genome.fa.s9.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr09 85040211 
Parameters: 2 7 7 80 10 50 1000
Length:  85040211

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   

This is table  164  of  292  ( 35004 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48747212--48747251	20	2.0	20	95	0	71	15	22	10	52	1.71
48753141--48753185	3	14.7	3	82	13	56	28	2	2	66	1.15
48753404--48753439	3	12.3	3	94	5	65	30	0	0	69	0.89
48755546--48755675	42	3.1	42	90	0	197	33	21	20	25	1.97
48757814--48757868	6	9.3	6	90	2	85	16	0	3	80	0.86
48758442--48758525	26	3.2	26	89	0	123	38	4	21	35	1.75
48760145--48760284	27	5.2	27	85	2	165	18	23	22	35	1.95
48760145--48760284	54	2.6	55	87	2	185	18	23	22	35	1.95
48765687--48765777	42	2.2	40	90	5	139	26	14	26	32	1.94
48766124--48766165	15	2.8	15	85	7	50	26	2	26	45	1.66
48766194--48766279	7	11.4	7	78	14	91	25	0	43	31	1.55
48766191--48766279	22	4.0	23	85	7	112	25	0	41	32	1.56
48766194--48766291	15	6.4	15	78	11	101	25	0	40	33	1.56
48766191--48766317	15	8.3	15	73	12	62	23	0	41	33	1.60
48766309--48766394	7	11.9	7	68	7	55	24	0	26	48	1.51
48766340--48766382	15	2.9	15	86	6	52	25	0	27	46	1.53
48766591--48766684	26	3.6	26	89	2	145	44	6	4	44	1.49
48767323--48767356	13	2.6	13	90	0	59	23	29	0	47	1.52
48769003--48769072	34	2.1	34	81	10	81	27	2	0	70	1.02
48769649--48769786	67	2.1	67	97	0	258	39	19	18	22	1.92
48770637--48770691	15	3.7	15	75	22	62	45	0	0	54	0.99
48770635--48770700	29	2.3	29	92	5	107	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48770614--48770673	20	3.0	20	70	4	59	40	0	3	56	1.16
48770906--48771001	9	10.7	9	90	0	138	44	23	2	29	1.65
48776493--48776572	21	3.8	21	88	0	115	30	18	47	3	1.66
48778679--48778714	17	2.1	18	89	5	56	47	5	5	41	1.50
48781495--48781651	43	3.7	43	75	10	126	24	17	28	29	1.97
48784308--48784418	24	4.6	24	95	0	204	21	16	26	36	1.94
48784308--48784440	48	2.8	48	89	2	160	24	16	24	33	1.96
48788892--48788961	27	2.5	28	88	2	106	28	14	25	31	1.95
48788892--48788973	27	3.0	27	80	8	103	29	13	23	34	1.93
48796812--48796881	27	2.5	28	88	2	106	28	14	25	31	1.95
48796812--48796893	27	3.0	27	80	8	103	29	13	23	34	1.93
48810400--48810432	2	16.5	2	100	0	66	51	0	0	48	1.00
48818022--48818102	37	2.2	37	93	0	135	24	32	22	20	1.98
48818261--48818386	48	2.6	48	88	0	180	30	26	7	35	1.85
48829803--48829934	55	2.4	55	88	1	203	21	21	29	28	1.98
48840550--48840596	23	2.0	23	83	4	58	48	4	4	42	1.42
48844199--48844245	23	2.0	23	83	4	58	48	4	4	42	1.42
48846003--48846048	23	2.0	23	100	0	92	30	26	8	34	1.86
48846802--48846849	23	2.1	23	84	0	60	47	0	2	50	1.12
48846944--48847019	34	2.2	36	81	9	95	55	1	2	40	1.22
48857210--48857406	47	4.1	47	88	3	234	35	9	27	27	1.88
48857257--48857333	25	3.2	25	64	23	65	35	10	25	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48857239--48857310	22	3.1	22	64	24	58	33	13	29	23	1.93
48857274--48857461	50	3.8	50	84	10	228	36	9	25	29	1.86
48857274--48857464	100	1.9	96	85	7	258	36	8	25	29	1.86
48857274--48857485	50	4.3	50	81	10	204	34	8	26	29	1.87
48857610--48857718	37	2.9	37	95	0	191	22	19	31	26	1.98
48859977--48860260	142	2.0	142	96	0	523	24	13	19	41	1.88
48862749--48862781	12	2.8	12	90	4	50	24	3	6	66	1.28
48867049--48867092	22	2.0	22	100	0	88	27	27	18	27	1.98
48867106--48867524	39	10.7	39	86	1	541	28	28	22	20	1.98
48867106--48867524	118	3.6	118	85	2	556	28	28	22	20	1.98
48867106--48867524	157	2.7	157	90	0	658	28	28	22	20	1.98
48871462--48871918	39	11.7	39	88	1	628	28	28	23	19	1.98
48874851--48874921	35	2.0	35	97	0	133	15	47	12	23	1.80
48875325--48875398	33	2.3	33	86	6	98	63	18	5	12	1.47
48875654--48875703	11	4.5	11	82	9	57	0	56	0	44	0.99
48876220--48876271	20	2.5	21	87	6	88	38	0	7	53	1.30
48888588--48889394	70	11.2	70	90	5	1281	32	15	19	31	1.93
48888588--48889394	147	5.6	140	91	5	1281	32	15	19	31	1.93
48888588--48889394	217	3.7	217	96	1	1484	32	15	19	31	1.93
48888588--48889495	147	6.3	142	86	8	982	31	16	20	31	1.94
48889445--48889599	54	3.0	52	81	11	194	29	16	18	34	1.93
48890306--48890411	35	3.0	35	92	0	185	16	48	12	23	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48890848--48890883	14	2.5	15	95	4	65	63	13	5	16	1.47
48890812--48890896	32	2.9	28	74	19	82	65	18	4	10	1.40
48891146--48891195	11	4.5	11	82	9	57	0	56	0	44	0.99
48891719--48891768	22	2.3	21	83	6	73	38	0	6	56	1.24
48891710--48891768	2	31.0	2	76	10	52	38	0	6	54	1.27
48891930--48891964	2	17.5	2	87	0	52	45	2	2	48	1.32
48896372--48896452	41	2.0	41	90	4	128	37	8	12	41	1.73
48896863--48896940	40	1.9	41	82	7	97	38	10	11	39	1.76
48896248--48898001	498	3.5	493	84	6	2036	38	12	11	37	1.80
48899818--48899889	28	2.7	26	80	6	74	30	16	20	31	1.95
48899846--48899889	13	3.5	12	84	3	52	34	18	18	29	1.94
48899803--48899880	41	1.9	41	81	0	93	29	19	24	26	1.98
48899970--48900016	22	2.1	22	84	0	58	21	23	25	29	1.99
48900283--48900475	36	5.2	36	77	6	113	27	17	21	33	1.96
48900341--48900483	38	3.8	38	77	6	132	27	16	21	34	1.94
48900324--48900469	74	2.0	74	87	2	213	27	15	22	34	1.95
48902819--48902882	31	2.1	31	82	8	78	37	4	3	54	1.37
48903523--48903564	9	4.6	9	80	14	50	59	0	2	38	1.10
48916192--48916232	2	20.5	2	100	0	82	48	0	0	51	1.00
48917207--48917253	24	2.0	24	87	8	69	40	0	2	57	1.11
48917447--48917497	25	2.0	25	81	7	59	64	1	13	19	1.37
48918983--48919193	64	3.2	64	62	20	151	29	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48918949--48919234	137	2.1	137	97	0	545	31	25	18	24	1.97
48921024--48921159	26	5.2	26	94	0	236	36	25	5	33	1.78
48924792--48924823	15	2.1	15	100	0	64	40	6	21	31	1.78
48930809--48931068	18	14.3	18	71	8	150	37	15	12	35	1.84
48930796--48931068	36	7.5	36	72	6	192	37	15	12	35	1.84
48930809--48930947	75	1.9	74	84	6	190	38	15	11	34	1.83
48931185--48931301	47	2.5	47	92	2	191	40	23	21	15	1.91
48931886--48931923	20	2.0	18	90	10	58	0	31	0	68	0.90
48936577--48936765	18	10.4	18	72	8	132	37	15	12	34	1.85
48936590--48936728	75	1.9	75	84	3	190	38	15	11	34	1.84
48937395--48937425	16	1.9	16	93	0	53	41	0	3	54	1.16
48937505--48937535	12	2.6	12	94	0	53	74	0	25	0	0.82
48939632--48939721	18	5.0	18	81	0	90	36	14	12	36	1.84
48939838--48939954	47	2.5	47	87	5	157	42	22	19	15	1.88
48940589--48940626	20	2.0	18	90	10	58	0	31	0	68	0.90
48943454--48943491	19	2.0	19	100	0	76	26	36	10	26	1.89
48943917--48943982	20	3.5	17	75	18	60	63	1	1	33	1.13
48946160--48946283	34	3.6	34	93	0	203	36	6	13	43	1.70
48946499--48946535	5	7.2	5	87	6	56	2	0	16	81	0.81
48951481--48951513	16	2.1	16	88	5	50	24	0	9	66	1.20
48953213--48953656	44	9.9	43	73	13	331	31	18	21	29	1.96
48953208--48953649	181	2.4	181	92	0	715	31	18	20	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48953583--48953703	44	2.8	44	83	7	131	29	21	23	25	1.99
48953823--48953855	16	1.9	18	88	11	52	45	18	33	3	1.65
48956202--48956357	3	51.0	3	74	8	102	29	6	2	61	1.34
48957388--48957430	3	14.3	3	100	0	86	32	0	0	67	0.91
48958177--48958253	36	2.1	37	95	2	138	33	19	18	28	1.95
48968916--48968952	15	2.5	15	100	0	74	40	24	10	24	1.87
48970210--48970273	31	2.1	31	93	0	110	25	21	14	39	1.91
48970465--48970607	24	6.0	24	90	7	202	25	23	22	28	1.99
48970465--48970606	47	3.0	48	89	7	200	26	23	22	28	1.99
48970464--48970607	71	2.0	72	88	6	213	25	22	22	29	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292