genome.fa.s9.2.7.7.80.10.50.1000.235.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  235  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68297015--68297135	50	2.4	48	74	18	113	53	3	10	32	1.52
68297299--68297361	24	2.5	26	85	10	78	58	4	3	33	1.35
68297600--68297687	28	3.1	28	72	15	74	56	4	9	29	1.50
68299849--68299891	20	2.0	22	86	13	63	48	4	9	37	1.56
68317345--68317389	11	3.9	11	80	11	54	35	0	2	62	1.08
68319518--68319827	46	6.7	46	92	1	471	39	14	23	22	1.91
68321398--68321432	2	17.5	2	100	0	70	48	0	0	51	1.00
68326855--68326995	3	46.0	3	79	6	140	31	4	2	61	1.29
68327194--68327232	15	2.5	15	87	4	51	33	2	2	61	1.23
68340032--68340169	71	2.0	70	88	1	204	29	16	22	31	1.96
68340185--68340394	54	3.9	54	88	5	307	29	14	17	38	1.89
68340179--68340394	55	4.0	54	87	5	301	29	15	16	38	1.90
68341140--68341200	32	1.9	32	82	0	77	47	42	3	6	1.45
68342244--68342378	3	44.0	3	77	7	119	31	5	2	60	1.32
68342387--68342435	21	2.4	21	80	6	57	40	6	2	51	1.38
68342577--68342615	15	2.5	15	87	4	51	33	2	2	61	1.23
68344182--68344271	45	2.0	45	100	0	180	44	8	11	35	1.71
68348155--68348206	25	2.1	25	82	7	61	13	28	19	38	1.89
68348168--68348221	25	2.2	24	83	9	65	14	29	20	35	1.93
68348407--68348517	25	4.5	25	67	18	72	22	26	17	34	1.96
68352094--68352147	19	2.8	19	82	0	81	18	38	25	16	1.92
68355014--68355038	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68355132--68355173	19	2.2	19	83	8	50	50	9	7	33	1.62
68358376--68358415	21	2.0	21	90	5	64	47	0	10	42	1.37
68360789--68360851	24	2.6	24	78	9	74	19	38	3	39	1.67
68363395--68363449	18	3.1	18	80	17	69	41	0	32	25	1.56
68363395--68363447	9	5.9	9	76	8	54	43	0	32	24	1.55
68364130--68364189	31	1.9	30	83	10	75	46	5	6	41	1.52
68365748--68366044	107	2.8	106	78	10	293	26	8	8	55	1.59
68366584--68366628	23	1.9	24	95	4	83	35	11	8	44	1.71
68366726--68366767	21	2.0	21	100	0	84	61	9	4	23	1.45
68367027--68367075	25	2.0	25	84	8	64	42	2	0	55	1.11
68368536--68368570	18	1.9	18	88	0	52	20	5	8	65	1.40
68370228--68370280	18	2.9	18	85	2	70	43	9	5	41	1.61
68370234--68370291	18	3.2	19	80	9	68	41	8	6	43	1.62
68370439--68370487	24	2.0	24	88	4	71	46	2	0	51	1.12
68372530--68372570	2	20.5	2	100	0	82	48	0	0	51	1.00
68385585--68385632	15	3.0	16	79	17	55	0	52	0	47	1.00
68390355--68390390	14	2.5	14	95	4	63	16	5	13	63	1.47
68390353--68390395	15	2.7	17	82	17	65	13	6	13	65	1.46
68390621--68390734	30	3.9	30	73	16	105	42	1	22	32	1.64
68390723--68390772	23	2.2	22	79	6	55	32	0	4	64	1.12
68390732--68390775	23	1.9	23	95	0	79	22	0	2	75	0.92
68391406--68391485	17	4.7	17	71	18	60	55	3	3	37	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68391575--68391600	2	13.0	2	100	0	52	50	0	0	50	1.00
68392307--68392347	14	2.7	16	85	7	59	14	7	14	63	1.50
68392557--68392685	29	4.4	30	81	6	122	42	3	21	32	1.69
68392682--68392727	24	1.9	24	95	0	83	26	0	2	71	0.97
68393522--68393586	32	1.9	35	85	14	93	33	0	9	56	1.31
68393555--68393583	15	1.9	15	100	0	58	34	0	10	55	1.34
68393530--68393599	21	3.6	19	77	15	63	30	1	10	58	1.39
68393905--68393934	15	2.0	15	93	0	51	23	0	6	70	1.11
68401211--68401245	17	2.1	17	100	0	70	40	0	5	54	1.24
68403363--68403409	14	3.6	13	78	18	53	76	12	0	10	1.02
68406713--68406766	15	3.5	15	97	2	99	64	16	5	12	1.45
68406712--68406767	16	3.6	16	90	4	96	66	16	5	12	1.42
68410167--68410216	24	2.1	24	88	7	75	22	22	12	44	1.85
68417572--68417756	72	2.5	74	91	2	293	34	16	17	31	1.93
68417731--68417781	25	2.0	25	100	0	102	23	13	35	27	1.93
68417831--68419336	72	18.8	77	76	14	943	30	16	18	33	1.94
68418346--68419380	79	12.7	79	72	16	370	30	16	18	34	1.93
68418194--68418507	170	1.9	168	85	5	436	29	19	20	30	1.97
68418202--68418725	246	2.1	241	84	6	655	30	17	19	32	1.95
68418594--68418754	75	2.1	76	84	6	202	27	19	19	33	1.96
68418424--68419380	168	5.8	167	83	7	793	30	16	18	34	1.93
68418785--68418927	75	1.9	75	82	2	180	27	18	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68418927--68419336	81	5.2	80	84	7	541	31	16	18	33	1.92
68418929--68419336	159	2.5	160	87	7	612	31	16	18	33	1.93
68418927--68419380	240	1.9	237	85	6	632	31	15	18	34	1.92
68418927--68419424	81	6.3	76	80	10	422	30	16	17	35	1.92
68418927--68419427	159	3.2	158	82	8	565	30	16	17	35	1.92
68419913--68419962	14	3.5	14	86	13	75	62	14	6	18	1.51
68419910--68419973	29	2.2	28	80	2	83	67	12	4	15	1.39
68420505--68420538	16	2.2	16	89	5	52	50	8	11	29	1.69
68420745--68420805	17	3.8	17	76	18	51	37	6	1	54	1.37
68420945--68420981	3	12.7	3	94	5	67	35	0	0	64	0.94
68420878--68420981	23	4.3	23	72	20	81	34	2	2	59	1.27
68420877--68420981	14	7.1	14	71	25	67	35	2	2	59	1.27
68428320--68428375	27	2.2	26	78	12	64	25	16	1	57	1.49
68428385--68428438	25	2.2	25	96	0	99	50	18	3	27	1.64
68431935--68432098	54	3.0	55	78	9	174	45	16	21	15	1.85
68433203--68434008	180	4.5	179	82	7	921	30	17	24	27	1.97
68433486--68433569	43	2.0	43	88	4	125	32	14	26	27	1.95
68433255--68434005	355	2.1	356	88	2	1116	30	17	24	27	1.97
68435025--68435083	21	2.8	21	78	12	59	69	8	0	22	1.15
68435195--68435223	11	2.6	11	100	0	58	0	37	51	10	1.36
68438802--68438856	25	2.2	26	83	9	69	10	3	10	74	1.19
68439744--68439779	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68442882--68443067	26	7.2	26	92	0	309	36	23	6	33	1.82
68444873--68444903	11	2.8	11	95	0	53	29	9	32	29	1.89
68445512--68445627	59	2.0	59	98	0	223	13	12	34	39	1.82
68453380--68453418	20	2.0	20	100	0	78	20	5	38	35	1.75
68455796--68455830	3	11.7	3	93	0	61	37	0	28	34	1.58
68456708--68456761	23	2.4	22	78	9	56	25	9	9	55	1.61
68464825--68465153	122	2.7	122	83	6	425	41	15	9	34	1.79
68464825--68465194	122	3.0	119	80	7	422	40	14	9	35	1.78
68466894--68466919	12	2.2	12	100	0	52	34	0	23	42	1.54
68467985--68468015	15	2.1	15	93	0	53	35	0	0	64	0.94
68477434--68477506	36	2.0	36	100	0	146	24	13	16	45	1.84
68477988--68478130	68	2.1	68	98	0	277	27	12	31	27	1.93
68478917--68478961	19	2.4	18	86	13	65	66	0	33	0	0.92
68483533--68483574	20	2.2	20	95	4	77	40	19	26	14	1.89
68484343--68484388	23	2.0	23	100	0	92	34	17	8	39	1.80
68486460--68486916	46	10.0	46	87	0	585	40	14	23	20	1.90
68494991--68495017	13	2.1	13	100	0	54	70	7	0	22	1.12
68505067--68505146	39	2.1	39	100	0	160	41	23	12	22	1.88
68506829--68506853	2	12.5	2	100	0	50	52	0	0	48	1.00
68506853--68506883	2	15.5	2	100	0	62	51	0	48	0	1.00
68512596--68512627	2	16.0	2	100	0	64	50	0	0	50	1.00
68513057--68513090	12	2.9	12	86	4	52	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68513216--68513277	30	2.1	30	93	0	106	59	11	3	25	1.46
68513896--68513942	20	2.5	20	86	10	64	53	14	4	27	1.60
68514057--68514125	35	1.9	36	85	8	97	55	4	0	40	1.20
68514058--68514133	35	2.1	36	83	7	93	59	3	0	36	1.16
68515967--68516201	112	2.1	110	93	2	398	44	13	7	34	1.72
68521930--68521979	23	2.2	23	100	0	100	22	32	34	12	1.90
68525381--68525446	35	1.9	34	87	3	96	46	31	4	16	1.67
68525965--68526016	19	2.6	19	85	11	68	38	1	1	57	1.21
68525965--68526016	10	5.1	10	77	13	61	38	1	1	57	1.21
68525965--68526018	20	2.7	20	83	13	74	38	1	1	57	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292