3.4	42	78	5	148	22	14	28	33	1.94
44766868--44766906	17	2.2	17	86	13	53	48	15	2	33	1.58
44768880--44768936	27	2.1	27	83	6	71	33	19	24	22	1.97
44768894--44768958	27	2.4	27	82	5	69	32	23	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44769116--44769422	27	11.4	27	87	2	402	25	20	18	34	1.96
44774447--44774691	49	4.9	49	81	3	292	29	25	18	26	1.98
44774460--44774691	100	2.3	98	84	2	293	29	25	18	26	1.98
44775339--44775398	30	2.0	30	83	6	77	30	25	8	36	1.85
44777964--44778042	29	2.7	29	84	5	97	27	34	13	24	1.93
44787684--44787771	28	3.0	28	85	9	97	25	26	23	25	2.00
44787934--44787988	27	2.0	27	82	0	65	41	20	20	18	1.90
44788129--44788508	27	14.1	27	86	1	512	25	19	20	35	1.96
44790307--44790382	13	5.9	13	82	1	91	28	7	27	35	1.85
44793118--44793153	18	2.1	18	89	5	56	16	38	27	16	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292